Rmu_sc0008668.1_g000012

Squamosa promoter-binding-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008668.1
OG0015686
Physical Location & Seq
Reverse (-)
56639 .. 57286
648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008668.1_g000012.1.cds

Sequence Viewer

Length: 648 bp
atgtttgggcacaacattggtggcagatcagggcagaatggtaataacgcaaatcttgcttgggatatatgggagatgaataatagtaataataatggcaacaacgatatattgtacatgacggctgcaacagcggccgtcaccatagcggagccgccttccggctccagcgcgagctccgaagcgagtttgggtcacccgctggtgcacaacaacaacggtgttcaagcagtgcagcagcacttccagaatttgtacggtggcgatcatcatcagagtcgtcttcgtgggtcccaataccttccggatccccaccttatgtgcttgaagctggggaagaggcactactttgaggacgctcctctgcctctgcttgatcatcgagacgtggcgggatttcctttggccgtagggggcatgaagagaggcaagaacatgtatggcgctggcagccgcggaggtggggcttctacgcagtcgttgaaggtgccgcggtgtcaggtggaggggtgccacgtggcgctggtgagcgcgaaggagtaccaccggcggcacaaagtgtgtgagatgcactccaaggcttccaaggtggtggtcttagggttggagcagcgcttctgtcagcaatgcagcaggtcagttcattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SBP

Protein Analysis

215

Amino Acids

23.38

Weight (kDa)

9.1

Isoelectric Point (pI)

