Rmu_sc0008668.1_g000011

Squamosa promoter-binding-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008668.1
OG0015686
Physical Location & Seq
Reverse (-)
53534 .. 54079
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008668.1_g000011.1.cds

Sequence Viewer

Length: 546 bp
atgatggctgcagcagggaggtttccatacctatcgtcatccccgacaggatgtagtgctctctctcttctgtcatcttccaaaagtagtagtgattcttgggtactatctccatctgatctctcctcaagatcccgcgctgcacttcgtgaactcattgcagaaaaccgtgcaggcatcttggctcgccagctcatatcttcttcggaccgatcaaactcaaactgggaggactcatcacattataataaccattcgacccaagactttggtgattatcttagccaatcatggccgtctagttctgtcgaatcccatcaccatcaccatcaccatcatcagcagcagcagcaaatgttttctgccaatcagcacagttgggacaggtttcatgaaagtggtgcacatttgacacttgatctaatgcagcagcctccgagcccggcatatgagactttcttgcctgcaagggacagtagtactaaggctgaagacgagtgtgacctctggaaatggaactccttccaaggagccagtgtggtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SBP

Protein Analysis

181

Amino Acids

20.24

Weight (kDa)

5.95

Isoelectric Point (pI)

70.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015686)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g10680
malus_domestica MD07G1111600.v1.1
prunus_persica Prupe.2G135000_v2.0.a1
pyrus_communis pycom07g09650
rosa_chinensis RchiOBHm_Chr1g0348611
rosa_laevigata RLG00000028636
rosa_multiflora Rmu_sc0008668.1_g000011 Rmu_sc0008668.1_g000012
rosa_roxburghii Rroxscaffold_4G00306890
rosa_rugosa Rorug01G0195700
rosa_samantha Rh1AG213500 Rh1BG179900 Rh1CG197800 Rh1CG197900 Rh1DG209900
rosa_wichuraiana Rw1G018080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 246
AccII CGCG 1 cut(s) 138
AciI CCGC 1 cut(s) 136
AclWI GGATC 1 cut(s) 126
AcoI YGGCCR 1 cut(s) 293
AcuI CTGAAG 1 cut(s) 510
AdeI CACNNNGTG 1 cut(s) 149
AfaI GTAC 2 cut(s) 105, 481
AluBI AGCT 1 cut(s) 193
AluI AGCT 1 cut(s) 193
Alw21I GWGCWC 2 cut(s) 61, 406
Alw26I GTCTC 1 cut(s) 446
Alw44I GTGCAC 1 cut(s) 402
AlwI GGATC 1 cut(s) 126
AoxI GGCC 1 cut(s) 293
ApaLI GTGCAC 1 cut(s) 402
ApeKI GCWGC 8 cut(s) 8, 11, 140, 343, 346, 349, 427, 430
Asp700I GAANNNNTTC 1 cut(s) 521
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 208
AsuC2I CCSGG 1 cut(s) 443
AsuHPI GGTGA 4 cut(s) 284, 311, 317, 323
AvaII GGWCC 1 cut(s) 208
BaeGI GKGCMC 1 cut(s) 406
BanII GRGCYC 1 cut(s) 443
BbsI GAAGAC 1 cut(s) 498
Bbv12I GWGCWC 2 cut(s) 61, 406
BbvI GCAGC 7 cut(s) 23, 127, 355, 358, 361, 439, 442
BccI CCATC 5 cut(s) 121, 324, 330, 336, 342
BceAI ACGGC 1 cut(s) 280
BcnI CCSGG 1 cut(s) 443
BcoDI GTCTC 1 cut(s) 446
BfaI CTAG 1 cut(s) 300
BfmI CTRYAG 1 cut(s) 9
BisI GCNGC 8 cut(s) 9, 12, 141, 344, 347, 350, 428, 431
BlsI GCNGC 8 cut(s) 10, 13, 142, 345, 348, 351, 429, 432
BmcAI AGTACT 1 cut(s) 481
Bme1390I CCNGG 1 cut(s) 443
Bme18I GGWCC 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 1 cut(s) 532
BmrFI CCNGG 1 cut(s) 443
BmrI ACTGGG 1 cut(s) 235
BmsI GCATC 1 cut(s) 186
BmuI ACTGGG 1 cut(s) 235
BpiI GAAGAC 1 cut(s) 498
BpuEI CTTGAG 1 cut(s) 112
BpuMI CCSGG 1 cut(s) 443
BsaJI CCNNGG 1 cut(s) 526
BsaXI ACNNNNNCTCC 1 cut(s) 522
Bse1I ACTGG 2 cut(s) 230, 534
