Rh1CG197900

Squamosa promoter-binding-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0015686
Physical Location & Seq
Reverse (-)
43207466 .. 43210260
2795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG197900.1

Sequence Viewer

Length: 663 bp
ATGGAAATGTTTGGGCACAACATTGGTGGCAGATCAGGGCAGAATGGTAATAACGCAAATCTTGCTTGGGATATATGGGAGATGAATAATAGTAATAATAACGGCAACAACGATATATTGTACATGACGGCTGCAACAGCGGCCGTCACCATAGCGGAGCCGCCTTCCGGCTCCAGCGCGAGCTCCGAAGCGAGTTTGGGTCACCCGCTGGTGCAAAACAACAACGGTGTTCAAGCAGTGCAGCAGCACTTCCAGAATTTGTACGGTGGCGATCATCATCATCATCATCAGAGTCGTCTTCGTGGGTCCCAATACCTTCCGGATCCCCACCTTATGTGCTTGAAGCTGGGGAAGAGGCACTACTTTGAGGACGCTCCTCTGCCTCTGCTTGATCATCGAGACGTGGCGGGATTTCCTTTGGCCGTAGGGGGCATGAAGAGAGGCAAGAACATGTATGGCGCTGGCAGCCGCGGAGGTGGGGCTTCTACGCAGTCGTTGAAGGTGCCGCGGTGTCAGGTGGAGGGGTGCCACGTGGCGCTGGTGAGCGCGAAGGAGTACCACCGGCGGCACAAAGTGTGTGAGATGCACTCCAAGGCTTCCAAGGTGGTGGTCTTAGGGTTGGAGCAGCGCTTCTGTCAGCAATGCAGCAGGTCAGTTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SBP

Protein Analysis

220

Amino Acids

24.04

Weight (kDa)

8.94

Isoelectric Point (pI)

