Rh1AG213500

Squamosa promoter-binding-like protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
40795093 .. 40799138
4046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG213500.1

Sequence Viewer

Length: 1095 bp
ATGGAAATGTTTGGGCACAACATTGGTGGCAGATCAGGGCAGAATGGTAATAACGCAAATCTTGCTTGGGATATATGGGAGATGAATAATAGTAATAATAACGGCAACAACGATATATTGTACATGACGGCTGCAACAGCGGCCGTCACCATAGCGGAGCCGCCTTCCGGCTCCAGCGCGAGCTCCGAAGCGAGTTTGGGTCACCCGCTGGTGCAAAACAACAACGGTGTTCAAGCAGTGCAGCAGCACTTCCAGAATTTGTACGGTGGCGATCATCATCATCATCATCAGAGTCGTCTTCGTGGGTCCCAATACCTTCCGGATCCCCACCTTATGTGCTTGAAGCTGGGGAAGAGGCACTACTTTGAGGACGCTCCTCTGCCTCTGCTTGATCATCGAGACGTGGCGGGATTTCCTTTGGCCGTAGGGGGCATGAAGAGAGGCAAGAACATGTATGGCGCTGGCAGCCGCGGAGGTGGGGCTTCTACGCAGTCGTTGAAGGTGCCGCGGTGTCAGGTGGAGGGGTGCCACGTGGCGCTGGTGAGCGCGAAGGAGTACCACCGGCGGCACAAAGTGTGTGAGATGCACTCCAAGGCTTCCAAGGTGGTGGTCTTAGGGTTGGAGCAGCGCTTCTGTCAGCAATGCAGCAGGTTTCACGTGGTGTCGGAGTTTGACGAGTCTAAGAGGAGTTGTAGGAGGAGATTAGCTGGGCATAATGAGCGAAGAAGAAAATGCTCTCATGATTCTCTACCCAGAAGCTCTTCTCAAGAGAAGAAATTGATGATGGCTGCAGCAGGGAGGTTTCCATACCTATCGTCATCCCCGACAGGATGTAGTGCTCTCTCTCTTCTGTCATCTTCCAAAAGTAGTAGTGATTCTTGGGCATCTTGGCTCGCCAGCTCATATCTTCTTCGGACCGATCAAACTCAAACTGGGAGGACTCATCACATTATAATAACCATTCGACCCAAGACTTCGCAGCCTCCGAGCCCGGCATATGAGACTTTCTTGCCTGCAAGGGACAGTAGTACTAAGGCTGAAGACGAGTGTGACCTGTGGAAATGGAACTCCTTCCAAGGAGCCAGTGTGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

364

Amino Acids

40.17

Weight (kDa)

9.3

Isoelectric Point (pI)

64.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 171 - 244 3e-31 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015686)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 953
Acc36I ACCTGC 1 cut(s) 639
AccB1I GGYRCC 2 cut(s) 502, 525
AccII CGCG 4 cut(s) 179, 471, 508, 548
AccIII TCCGGA 1 cut(s) 319
AclWI GGATC 2 cut(s) 317, 330
AcoI YGGCCR 2 cut(s) 141, 420
AcsI RAATTY 1 cut(s) 256
AcuI CTGAAG 1 cut(s) 1059
AcvI CACGTG 2 cut(s) 532, 658
AdeI CACNNNGTG 2 cut(s) 574, 661
AfaI GTAC 4 cut(s) 122, 263, 557, 1030
AfeI AGCGCT 1 cut(s) 629
AfiI CCNNNNNNNGG 1 cut(s) 167
AflIII ACRYGT 1 cut(s) 450
AgsI TTSAA 3 cut(s) 233, 343, 499
AjiI CACGTC 1 cut(s) 403
AluBI AGCT 5 cut(s) 183, 346, 707, 759, 900