50.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015686)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g10680
malus_domestica MD07G1111600.v1.1
prunus_persica Prupe.2G135000_v2.0.a1
pyrus_communis pycom07g09650
rosa_chinensis RchiOBHm_Chr1g0348611
rosa_laevigata RLG00000028636
rosa_multiflora Rmu_sc0008668.1_g000011 Rmu_sc0008668.1_g000012
rosa_roxburghii Rroxscaffold_4G00306890
rosa_rugosa Rorug01G0195700
rosa_samantha Rh1AG213500 Rh1BG179900 Rh1CG197800 Rh1CG197900 Rh1DG209900
rosa_wichuraiana Rw1G018080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 624
AccB1I GGYRCC 2 cut(s) 487, 510
AccII CGCG 4 cut(s) 173, 456, 493, 533
AccIII TCCGGA 1 cut(s) 304
AclWI GGATC 2 cut(s) 302, 315
AcoI YGGCCR 2 cut(s) 135, 405
AcsI RAATTY 1 cut(s) 250
AcvI CACGTG 1 cut(s) 517
AdeI CACNNNGTG 1 cut(s) 559
AfaI GTAC 3 cut(s) 116, 257, 542
AfeI AGCGCT 1 cut(s) 614
AfiI CCNNNNNNNGG 1 cut(s) 161
AflIII ACRYGT 1 cut(s) 435
AgsI TTSAA 3 cut(s) 227, 328, 484
AjiI CACGTC 1 cut(s) 388
AluBI AGCT 2 cut(s) 177, 331
AluI AGCT 2 cut(s) 177, 331
Alw21I GWGCWC 2 cut(s) 179, 210
Alw26I GTCTC 1 cut(s) 378
Alw44I GTGCAC 1 cut(s) 206
AlwI GGATC 2 cut(s) 302, 315
Aor13HI TCCGGA 1 cut(s) 304
Aor51HI AGCGCT 1 cut(s) 614
AoxI GGCC 2 cut(s) 135, 405
ApaLI GTGCAC 1 cut(s) 206
ApeKI GCWGC 6 cut(s) 125, 235, 238, 450, 610, 630
ApoI RAATTY 1 cut(s) 250
AspLEI GCGC 5 cut(s) 173, 446, 523, 533, 615
AspS9I GGNCC 1 cut(s) 291
AsuHPI GGTGA 3 cut(s) 133, 188, 538
AvaII GGWCC 1 cut(s) 291
BaeGI GKGCMC 2 cut(s) 12, 210
BamHI GGATCC 1 cut(s) 307
BanI GGYRCC 2 cut(s) 487, 510
BanII GRGCYC 1 cut(s) 179
BarI GAAGNNNNNNTAC 2 cut(s) 329, 361
BbrPI CACGTG 1 cut(s) 517
BbsI GAAGAC 1 cut(s) 275
Bbv12I GWGCWC 2 cut(s) 179, 210
BbvI GCAGC 6 cut(s) 112, 247, 250, 462, 622, 642
BceAI ACGGC 3 cut(s) 122, 138, 392
BclI TGATCA 1 cut(s) 376
BcoDI GTCTC 1 cut(s) 378
BfoI RGCGCY 3 cut(s) 447, 524, 616
BfuAI ACCTGC 1 cut(s) 624
Bme18I GGWCC 1 cut(s) 291
BmgBI CACGTC 1 cut(s) 388
BmgT120I GGNCC 1 cut(s) 291
BmiI GGNNCC 7 cut(s) 153, 166, 292, 293, 309, 489, 512
BmsI GCATC 1 cut(s) 558
BpiI GAAGAC 1 cut(s) 275
BplI GAGNNNNNCTC 2 cut(s) 557, 589
BpmI CTGGAG 1 cut(s) 151
BsaAI YACGTR 1 cut(s) 517
BsaBI GATNNNNATC 1 cut(s) 270
BsaJI CCNNGG 4 cut(s) 454, 491, 576, 585
BsaWI WCCGGW 1 cut(s) 304
Bsc4I CCNNNNNNNGG 1 cut(s) 161
Bse118I RCCGGY 1 cut(s) 546
Bse3DI GCAATG 1 cut(s) 632
Bse8I GATNNNNATC 1 cut(s) 270
BseAI TCCGGA 1 cut(s) 304
BseDI CCNNGG 4 cut(s) 454, 491, 576, 585
BseJI GATNNNNATC 1 cut(s) 270
BseLI CCNNNNNNNGG 1 cut(s) 161
BseMI GCAATG 1 cut(s) 632
BseRI GAGGAG 1 cut(s) 351
BseSI GKGCMC 2 cut(s) 12, 210
BseX3I CGGCCG 1 cut(s) 135
BseXI GCAGC 6 cut(s) 112, 247, 250, 462, 622, 642
BseYI CCCAGC 1 cut(s) 331
BsgI GTGCAG 1 cut(s) 254
Bsh1236I CGCG 4 cut(s) 173, 456, 493, 533
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 2 cut(s) 137, 407
BshNI GGYRCC 2 cut(s) 487, 510
BsiEI CGRYCG 1 cut(s) 138
BsiHKAI GWGCWC 2 cut(s) 179, 210
BsiSI CCGG 3 cut(s) 162, 305, 547
BslFI GGGAC 1 cut(s) 277
BslI CCNNNNNNNGG 1 cut(s) 161
BsmAI GTCTC 1 cut(s) 378
BsmBI CGTCTC 1 cut(s) 378