48.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 171 - 217 2.1e-17 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015686)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g10680
malus_domestica MD07G1111600.v1.1
prunus_persica Prupe.2G135000_v2.0.a1
pyrus_communis pycom07g09650
rosa_chinensis RchiOBHm_Chr1g0348611
rosa_laevigata RLG00000028636
rosa_multiflora Rmu_sc0008668.1_g000011 Rmu_sc0008668.1_g000012
rosa_roxburghii Rroxscaffold_4G00306890
rosa_rugosa Rorug01G0195700
rosa_samantha Rh1AG213500 Rh1BG179900 Rh1CG197800 Rh1CG197900 Rh1DG209900
rosa_wichuraiana Rw1G018080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 639
AccB1I GGYRCC 2 cut(s) 502, 525
AccII CGCG 4 cut(s) 179, 471, 508, 548
AccIII TCCGGA 1 cut(s) 319
AclWI GGATC 2 cut(s) 317, 330
AcoI YGGCCR 2 cut(s) 141, 420
AcsI RAATTY 1 cut(s) 256
AcvI CACGTG 1 cut(s) 532
AdeI CACNNNGTG 1 cut(s) 574
AfaI GTAC 3 cut(s) 122, 263, 557
AfeI AGCGCT 1 cut(s) 629
AfiI CCNNNNNNNGG 1 cut(s) 167
AflIII ACRYGT 1 cut(s) 450
AgsI TTSAA 3 cut(s) 233, 343, 499
AjiI CACGTC 1 cut(s) 403
AluBI AGCT 2 cut(s) 183, 346
AluI AGCT 2 cut(s) 183, 346
Alw21I GWGCWC 1 cut(s) 185
Alw26I GTCTC 1 cut(s) 393
AlwI GGATC 2 cut(s) 317, 330
Aor13HI TCCGGA 1 cut(s) 319
Aor51HI AGCGCT 1 cut(s) 629
AoxI GGCC 2 cut(s) 141, 420
ApeKI GCWGC 6 cut(s) 131, 241, 244, 465, 625, 645
ApoI RAATTY 1 cut(s) 256
AspLEI GCGC 5 cut(s) 179, 461, 538, 548, 630
AspS9I GGNCC 1 cut(s) 306
AsuHPI GGTGA 3 cut(s) 139, 194, 553
AvaII GGWCC 1 cut(s) 306
BaeGI GKGCMC 1 cut(s) 18
BamHI GGATCC 1 cut(s) 322
BanI GGYRCC 2 cut(s) 502, 525
BanII GRGCYC 1 cut(s) 185
BarI GAAGNNNNNNTAC 2 cut(s) 344, 376
BbrPI CACGTG 1 cut(s) 532
BbsI GAAGAC 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 185
BbvI GCAGC 6 cut(s) 118, 253, 256, 477, 637, 657
BceAI ACGGC 4 cut(s) 118, 128, 144, 407
BclI TGATCA 1 cut(s) 391
BcoDI GTCTC 1 cut(s) 393
BfoI RGCGCY 3 cut(s) 462, 539, 631
BfuAI ACCTGC 1 cut(s) 639
Bme18I GGWCC 1 cut(s) 306
BmgBI CACGTC 1 cut(s) 403
BmgT120I GGNCC 1 cut(s) 306
BmiI GGNNCC 7 cut(s) 159, 172, 307, 308, 324, 504, 527
BmsI GCATC 1 cut(s) 573
BpiI GAAGAC 1 cut(s) 290
BplI GAGNNNNNCTC 2 cut(s) 572, 604
BpmI CTGGAG 1 cut(s) 157
BsaAI YACGTR 1 cut(s) 532
BsaBI GATNNNNATC 1 cut(s) 276
BsaJI CCNNGG 4 cut(s) 469, 506, 591, 600
BsaWI WCCGGW 1 cut(s) 319
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse118I RCCGGY 1 cut(s) 561
Bse3DI GCAATG 1 cut(s) 647
Bse8I GATNNNNATC 1 cut(s) 276
BseAI TCCGGA 1 cut(s) 319
BseDI CCNNGG 4 cut(s) 469, 506, 591, 600
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMI GCAATG 1 cut(s) 647
BseRI GAGGAG 1 cut(s) 366
BseSI GKGCMC 1 cut(s) 18
BseX3I CGGCCG 1 cut(s) 141
BseXI GCAGC 6 cut(s) 118, 253, 256, 477, 637, 657
BseYI CCCAGC 1 cut(s) 346
BsgI GTGCAG 1 cut(s) 260
Bsh1236I CGCG 4 cut(s) 179, 471, 508, 548
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 2 cut(s) 143, 422
BshNI GGYRCC 2 cut(s) 502, 525
BsiEI CGRYCG 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 185
BsiSI CCGG 3 cut(s) 168, 320, 562
BslFI GGGAC 1 cut(s) 292
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 1 cut(s) 393
BsmBI CGTCTC 1 cut(s) 393
BsmFI GGGAC 1 cut(s) 292
