Rorug01G0195700

Squamosa promoter-binding-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0015686
Physical Location & Seq
Forward (+)
27449959 .. 27451293
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0195700.1

Sequence Viewer

Length: 390 bp
ATGTTGTTCATAAGAGAGAAGGCAAAAATGCAGGCTGTTAAGGACAAGCTTGGTGAAATGACCGCCATGAAAAAGGTCAAGGAAGAGGCTAGAGCCGAAGAGAAGGCCGAGAAAGAAATAGCTAAAGCCCGAGCAGACATAGCTCATGAGGTGAGATTGGCAAAAGAGGCGGAAGCAACAATGGTGCATCATGTCGCCAAGGCCGGAGAAATTGCTAGAACCGGAGAACAAATGGCGAATGAGAAGTTAGCCAAGCTCAGGGAATCTGATCCAGCGGCCGGGGCTGGATCAGGGGCAGGGGCAGGACGAGGGGGTGTTCCTAATAACGCTGCTGCTAACCCTCTTCCTACTACTAACATGTCTCCCCCAACTTACAACAAAATGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SBP

Protein Analysis

129

Amino Acids

13.71

Weight (kDa)

9.36

Isoelectric Point (pI)

35.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_1 PF03760 10 - 73 2.8e-11 Late embryogenesis abundant (LEA) group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015686)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g10680
malus_domestica MD07G1111600.v1.1
prunus_persica Prupe.2G135000_v2.0.a1
pyrus_communis pycom07g09650
rosa_chinensis RchiOBHm_Chr1g0348611
rosa_laevigata RLG00000028636
rosa_multiflora Rmu_sc0008668.1_g000011 Rmu_sc0008668.1_g000012
rosa_roxburghii Rroxscaffold_4G00306890
rosa_rugosa Rorug01G0195700
rosa_samantha Rh1AG213500 Rh1BG179900 Rh1CG197800 Rh1CG197900 Rh1DG209900
rosa_wichuraiana Rw1G018080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 63, 170, 275
AclWI GGATC 2 cut(s) 263, 295
AcoI YGGCCR 1 cut(s) 276
AfiI CCNNNNNNNGG 2 cut(s) 258, 278
AflIII ACRYGT 1 cut(s) 357
AluBI AGCT 4 cut(s) 49, 122, 143, 256
AluI AGCT 4 cut(s) 49, 122, 143, 256
Alw26I GTCTC 1 cut(s) 366
AlwI GGATC 2 cut(s) 263, 295
Ama87I CYCGRG 1 cut(s) 129
AoxI GGCC 3 cut(s) 105, 201, 276
ApeKI GCWGC 2 cut(s) 329, 332
AsuC2I CCSGG 1 cut(s) 280
AsuHPI GGTGA 2 cut(s) 65, 163
AvaI CYCGRG 1 cut(s) 129
BbvI GCAGC 2 cut(s) 316, 319
BcnI CCSGG 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 366
BfaI CTAG 2 cut(s) 90, 216
BisI GCNGC 3 cut(s) 276, 330, 333
BlsI GCNGC 3 cut(s) 277, 331, 334
Bme1390I CCNGG 1 cut(s) 280
BmeT110I CYCGRG 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 280
BmsI GCATC 1 cut(s) 196
Bpu10I CCTNAGC 1 cut(s) 257
BpuMI CCSGG 1 cut(s) 280
BsaJI CCNNGG 2 cut(s) 198, 279
BsaWI WCCGGW 1 cut(s) 221
Bsc4I CCNNNNNNNGG 2 cut(s) 258, 278
BseDI CCNNGG 2 cut(s) 198, 279
BseLI CCNNNNNNNGG 2 cut(s) 258, 278
BseMII CTCAG 1 cut(s) 271
BseX3I CGGCCG 1 cut(s) 276
BseXI GCAGC 2 cut(s) 316, 319
Bsh1285I CGRYCG 1 cut(s) 279
BshFI GGCC 3 cut(s) 107, 203, 278
BsiEI CGRYCG 1 cut(s) 279
BsiHKCI CYCGRG 1 cut(s) 129
BsiSI CCGG 3 cut(s) 204, 222, 279
BslI CCNNNNNNNGG 2 cut(s) 258, 278
BsmAI GTCTC 1 cut(s) 366
BsnI GGCC 3 cut(s) 107, 203, 278
BsoBI CYCGRG 1 cut(s) 129
Bsp143I GATC 2 cut(s) 268, 287
BspACI CCGC 3 cut(s) 63, 170, 275
BspANI GGCC 3 cut(s) 107, 203, 278
BspCNI CTCAG 1 cut(s) 270
BspHI TCATGA 1 cut(s) 145
BspPI GGATC 2 cut(s) 263, 295