BsmFI GGGAC 1 cut(s) 277
BsnI GGCC 2 cut(s) 137, 407
Bsp1286I GDGCHC 3 cut(s) 12, 179, 210
Bsp13I TCCGGA 1 cut(s) 304
Bsp1407I TGTACA 1 cut(s) 114
Bsp143I GATC 4 cut(s) 26, 265, 307, 376
BspANI GGCC 2 cut(s) 137, 407
BspEI TCCGGA 1 cut(s) 304
BspFNI CGCG 4 cut(s) 173, 456, 493, 533
BspLI GGNNCC 7 cut(s) 153, 166, 292, 293, 309, 489, 512
BspMI ACCTGC 1 cut(s) 624
BspPI GGATC 2 cut(s) 302, 315
BspT107I GGYRCC 2 cut(s) 487, 510
BsrDI GCAATG 1 cut(s) 632
BsrFI RCCGGY 1 cut(s) 546
BsrGI TGTACA 1 cut(s) 114
BssAI RCCGGY 1 cut(s) 546
BssECI CCNNGG 4 cut(s) 454, 491, 576, 585
BssMI GATC 4 cut(s) 26, 265, 307, 376
BssT1I CCWWGG 2 cut(s) 576, 585
Bst4CI ACNGT 2 cut(s) 221, 260
Bst6I CTCTTC 2 cut(s) 332, 416
BstAPI GCANNNNNTGC 1 cut(s) 56
BstAUI TGTACA 1 cut(s) 114
BstBAI YACGTR 1 cut(s) 517
BstC8I GCNNGC 2 cut(s) 175, 448
BstDEI CTNAG 1 cut(s) 598
BstDSI CCRYGG 2 cut(s) 454, 491
BstEII GGTNACC 1 cut(s) 194
BstFNI CGCG 4 cut(s) 173, 456, 493, 533
BstH2I RGCGCY 3 cut(s) 447, 524, 616
BstHHI GCGC 5 cut(s) 173, 446, 523, 533, 615
BstKTI GATC 4 cut(s) 29, 268, 310, 379
BstMAI GTCTC 1 cut(s) 378
BstMBI GATC 4 cut(s) 26, 265, 307, 376
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 4 cut(s) 56, 131, 134, 450
BstNSI RCATGY 1 cut(s) 439
BstPI GGTNACC 1 cut(s) 194
BstSLI GKGCMC 2 cut(s) 12, 210
BstUI CGCG 4 cut(s) 173, 456, 493, 533
BstV1I GCAGC 6 cut(s) 112, 247, 250, 462, 622, 642
BstV2I GAAGAC 1 cut(s) 275
BstX2I RGATCY 1 cut(s) 307
BstXI CCANNNNNNTGG 1 cut(s) 592
BstYI RGATCY 1 cut(s) 307
BstZI CGGCCG 1 cut(s) 135
BsuRI GGCC 2 cut(s) 137, 407
BtgI CCRYGG 2 cut(s) 454, 491
BtrI CACGTC 1 cut(s) 388
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 1 cut(s) 237
BveI ACCTGC 1 cut(s) 624
Cac8I GCNNGC 2 cut(s) 175, 448
CfoI GCGC 5 cut(s) 173, 446, 523, 533, 615
Cfr10I RCCGGY 1 cut(s) 546
Cfr13I GGNCC 1 cut(s) 291
Cfr42I CCGCGG 2 cut(s) 457, 494
CseI GACGC 1 cut(s) 365
Csp6I GTAC 3 cut(s) 115, 256, 541
CspCI CAANNNNNGTGG 1 cut(s) 36
CviAII CATG 3 cut(s) 118, 418, 436
CviQI GTAC 3 cut(s) 115, 256, 541
DdeI CTNAG 1 cut(s) 598
DpnI GATC 4 cut(s) 28, 267, 309, 378
DpnII GATC 4 cut(s) 26, 265, 307, 376
DraIII CACNNNGTG 1 cut(s) 559
EaeI YGGCCR 2 cut(s) 135, 405
EagI CGGCCG 1 cut(s) 135
Eam1104I CTCTTC 2 cut(s) 332, 416
EarI CTCTTC 2 cut(s) 332, 416
Ecl136II GAGCTC 1 cut(s) 177
EclXI CGGCCG 1 cut(s) 135
Eco130I CCWWGG 2 cut(s) 576, 585
Eco24I GRGCYC 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 291
Eco47III AGCGCT 1 cut(s) 614
Eco52I CGGCCG 1 cut(s) 135
Eco53kI GAGCTC 1 cut(s) 177
Eco72I CACGTG 1 cut(s) 517
Eco91I GGTNACC 1 cut(s) 194
EcoICRI GAGCTC 1 cut(s) 177
EcoO109I RGGNCCY 1 cut(s) 291
EcoO65I GGTNACC 1 cut(s) 194
EcoT14I CCWWGG 2 cut(s) 576, 585
EcoT38I GRGCYC 1 cut(s) 179
ErhI CCWWGG 2 cut(s) 576, 585
Esp3I CGTCTC 1 cut(s) 378
FaeI CATG 3 cut(s) 121, 421, 439
FaiI YATR 9 cut(s) 68, 70, 110, 119, 146, 320, 419, 437, 441
FaqI GGGAC 1 cut(s) 277
FatI CATG 3 cut(s) 117, 417, 435
FauI CCCGC 2 cut(s) 207, 385
FbaI TGATCA 1 cut(s) 376
FriOI GRGCYC 1 cut(s) 179
GlaI GCGC 5 cut(s) 172, 445, 522, 532, 614
GsaI CCCAGC 1 cut(s) 335
GsuI CTGGAG 1 cut(s) 151