BsnI GGCC 2 cut(s) 143, 422
Bsp1286I GDGCHC 2 cut(s) 18, 185
Bsp13I TCCGGA 1 cut(s) 319
Bsp1407I TGTACA 1 cut(s) 120
Bsp143I GATC 4 cut(s) 32, 271, 322, 391
BspANI GGCC 2 cut(s) 143, 422
BspEI TCCGGA 1 cut(s) 319
BspFNI CGCG 4 cut(s) 179, 471, 508, 548
BspLI GGNNCC 7 cut(s) 159, 172, 307, 308, 324, 504, 527
BspMI ACCTGC 1 cut(s) 639
BspPI GGATC 2 cut(s) 317, 330
BspT107I GGYRCC 2 cut(s) 502, 525
BsrDI GCAATG 1 cut(s) 647
BsrFI RCCGGY 1 cut(s) 561
BsrGI TGTACA 1 cut(s) 120
BssAI RCCGGY 1 cut(s) 561
BssECI CCNNGG 4 cut(s) 469, 506, 591, 600
BssMI GATC 4 cut(s) 32, 271, 322, 391
BssT1I CCWWGG 2 cut(s) 591, 600
Bst4CI ACNGT 2 cut(s) 227, 266
Bst6I CTCTTC 2 cut(s) 347, 431
BstAPI GCANNNNNTGC 1 cut(s) 62
BstAUI TGTACA 1 cut(s) 120
BstBAI YACGTR 1 cut(s) 532
BstC8I GCNNGC 2 cut(s) 181, 463
BstDEI CTNAG 1 cut(s) 613
BstDSI CCRYGG 2 cut(s) 469, 506
BstEII GGTNACC 1 cut(s) 200
BstFNI CGCG 4 cut(s) 179, 471, 508, 548
BstH2I RGCGCY 3 cut(s) 462, 539, 631
BstHHI GCGC 5 cut(s) 179, 461, 538, 548, 630
BstKTI GATC 4 cut(s) 35, 274, 325, 394
BstMAI GTCTC 1 cut(s) 393
BstMBI GATC 4 cut(s) 32, 271, 322, 391
BstMCI CGRYCG 1 cut(s) 144
BstMWI GCNNNNNNNGC 4 cut(s) 62, 137, 140, 465
BstNSI RCATGY 1 cut(s) 454
BstPI GGTNACC 1 cut(s) 200
BstSLI GKGCMC 1 cut(s) 18
BstUI CGCG 4 cut(s) 179, 471, 508, 548
BstV1I GCAGC 6 cut(s) 118, 253, 256, 477, 637, 657
BstV2I GAAGAC 1 cut(s) 290
BstX2I RGATCY 1 cut(s) 322
BstXI CCANNNNNNTGG 1 cut(s) 607
BstYI RGATCY 1 cut(s) 322
BstZI CGGCCG 1 cut(s) 141
BsuRI GGCC 2 cut(s) 143, 422
BtgI CCRYGG 2 cut(s) 469, 506
BtrI CACGTC 1 cut(s) 403
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 1 cut(s) 243
BveI ACCTGC 1 cut(s) 639
Cac8I GCNNGC 2 cut(s) 181, 463
CfoI GCGC 5 cut(s) 179, 461, 538, 548, 630
Cfr10I RCCGGY 1 cut(s) 561
Cfr13I GGNCC 1 cut(s) 306
Cfr42I CCGCGG 2 cut(s) 472, 509
CseI GACGC 1 cut(s) 380
Csp6I GTAC 3 cut(s) 121, 262, 556
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 3 cut(s) 124, 433, 451
CviQI GTAC 3 cut(s) 121, 262, 556
DdeI CTNAG 1 cut(s) 613
DpnI GATC 4 cut(s) 34, 273, 324, 393
DpnII GATC 4 cut(s) 32, 271, 322, 391
DraIII CACNNNGTG 1 cut(s) 574
EaeI YGGCCR 2 cut(s) 141, 420
EagI CGGCCG 1 cut(s) 141
Eam1104I CTCTTC 2 cut(s) 347, 431
EarI CTCTTC 2 cut(s) 347, 431
Ecl136II GAGCTC 1 cut(s) 183
EclXI CGGCCG 1 cut(s) 141
Eco130I CCWWGG 2 cut(s) 591, 600
Eco24I GRGCYC 1 cut(s) 185
Eco47I GGWCC 1 cut(s) 306
Eco47III AGCGCT 1 cut(s) 629
Eco52I CGGCCG 1 cut(s) 141
Eco53kI GAGCTC 1 cut(s) 183
Eco72I CACGTG 1 cut(s) 532
Eco91I GGTNACC 1 cut(s) 200
EcoICRI GAGCTC 1 cut(s) 183
EcoO109I RGGNCCY 1 cut(s) 306
EcoO65I GGTNACC 1 cut(s) 200
EcoT14I CCWWGG 2 cut(s) 591, 600
EcoT38I GRGCYC 1 cut(s) 185
ErhI CCWWGG 2 cut(s) 591, 600
Esp3I CGTCTC 1 cut(s) 393
FaeI CATG 3 cut(s) 127, 436, 454
FaiI YATR 9 cut(s) 74, 76, 116, 125, 152, 335, 434, 452, 456
FaqI GGGAC 1 cut(s) 292
FatI CATG 3 cut(s) 123, 432, 450
FauI CCCGC 2 cut(s) 213, 400
FbaI TGATCA 1 cut(s) 391
FriOI GRGCYC 1 cut(s) 185
GlaI GCGC 5 cut(s) 178, 460, 537, 547, 629
GsaI CCCAGC 1 cut(s) 350
GsuI CTGGAG 1 cut(s) 157
HaeII RGCGCY 3 cut(s) 462, 539, 631
HaeIII GGCC 2 cut(s) 143, 422
HapII CCGG 3 cut(s) 168, 320, 562
HgaI GACGC 1 cut(s) 380