AluI AGCT 5 cut(s) 183, 346, 707, 759, 900
Alw21I GWGCWC 2 cut(s) 185, 841
Alw26I GTCTC 2 cut(s) 393, 995
AlwI GGATC 2 cut(s) 317, 330
Aor13HI TCCGGA 1 cut(s) 319
Aor51HI AGCGCT 1 cut(s) 629
AoxI GGCC 2 cut(s) 141, 420
ApeKI GCWGC 9 cut(s) 131, 241, 244, 465, 625, 645, 788, 791, 979
ApoI RAATTY 1 cut(s) 256
Asp700I GAANNNNTTC 2 cut(s) 760, 1070
AspLEI GCGC 5 cut(s) 179, 461, 538, 548, 630
AspS9I GGNCC 2 cut(s) 306, 915
AsuC2I CCSGG 1 cut(s) 992
AsuHPI GGTGA 3 cut(s) 139, 194, 553
AvaII GGWCC 2 cut(s) 306, 915
BaeGI GKGCMC 1 cut(s) 18
BamHI GGATCC 1 cut(s) 322
BanI GGYRCC 2 cut(s) 502, 525
BanII GRGCYC 2 cut(s) 185, 992
BarI GAAGNNNNNNTAC 2 cut(s) 344, 376
BbrPI CACGTG 2 cut(s) 532, 658
BbsI GAAGAC 2 cut(s) 290, 1047
Bbv12I GWGCWC 2 cut(s) 185, 841
BbvI GCAGC 9 cut(s) 118, 253, 256, 477, 637, 657, 775, 803, 991
BccI CCATC 1 cut(s) 778
BceAI ACGGC 4 cut(s) 118, 128, 144, 407
BclI TGATCA 1 cut(s) 391
BcnI CCSGG 1 cut(s) 992
BcoDI GTCTC 2 cut(s) 393, 995
BfmI CTRYAG 1 cut(s) 789
BfoI RGCGCY 3 cut(s) 462, 539, 631
BfuAI ACCTGC 1 cut(s) 639
BmcAI AGTACT 1 cut(s) 1030
Bme1390I CCNGG 1 cut(s) 992
Bme18I GGWCC 2 cut(s) 306, 915
BmgBI CACGTC 1 cut(s) 403
BmgT120I GGNCC 2 cut(s) 306, 915
BmiI GGNNCC 8 cut(s) 159, 172, 307, 308, 324, 504, 527, 1081
BmrFI CCNGG 1 cut(s) 992
BmrI ACTGGG 1 cut(s) 942
BmsI GCATC 2 cut(s) 573, 893
BmuI ACTGGG 1 cut(s) 942
BpiI GAAGAC 2 cut(s) 290, 1047
BplI GAGNNNNNCTC 2 cut(s) 572, 604
BpmI CTGGAG 1 cut(s) 157
BpuEI CTTGAG 1 cut(s) 750
BpuMI CCSGG 1 cut(s) 992
BsaAI YACGTR 2 cut(s) 532, 658
BsaBI GATNNNNATC 1 cut(s) 276
BsaJI CCNNGG 5 cut(s) 469, 506, 591, 600, 1075
BsaWI WCCGGW 1 cut(s) 319
BsaXI ACNNNNNCTCC 1 cut(s) 1071
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse118I RCCGGY 1 cut(s) 561
Bse1I ACTGG 2 cut(s) 937, 1083
Bse3DI GCAATG 1 cut(s) 647
Bse8I GATNNNNATC 1 cut(s) 276
BseAI TCCGGA 1 cut(s) 319
BseDI CCNNGG 5 cut(s) 469, 506, 591, 600, 1075
BseGI GGATG 2 cut(s) 818, 836
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMI GCAATG 1 cut(s) 647
BseNI ACTGG 2 cut(s) 937, 1083
BseRI GAGGAG 3 cut(s) 366, 700, 712
BseSI GKGCMC 1 cut(s) 18
BseX3I CGGCCG 1 cut(s) 141