BssECI CCNNGG 2 cut(s) 198, 279
BssMI GATC 2 cut(s) 268, 287
BssT1I CCWWGG 1 cut(s) 198
Bst6I CTCTTC 3 cut(s) 78, 93, 348
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 1 cut(s) 257
BstKTI GATC 2 cut(s) 271, 290
BstMAI GTCTC 1 cut(s) 366
BstMBI GATC 2 cut(s) 268, 287
BstMCI CGRYCG 1 cut(s) 279
BstMWI GCNNNNNNNGC 3 cut(s) 140, 167, 281
BstNSI RCATGY 1 cut(s) 361
BstSCI CCNGG 1 cut(s) 278
BstV1I GCAGC 2 cut(s) 316, 319
BstZI CGGCCG 1 cut(s) 276
BsuRI GGCC 3 cut(s) 107, 203, 278
Cac8I GCNNGC 1 cut(s) 33
CciI TCATGA 1 cut(s) 145
CviAII CATG 4 cut(s) 67, 146, 191, 358
DdeI CTNAG 1 cut(s) 257
DpnI GATC 2 cut(s) 270, 289
DpnII GATC 2 cut(s) 268, 287
EaeI YGGCCR 1 cut(s) 276
EagI CGGCCG 1 cut(s) 276
Eam1104I CTCTTC 3 cut(s) 78, 93, 348
EarI CTCTTC 3 cut(s) 78, 93, 348
EciI GGCGGA 1 cut(s) 185
EclXI CGGCCG 1 cut(s) 276
Eco130I CCWWGG 1 cut(s) 198
Eco52I CGGCCG 1 cut(s) 276
Eco88I CYCGRG 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 4 cut(s) 70, 149, 194, 361
FaiI YATR 6 cut(s) 11, 68, 140, 147, 192, 359
FatI CATG 4 cut(s) 66, 145, 190, 357
Fnu4HI GCNGC 3 cut(s) 276, 330, 333
Fsp4HI GCNGC 3 cut(s) 276, 330, 333
FspBI CTAG 2 cut(s) 90, 216
GluI GCNGC 3 cut(s) 276, 330, 333
HaeIII GGCC 3 cut(s) 107, 203, 278
HapII CCGG 3 cut(s) 204, 222, 279
Hin1II CATG 4 cut(s) 70, 149, 194, 361
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 1 cut(s) 263
HpaII CCGG 3 cut(s) 204, 222, 279
HphI GGTGA 2 cut(s) 65, 163
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 1 cut(s) 146
HpyAV CCTTC 2 cut(s) 13, 97
HpyCH4V TGCA 2 cut(s) 31, 187
HpyF10VI GCNNNNNNNGC 3 cut(s) 140, 167, 281
HpyF3I CTNAG 1 cut(s) 257
Hsp92II CATG 4 cut(s) 70, 149, 194, 361
Kzo9I GATC 2 cut(s) 268, 287
Lsp1109I GCAGC 2 cut(s) 316, 319
LweI GCATC 1 cut(s) 196
MaeI CTAG 2 cut(s) 90, 216
MalI GATC 2 cut(s) 270, 289
MboI GATC 2 cut(s) 268, 287
MboII GAAGA 3 cut(s) 95, 110, 335
MluCI AATT 1 cut(s) 210
MnlI CCTC 5 cut(s) 79, 142, 160, 302, 351
MseI TTAA 2 cut(s) 39, 388
MspA1I CMGCKG 1 cut(s) 275
MspI CCGG 3 cut(s) 204, 222, 279
MspR9I CCNGG 1 cut(s) 280
MwoI GCNNNNNNNGC 3 cut(s) 140, 167, 281
NciI CCSGG 1 cut(s) 280
NdeII GATC 2 cut(s) 268, 287
NlaIII CATG 4 cut(s) 70, 149, 194, 361
NmeAIII GCCGAG 1 cut(s) 133
NspI RCATGY 1 cut(s) 361
PagI TCATGA 1 cut(s) 145
PciI ACATGT 1 cut(s) 357
PfeI GAWTC 1 cut(s) 263
PkrI GCNGC 3 cut(s) 277, 331, 334
PscI ACATGT 1 cut(s) 357
SaqAI TTAA 2 cut(s) 39, 388
SatI GCNGC 3 cut(s) 276, 330, 333
Sau3AI GATC 2 cut(s) 268, 287
ScrFI CCNGG 1 cut(s) 280
SetI ASST 6 cut(s) 51, 78, 124, 145, 153, 258
SfaNI GCATC 1 cut(s) 196
Sse9I AATT 1 cut(s) 210
SsiI CCGC 3 cut(s) 63, 170, 275
SspMI CTAG 2 cut(s) 90, 216
StyD4I CCNGG 1 cut(s) 278
StyI CCWWGG 1 cut(s) 198
TasI AATT 1 cut(s) 210
TauI GCSGC 1 cut(s) 278
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 2 cut(s) 39, 388
Tru9I TTAA 2 cut(s) 39, 388
TseI GCWGC 2 cut(s) 329, 332
TspDTI ATGAA 1 cut(s) 83
XceI RCATGY 1 cut(s) 361
XspI CTAG 2 cut(s) 90, 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.