Bse3DI GCAATG 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 526
BseGI GGATG 2 cut(s) 38, 56
BseMI GCAATG 1 cut(s) 156
BseNI ACTGG 2 cut(s) 230, 534
BseRI GAGGAG 1 cut(s) 115
BseSI GKGCMC 1 cut(s) 406
BseXI GCAGC 7 cut(s) 23, 127, 355, 358, 361, 439, 442
BsgI GTGCAG 2 cut(s) 126, 192
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 1 cut(s) 295
BsiHKAI GWGCWC 2 cut(s) 61, 406
BsiSI CCGG 1 cut(s) 443
BslFI GGGAC 2 cut(s) 395, 485
BsmAI GTCTC 1 cut(s) 446
BsmFI GGGAC 2 cut(s) 395, 485
BsnI GGCC 1 cut(s) 295
Bsp1286I GDGCHC 3 cut(s) 61, 406, 443
Bsp143I GATC 4 cut(s) 118, 131, 212, 418
BspACI CCGC 1 cut(s) 136
BspANI GGCC 1 cut(s) 295
BspFNI CGCG 1 cut(s) 138
BspHI TCATGA 1 cut(s) 391
BspLI GGNNCC 1 cut(s) 532
BspMAI CTGCAG 1 cut(s) 13
BspPI GGATC 1 cut(s) 126
BsrDI GCAATG 1 cut(s) 156
BsrI ACTGG 2 cut(s) 230, 534
BssECI CCNNGG 1 cut(s) 526
BssMI GATC 4 cut(s) 118, 131, 212, 418
BssT1I CCWWGG 1 cut(s) 526
Bst4CI ACNGT 3 cut(s) 170, 377, 476
Bst6I CTCTTC 1 cut(s) 72
BstC8I GCNNGC 4 cut(s) 175, 187, 191, 465
BstDEI CTNAG 2 cut(s) 281, 483
BstF5I GGATG 2 cut(s) 38, 56
BstFNI CGCG 1 cut(s) 138
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 4 cut(s) 121, 134, 215, 421
BstMAI GTCTC 1 cut(s) 446
BstMBI GATC 4 cut(s) 118, 131, 212, 418
BstMWI GCNNNNNNNGC 1 cut(s) 349
BstSCI CCNGG 1 cut(s) 441
BstSFI CTRYAG 1 cut(s) 9
BstSLI GKGCMC 1 cut(s) 406
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 7 cut(s) 23, 127, 355, 358, 361, 439, 442
BstV2I GAAGAC 1 cut(s) 498
BstX2I RGATCY 1 cut(s) 131
BstXI CCANNNNNNTGG 1 cut(s) 269
BstYI RGATCY 1 cut(s) 131
BsuRI GGCC 1 cut(s) 295
BtsCI GGATG 2 cut(s) 38, 56
BtsIMutI CAGTG 1 cut(s) 541
Cac8I GCNNGC 4 cut(s) 175, 187, 191, 465
CciI TCATGA 1 cut(s) 391
CfoI GCGC 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 208
CpoI CGGWCCG 1 cut(s) 208
Csp6I GTAC 2 cut(s) 104, 480
CspI CGGWCCG 1 cut(s) 208
CviAII CATG 2 cut(s) 291, 392
CviJI RGCY 9 cut(s) 8, 185, 193, 285, 295, 433, 441, 488, 533
CviKI_1 RGCY 9 cut(s) 8, 185, 193, 285, 295, 433, 441, 488, 533
CviQI GTAC 2 cut(s) 104, 480
DdeI CTNAG 2 cut(s) 281, 483
DpnI GATC 4 cut(s) 120, 133, 214, 420
DpnII GATC 4 cut(s) 118, 131, 212, 418
DraIII CACNNNGTG 1 cut(s) 149
EaeI YGGCCR 1 cut(s) 293
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 526
Eco24I GRGCYC 1 cut(s) 443
Eco47I GGWCC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 510
EcoT14I CCWWGG 1 cut(s) 526
EcoT38I GRGCYC 1 cut(s) 443
ErhI CCWWGG 1 cut(s) 526
FaeI CATG 2 cut(s) 294, 395
FaiI YATR 7 cut(s) 28, 197, 246, 292, 393, 448, 450
FaqI GGGAC 2 cut(s) 395, 485
FatI CATG 2 cut(s) 290, 391
FauI CCCGC 1 cut(s) 143
FauNDI CATATG 1 cut(s) 448
Fnu4HI GCNGC 8 cut(s) 9, 12, 141, 344, 347, 350, 428, 431
FokI GGATG 2 cut(s) 25, 63
FriOI GRGCYC 1 cut(s) 443
Fsp4HI GCNGC 8 cut(s) 9, 12, 141, 344, 347, 350, 428, 431
FspBI CTAG 1 cut(s) 300
GlaI GCGC 1 cut(s) 139
GluI GCNGC 8 cut(s) 9, 12, 141, 344, 347, 350, 428, 431
HaeIII GGCC 1 cut(s) 295
HapII CCGG 1 cut(s) 443
HhaI GCGC 1 cut(s) 140
Hin1II CATG 2 cut(s) 294, 395