BseXI GCAGC 9 cut(s) 118, 253, 256, 477, 637, 657, 775, 803, 991
BseYI CCCAGC 2 cut(s) 346, 707
BsgI GTGCAG 1 cut(s) 260
Bsh1236I CGCG 4 cut(s) 179, 471, 508, 548
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 2 cut(s) 143, 422
BshNI GGYRCC 2 cut(s) 502, 525
BsiEI CGRYCG 1 cut(s) 144
BsiHKAI GWGCWC 2 cut(s) 185, 841
BsiSI CCGG 4 cut(s) 168, 320, 562, 992
BslFI GGGAC 2 cut(s) 292, 1034
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 2 cut(s) 393, 995
BsmBI CGTCTC 1 cut(s) 393
BsmFI GGGAC 2 cut(s) 292, 1034
BsnI GGCC 2 cut(s) 143, 422
Bsp1286I GDGCHC 4 cut(s) 18, 185, 841, 992
Bsp13I TCCGGA 1 cut(s) 319
Bsp1407I TGTACA 1 cut(s) 120
Bsp143I GATC 5 cut(s) 32, 271, 322, 391, 919
BspANI GGCC 2 cut(s) 143, 422
BspEI TCCGGA 1 cut(s) 319
BspFNI CGCG 4 cut(s) 179, 471, 508, 548
BspHI TCATGA 1 cut(s) 739
BspLI GGNNCC 8 cut(s) 159, 172, 307, 308, 324, 504, 527, 1081
BspMAI CTGCAG 1 cut(s) 793
BspMI ACCTGC 1 cut(s) 639
BspPI GGATC 2 cut(s) 317, 330
BspQI GCTCTTC 1 cut(s) 766
BspT107I GGYRCC 2 cut(s) 502, 525
BsrDI GCAATG 1 cut(s) 647
BsrFI RCCGGY 1 cut(s) 561
BsrGI TGTACA 1 cut(s) 120
BsrI ACTGG 2 cut(s) 937, 1083
BssAI RCCGGY 1 cut(s) 561
BssECI CCNNGG 5 cut(s) 469, 506, 591, 600, 1075
BssMI GATC 5 cut(s) 32, 271, 322, 391, 919
BssT1I CCWWGG 3 cut(s) 591, 600, 1075
Bst4CI ACNGT 3 cut(s) 227, 266, 1025
Bst6I CTCTTC 4 cut(s) 347, 431, 766, 852
BstAPI GCANNNNNTGC 1 cut(s) 62
BstAUI TGTACA 1 cut(s) 120
BstBAI YACGTR 2 cut(s) 532, 658
BstC8I GCNNGC 5 cut(s) 181, 463, 894, 898, 1014
BstDEI CTNAG 3 cut(s) 613, 681, 1032
BstDSI CCRYGG 2 cut(s) 469, 506
BstEII GGTNACC 1 cut(s) 200
BstF5I GGATG 2 cut(s) 818, 836
BstFNI CGCG 4 cut(s) 179, 471, 508, 548
BstH2I RGCGCY 3 cut(s) 462, 539, 631
BstHHI GCGC 5 cut(s) 179, 461, 538, 548, 630
BstKTI GATC 5 cut(s) 35, 274, 325, 394, 922
BstMAI GTCTC 2 cut(s) 393, 995
BstMBI GATC 5 cut(s) 32, 271, 322, 391, 919
BstMCI CGRYCG 1 cut(s) 144
BstMWI GCNNNNNNNGC 5 cut(s) 62, 137, 140, 465, 718
BstNSI RCATGY 1 cut(s) 454
BstPI GGTNACC 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 990
BstSFI CTRYAG 1 cut(s) 789
BstSLI GKGCMC 1 cut(s) 18
BstUI CGCG 4 cut(s) 179, 471, 508, 548