HhaI GCGC 5 cut(s) 179, 461, 538, 548, 630
Hin1II CATG 3 cut(s) 127, 436, 454
Hin6I GCGC 5 cut(s) 177, 459, 536, 546, 628
HinP1I GCGC 5 cut(s) 177, 459, 536, 546, 628
HinfI GANTC 1 cut(s) 292
HpaII CCGG 3 cut(s) 168, 320, 562
HphI GGTGA 3 cut(s) 139, 194, 553
Hpy188I TCNGA 2 cut(s) 187, 291
Hpy188III TCNNGA 3 cut(s) 253, 320, 398
HpyAV CCTTC 4 cut(s) 174, 326, 493, 544
HpyCH4III ACNGT 2 cut(s) 227, 266
HpyCH4IV ACGT 2 cut(s) 402, 531
HpyCH4V TGCA 5 cut(s) 134, 214, 241, 586, 645
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 137, 140, 465
HpyF3I CTNAG 1 cut(s) 613
HpySE526I ACGT 2 cut(s) 402, 531
Hsp92II CATG 3 cut(s) 127, 436, 454
HspAI GCGC 5 cut(s) 177, 459, 536, 546, 628
KflI GGGWCCC 1 cut(s) 306
Kpn2I TCCGGA 1 cut(s) 319
Ksp22I TGATCA 1 cut(s) 391
KspI CCGCGG 2 cut(s) 472, 509
Kzo9I GATC 4 cut(s) 32, 271, 322, 391
LmnI GCTCC 5 cut(s) 157, 176, 188, 379, 622
Lsp1109I GCAGC 6 cut(s) 118, 253, 256, 477, 637, 657
LweI GCATC 1 cut(s) 573
MaeII ACGT 2 cut(s) 402, 531
MaeIII GTNAC 2 cut(s) 145, 200
MalI GATC 4 cut(s) 34, 273, 324, 393
MboI GATC 4 cut(s) 32, 271, 322, 391
MboII GAAGA 3 cut(s) 290, 364, 448
MflI RGATCY 1 cut(s) 322
MhlI GDGCHC 2 cut(s) 18, 185
MluCI AATT 1 cut(s) 256
MlyI GAGTC 1 cut(s) 301
MmeI TCCRAC 1 cut(s) 600
MnlI CCTC 7 cut(s) 348, 361, 387, 393, 434, 467, 514
MroI TCCGGA 1 cut(s) 319
MspA1I CMGCKG 4 cut(s) 140, 208, 471, 508
MspI CCGG 3 cut(s) 168, 320, 562
MvnI CGCG 4 cut(s) 179, 471, 508, 548
MwoI GCNNNNNNNGC 4 cut(s) 62, 137, 140, 465
NdeII GATC 4 cut(s) 32, 271, 322, 391
NlaIII CATG 3 cut(s) 127, 436, 454
NlaIV GGNNCC 7 cut(s) 159, 172, 307, 308, 324, 504, 527
NmuCI GTSAC 2 cut(s) 145, 200
NspI RCATGY 1 cut(s) 454
PciI ACATGT 1 cut(s) 450
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PleI GAGTC 1 cut(s) 300
PmaCI CACGTG 1 cut(s) 532
PmlI CACGTG 1 cut(s) 532
PpsI GAGTC 1 cut(s) 300
Ppu21I YACGTR 1 cut(s) 532
PpuMI RGGWCCY 1 cut(s) 306
PscI ACATGT 1 cut(s) 450
Psp124BI GAGCTC 1 cut(s) 185
Psp5II RGGWCCY 1 cut(s) 306
PspCI CACGTG 1 cut(s) 532
PspEI GGTNACC 1 cut(s) 200
PspFI CCCAGC 1 cut(s) 346
PspN4I GGNNCC 7 cut(s) 159, 172, 307, 308, 324, 504, 527
PspPI GGNCC 1 cut(s) 306
PspPPI RGGWCCY 1 cut(s) 306
PsuI RGATCY 1 cut(s) 322
RsaI GTAC 3 cut(s) 122, 263, 557
RsaNI GTAC 3 cut(s) 121, 262, 556
SacI GAGCTC 1 cut(s) 185
SacII CCGCGG 2 cut(s) 472, 509
Sau3AI GATC 4 cut(s) 32, 271, 322, 391
Sau96I GGNCC 1 cut(s) 306
SchI GAGTC 1 cut(s) 301
SduI GDGCHC 2 cut(s) 18, 185
SfaNI GCATC 1 cut(s) 573
Sfr303I CCGCGG 2 cut(s) 472, 509
SgrAI CRCCGGYG 1 cut(s) 561
SgrBI CCGCGG 2 cut(s) 472, 509
SinI GGWCC 1 cut(s) 306
Sse9I AATT 1 cut(s) 256
SstI GAGCTC 1 cut(s) 185
StyI CCWWGG 2 cut(s) 591, 600
TaaI ACNGT 2 cut(s) 227, 266
TaiI ACGT 2 cut(s) 405, 534
TaqI TCGA 1 cut(s) 397
TasI AATT 1 cut(s) 256
TatI WGTACW 1 cut(s) 120
TauI GCSGC 5 cut(s) 143, 163, 471, 508, 568
TscAI CASTG 1 cut(s) 243
TseFI GTSAC 2 cut(s) 145, 200
TseI GCWGC 6 cut(s) 131, 241, 244, 465, 625, 645
Tsp45I GTSAC 2 cut(s) 145, 200
TspDTI ATGAA 3 cut(s) 98, 449, 647
TspRI CASTG 1 cut(s) 243
VpaK11BI GGWCC 1 cut(s) 306
XapI RAATTY 1 cut(s) 256
XceI RCATGY 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.