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HinfI GANTC 3 cut(s) 95, 233, 311
HpaII CCGG 1 cut(s) 443
HphI GGTGA 4 cut(s) 284, 311, 317, 323
Hpy166II GTNNAC 2 cut(s) 152, 404
Hpy188I TCNGA 3 cut(s) 118, 208, 438
Hpy188III TCNNGA 4 cut(s) 129, 149, 392, 508
Hpy8I GTNNAC 2 cut(s) 152, 404
HpyAV CCTTC 1 cut(s) 532
HpyCH4III ACNGT 3 cut(s) 170, 377, 476
HpyCH4V TGCA 7 cut(s) 11, 143, 161, 173, 404, 427, 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 349
HpyF3I CTNAG 2 cut(s) 281, 483
Hsp92II CATG 2 cut(s) 294, 395
HspAI GCGC 1 cut(s) 138
Kzo9I GATC 4 cut(s) 118, 131, 212, 418
LmnI GCTCC 1 cut(s) 530
LpnPI CCDG 8 cut(s) 33, 159, 203, 211, 370, 456, 477, 493
Lsp1109I GCAGC 7 cut(s) 23, 127, 355, 358, 361, 439, 442
LweI GCATC 1 cut(s) 186
MaeI CTAG 1 cut(s) 300
MaeIII GTNAC 1 cut(s) 500
MalI GATC 4 cut(s) 120, 133, 214, 420
MboI GATC 4 cut(s) 118, 131, 212, 418
MboII GAAGA 5 cut(s) 59, 69, 192, 195, 503
MflI RGATCY 1 cut(s) 131
MhlI GDGCHC 3 cut(s) 61, 406, 443
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 5 cut(s) 12, 136, 223, 444, 515
MroXI GAANNNNTTC 1 cut(s) 521
MseI TTAA 1 cut(s) 544
MslI CAYNNNNRTG 1 cut(s) 396
MspI CCGG 1 cut(s) 443
MspR9I CCNGG 1 cut(s) 443
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 349
NciI CCSGG 1 cut(s) 443
NdeI CATATG 1 cut(s) 448
NdeII GATC 4 cut(s) 118, 131, 212, 418
NlaIII CATG 2 cut(s) 294, 395
NlaIV GGNNCC 1 cut(s) 532
NmuCI GTSAC 1 cut(s) 500
PagI TCATGA 1 cut(s) 391
PcsI WCGNNNNNNNCGW 1 cut(s) 41
PdmI GAANNNNTTC 1 cut(s) 521
PfeI GAWTC 2 cut(s) 95, 311
PkrI GCNGC 8 cut(s) 10, 13, 142, 345, 348, 351, 429, 432
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PsiI TTATAA 1 cut(s) 246
PspN4I GGNNCC 1 cut(s) 532
PspPI GGNCC 1 cut(s) 208
PstI CTGCAG 1 cut(s) 13
PsuI RGATCY 1 cut(s) 131
RsaI GTAC 2 cut(s) 105, 481
RsaNI GTAC 2 cut(s) 104, 480
RseI CAYNNNNRTG 1 cut(s) 396
Rsr2I CGGWCCG 1 cut(s) 208
RsrII CGGWCCG 1 cut(s) 208
SaqAI TTAA 1 cut(s) 544
SatI GCNGC 8 cut(s) 9, 12, 141, 344, 347, 350, 428, 431
Sau3AI GATC 4 cut(s) 118, 131, 212, 418
Sau96I GGNCC 1 cut(s) 208
ScaI AGTACT 1 cut(s) 481
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 443
SduI GDGCHC 3 cut(s) 61, 406, 443
SetI ASST 5 cut(s) 23, 33, 195, 389, 507
SfaNI GCATC 1 cut(s) 186
SfcI CTRYAG 1 cut(s) 9
SinI GGWCC 1 cut(s) 208
SmiMI CAYNNNNRTG 1 cut(s) 396
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
SsiI CCGC 1 cut(s) 136
SspMI CTAG 1 cut(s) 300
StyD4I CCNGG 1 cut(s) 441
StyI CCWWGG 1 cut(s) 526
TaaI ACNGT 3 cut(s) 170, 377, 476
TaqI TCGA 2 cut(s) 257, 309
TaqII GACCGA 1 cut(s) 225
TatI WGTACW 1 cut(s) 479
TfiI GAWTC 2 cut(s) 95, 311
Tru1I TTAA 1 cut(s) 544
Tru9I TTAA 1 cut(s) 544
TscAI CASTG 1 cut(s) 541
TseFI GTSAC 1 cut(s) 500
TseI GCWGC 8 cut(s) 8, 11, 140, 343, 346, 349, 427, 430
Tsp45I GTSAC 1 cut(s) 500
TspDTI ATGAA 2 cut(s) 380, 408
TspRI CASTG 1 cut(s) 541
VneI GTGCAC 1 cut(s) 402
VpaK11BI GGWCC 1 cut(s) 208
XmnI GAANNNNTTC 1 cut(s) 521
XspI CTAG 1 cut(s) 300
ZrmI AGTACT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.