BstV1I GCAGC 9 cut(s) 118, 253, 256, 477, 637, 657, 775, 803, 991
BstV2I GAAGAC 2 cut(s) 290, 1047
BstX2I RGATCY 1 cut(s) 322
BstXI CCANNNNNNTGG 1 cut(s) 607
BstYI RGATCY 1 cut(s) 322
BstZI CGGCCG 1 cut(s) 141
BsuRI GGCC 2 cut(s) 143, 422
BtgI CCRYGG 2 cut(s) 469, 506
BtrI CACGTC 1 cut(s) 403
BtsCI GGATG 2 cut(s) 818, 836
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 2 cut(s) 243, 1090
BveI ACCTGC 1 cut(s) 639
Cac8I GCNNGC 5 cut(s) 181, 463, 894, 898, 1014
CciI TCATGA 1 cut(s) 739
CfoI GCGC 5 cut(s) 179, 461, 538, 548, 630
Cfr10I RCCGGY 1 cut(s) 561
Cfr13I GGNCC 2 cut(s) 306, 915
Cfr42I CCGCGG 2 cut(s) 472, 509
CpoI CGGWCCG 1 cut(s) 915
CseI GACGC 1 cut(s) 380
Csp6I GTAC 4 cut(s) 121, 262, 556, 1029
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CspI CGGWCCG 1 cut(s) 915
CviAII CATG 4 cut(s) 124, 433, 451, 740
CviQI GTAC 4 cut(s) 121, 262, 556, 1029
DdeI CTNAG 3 cut(s) 613, 681, 1032
DpnI GATC 5 cut(s) 34, 273, 324, 393, 921
DpnII GATC 5 cut(s) 32, 271, 322, 391, 919
DraIII CACNNNGTG 2 cut(s) 574, 661
EaeI YGGCCR 2 cut(s) 141, 420
EagI CGGCCG 1 cut(s) 141
Eam1104I CTCTTC 4 cut(s) 347, 431, 766, 852
EarI CTCTTC 4 cut(s) 347, 431, 766, 852
Ecl136II GAGCTC 1 cut(s) 183
EclXI CGGCCG 1 cut(s) 141
Eco130I CCWWGG 3 cut(s) 591, 600, 1075
Eco24I GRGCYC 2 cut(s) 185, 992
Eco47I GGWCC 2 cut(s) 306, 915
Eco47III AGCGCT 1 cut(s) 629
Eco52I CGGCCG 1 cut(s) 141
Eco53kI GAGCTC 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 1059
Eco72I CACGTG 2 cut(s) 532, 658
Eco91I GGTNACC 1 cut(s) 200
EcoICRI GAGCTC 1 cut(s) 183
EcoO109I RGGNCCY 1 cut(s) 306
EcoO65I GGTNACC 1 cut(s) 200
EcoT14I CCWWGG 3 cut(s) 591, 600, 1075
EcoT38I GRGCYC 2 cut(s) 185, 992
ErhI CCWWGG 3 cut(s) 591, 600, 1075
Esp3I CGTCTC 1 cut(s) 393
FaeI CATG 4 cut(s) 127, 436, 454, 743
FaqI GGGAC 2 cut(s) 292, 1034
FatI CATG 4 cut(s) 123, 432, 450, 739
FauI CCCGC 2 cut(s) 213, 400
FauNDI CATATG 1 cut(s) 997
FbaI TGATCA 1 cut(s) 391
FokI GGATG 2 cut(s) 805, 843
FriOI GRGCYC 2 cut(s) 185, 992
GlaI GCGC 5 cut(s) 178, 460, 537, 547, 629
GsaI CCCAGC 2 cut(s) 350, 711
GsuI CTGGAG 1 cut(s) 157
HaeII RGCGCY 3 cut(s) 462, 539, 631
HaeIII GGCC 2 cut(s) 143, 422
HapII CCGG 4 cut(s) 168, 320, 562, 992
HgaI GACGC 1 cut(s) 380
HhaI GCGC 5 cut(s) 179, 461, 538, 548, 630
Hin1II CATG 4 cut(s) 127, 436, 454, 743
Hin6I GCGC 5 cut(s) 177, 459, 536, 546, 628
HinP1I GCGC 5 cut(s) 177, 459, 536, 546, 628
HinfI GANTC 5 cut(s) 292, 677, 743, 875, 940
HpaII CCGG 4 cut(s) 168, 320, 562, 992
HphI GGTGA 3 cut(s) 139, 194, 553
Hpy188I TCNGA 5 cut(s) 187, 291, 667, 915, 987
Hpy188III TCNNGA 5 cut(s) 253, 320, 398, 740, 767
HpyAV CCTTC 5 cut(s) 174, 326, 493, 544, 1081
HpyCH4III ACNGT 3 cut(s) 227, 266, 1025
HpyCH4IV ACGT 3 cut(s) 402, 531, 657
HpyCH4V TGCA 7 cut(s) 134, 214, 241, 586, 645, 791, 1016
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 137, 140, 465, 718
HpyF3I CTNAG 3 cut(s) 613, 681, 1032
HpySE526I ACGT 3 cut(s) 402, 531, 657
Hsp92II CATG 4 cut(s) 127, 436, 454, 743
HspAI GCGC 5 cut(s) 177, 459, 536, 546, 628
KflI GGGWCCC 1 cut(s) 306
Kpn2I TCCGGA 1 cut(s) 319
Ksp22I TGATCA 1 cut(s) 391
KspI CCGCGG 2 cut(s) 472, 509
Kzo9I GATC 5 cut(s) 32, 271, 322, 391, 919
LguI GCTCTTC 1 cut(s) 766
LmnI GCTCC 6 cut(s) 157, 176, 188, 379, 622, 1079
Lsp1109I GCAGC 9 cut(s) 118, 253, 256, 477, 637, 657, 775, 803, 991
LweI GCATC 2 cut(s) 573, 893
MaeII ACGT 3 cut(s) 402, 531, 657
MaeIII GTNAC 3 cut(s) 145, 200, 1049
MalI GATC 5 cut(s) 34, 273, 324, 393, 921
MboI GATC 5 cut(s) 32, 271, 322, 391, 919
MflI RGATCY 1 cut(s) 322
MhlI GDGCHC 4 cut(s) 18, 185, 841, 992
MluCI AATT 2 cut(s) 256, 776
MlyI GAGTC 3 cut(s) 301, 686, 934
MmeI TCCRAC 2 cut(s) 600, 645
MroI TCCGGA 1 cut(s) 319
MroXI GAANNNNTTC 2 cut(s) 760, 1070
MseI TTAA 1 cut(s) 1093
MspA1I CMGCKG 4 cut(s) 140, 208, 471, 508
MspI CCGG 4 cut(s) 168, 320, 562, 992
MspR9I CCNGG 1 cut(s) 992
MvnI CGCG 4 cut(s) 179, 471, 508, 548
MwoI GCNNNNNNNGC 5 cut(s) 62, 137, 140, 465, 718
NciI CCSGG 1 cut(s) 992
NdeI CATATG 1 cut(s) 997
NdeII GATC 5 cut(s) 32, 271, 322, 391, 919
NlaIII CATG 4 cut(s) 127, 436, 454, 743
NlaIV GGNNCC 8 cut(s) 159, 172, 307, 308, 324, 504, 527, 1081
NmuCI GTSAC 3 cut(s) 145, 200, 1049
NspI RCATGY 1 cut(s) 454
PagI TCATGA 1 cut(s) 739
PciI ACATGT 1 cut(s) 450
PciSI GCTCTTC 1 cut(s) 766
PcsI WCGNNNNNNNCGW 3 cut(s) 108, 821, 983
PdmI GAANNNNTTC 2 cut(s) 760, 1070
PfeI GAWTC 2 cut(s) 743, 875
PleI GAGTC 3 cut(s) 300, 685, 934
PmaCI CACGTG 2 cut(s) 532, 658
PmlI CACGTG 2 cut(s) 532, 658
PpsI GAGTC 3 cut(s) 300, 685, 934
Ppu21I YACGTR 2 cut(s) 532, 658
PpuMI RGGWCCY 1 cut(s) 306
PscI ACATGT 1 cut(s) 450
PsiI TTATAA 1 cut(s) 953
Psp124BI GAGCTC 1 cut(s) 185
Psp5II RGGWCCY 1 cut(s) 306
PspCI CACGTG 2 cut(s) 532, 658
PspEI GGTNACC 1 cut(s) 200
PspFI CCCAGC 2 cut(s) 346, 707
PspN4I GGNNCC 8 cut(s) 159, 172, 307, 308, 324, 504, 527, 1081
PspPI GGNCC 2 cut(s) 306, 915
PspPPI RGGWCCY 1 cut(s) 306
PstI CTGCAG 1 cut(s) 793
PsuI RGATCY 1 cut(s) 322
RsaI GTAC 4 cut(s) 122, 263, 557, 1030
RsaNI GTAC 4 cut(s) 121, 262, 556, 1029
Rsr2I CGGWCCG 1 cut(s) 915
RsrII CGGWCCG 1 cut(s) 915
SacI GAGCTC 1 cut(s) 185
SacII CCGCGG 2 cut(s) 472, 509
SapI GCTCTTC 1 cut(s) 766
SaqAI TTAA 1 cut(s) 1093
Sau3AI GATC 5 cut(s) 32, 271, 322, 391, 919
Sau96I GGNCC 2 cut(s) 306, 915
ScaI AGTACT 1 cut(s) 1030
SchI GAGTC 3 cut(s) 301, 686, 934
ScrFI CCNGG 1 cut(s) 992
SduI GDGCHC 4 cut(s) 18, 185, 841, 992
SfaNI GCATC 2 cut(s) 573, 893
SfcI CTRYAG 1 cut(s) 789
Sfr303I CCGCGG 2 cut(s) 472, 509
SgrAI CRCCGGYG 1 cut(s) 561
SgrBI CCGCGG 2 cut(s) 472, 509
SinI GGWCC 2 cut(s) 306, 915
SmlI CTYRAG 1 cut(s) 765
SmoI CTYRAG 1 cut(s) 765
Sse9I AATT 2 cut(s) 256, 776
SstI GAGCTC 1 cut(s) 185
StyD4I CCNGG 1 cut(s) 990
StyI CCWWGG 3 cut(s) 591, 600, 1075
TaaI ACNGT 3 cut(s) 227, 266, 1025
TaiI ACGT 3 cut(s) 405, 534, 660
TaqI TCGA 2 cut(s) 397, 964
TaqII GACCGA 1 cut(s) 932
TasI AATT 2 cut(s) 256, 776
TatI WGTACW 2 cut(s) 120, 1028
TauI GCSGC 5 cut(s) 143, 163, 471, 508, 568
TfiI GAWTC 2 cut(s) 743, 875
Tru1I TTAA 1 cut(s) 1093
Tru9I TTAA 1 cut(s) 1093
TscAI CASTG 2 cut(s) 243, 1090
TseFI GTSAC 3 cut(s) 145, 200, 1049
TseI GCWGC 9 cut(s) 131, 241, 244, 465, 625, 645, 788, 791, 979
Tsp45I GTSAC 3 cut(s) 145, 200, 1049
TspDTI ATGAA 2 cut(s) 98, 449
TspRI CASTG 2 cut(s) 243, 1090
VpaK11BI GGWCC 2 cut(s) 306, 915
XapI RAATTY 1 cut(s) 256
XceI RCATGY 1 cut(s) 454
XmnI GAANNNNTTC 2 cut(s) 760, 1070
ZrmI AGTACT 1 cut(s) 1030
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.