HaeII RGCGCY 3 cut(s) 447, 524, 616
HaeIII GGCC 2 cut(s) 137, 407
HapII CCGG 3 cut(s) 162, 305, 547
HgaI GACGC 1 cut(s) 365
HhaI GCGC 5 cut(s) 173, 446, 523, 533, 615
Hin1II CATG 3 cut(s) 121, 421, 439
Hin6I GCGC 5 cut(s) 171, 444, 521, 531, 613
HinP1I GCGC 5 cut(s) 171, 444, 521, 531, 613
HinfI GANTC 1 cut(s) 277
HpaII CCGG 3 cut(s) 162, 305, 547
HphI GGTGA 3 cut(s) 133, 188, 538
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 2 cut(s) 181, 276
Hpy188III TCNNGA 3 cut(s) 247, 305, 383
Hpy8I GTNNAC 1 cut(s) 208
HpyAV CCTTC 4 cut(s) 168, 311, 478, 529
HpyCH4III ACNGT 2 cut(s) 221, 260
HpyCH4IV ACGT 2 cut(s) 387, 516
HpyCH4V TGCA 5 cut(s) 128, 208, 235, 571, 630
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 131, 134, 450
HpyF3I CTNAG 1 cut(s) 598
HpySE526I ACGT 2 cut(s) 387, 516
Hsp92II CATG 3 cut(s) 121, 421, 439
HspAI GCGC 5 cut(s) 171, 444, 521, 531, 613
KflI GGGWCCC 1 cut(s) 291
Kpn2I TCCGGA 1 cut(s) 304
Ksp22I TGATCA 1 cut(s) 376
KspI CCGCGG 2 cut(s) 457, 494
Kzo9I GATC 4 cut(s) 26, 265, 307, 376
LmnI GCTCC 5 cut(s) 151, 170, 182, 364, 607
Lsp1109I GCAGC 6 cut(s) 112, 247, 250, 462, 622, 642
LweI GCATC 1 cut(s) 558
MaeII ACGT 2 cut(s) 387, 516
MaeIII GTNAC 2 cut(s) 139, 194
MalI GATC 4 cut(s) 28, 267, 309, 378
MboI GATC 4 cut(s) 26, 265, 307, 376
MboII GAAGA 3 cut(s) 275, 349, 433
MflI RGATCY 1 cut(s) 307
MhlI GDGCHC 3 cut(s) 12, 179, 210
MluCI AATT 1 cut(s) 250
MlyI GAGTC 1 cut(s) 286
MmeI TCCRAC 1 cut(s) 585
MnlI CCTC 7 cut(s) 333, 346, 372, 378, 419, 452, 499
MroI TCCGGA 1 cut(s) 304
MspA1I CMGCKG 4 cut(s) 134, 202, 456, 493
MspI CCGG 3 cut(s) 162, 305, 547
MvnI CGCG 4 cut(s) 173, 456, 493, 533
MwoI GCNNNNNNNGC 4 cut(s) 56, 131, 134, 450
NdeII GATC 4 cut(s) 26, 265, 307, 376
NlaIII CATG 3 cut(s) 121, 421, 439
NlaIV GGNNCC 7 cut(s) 153, 166, 292, 293, 309, 489, 512
NmuCI GTSAC 2 cut(s) 139, 194
NspI RCATGY 1 cut(s) 439
PciI ACATGT 1 cut(s) 435
PleI GAGTC 1 cut(s) 285
PmaCI CACGTG 1 cut(s) 517
PmlI CACGTG 1 cut(s) 517
PpsI GAGTC 1 cut(s) 285
Ppu21I YACGTR 1 cut(s) 517
PpuMI RGGWCCY 1 cut(s) 291
PscI ACATGT 1 cut(s) 435
Psp124BI GAGCTC 1 cut(s) 179
Psp5II RGGWCCY 1 cut(s) 291
PspCI CACGTG 1 cut(s) 517
PspEI GGTNACC 1 cut(s) 194
PspFI CCCAGC 1 cut(s) 331
PspN4I GGNNCC 7 cut(s) 153, 166, 292, 293, 309, 489, 512
PspPI GGNCC 1 cut(s) 291
PspPPI RGGWCCY 1 cut(s) 291
PsuI RGATCY 1 cut(s) 307
RsaI GTAC 3 cut(s) 116, 257, 542
RsaNI GTAC 3 cut(s) 115, 256, 541
SacI GAGCTC 1 cut(s) 179
SacII CCGCGG 2 cut(s) 457, 494
Sau3AI GATC 4 cut(s) 26, 265, 307, 376
Sau96I GGNCC 1 cut(s) 291
SchI GAGTC 1 cut(s) 286
SduI GDGCHC 3 cut(s) 12, 179, 210
SfaNI GCATC 1 cut(s) 558
Sfr303I CCGCGG 2 cut(s) 457, 494
SgrAI CRCCGGYG 1 cut(s) 546
SgrBI CCGCGG 2 cut(s) 457, 494
SinI GGWCC 1 cut(s) 291
Sse9I AATT 1 cut(s) 250
SstI GAGCTC 1 cut(s) 179
StyI CCWWGG 2 cut(s) 576, 585
TaaI ACNGT 2 cut(s) 221, 260
TaiI ACGT 2 cut(s) 390, 519
TaqI TCGA 1 cut(s) 382
TasI AATT 1 cut(s) 250
TatI WGTACW 1 cut(s) 114
TauI GCSGC 5 cut(s) 137, 157, 456, 493, 553
TscAI CASTG 1 cut(s) 237
TseFI GTSAC 2 cut(s) 139, 194
TseI GCWGC 6 cut(s) 125, 235, 238, 450, 610, 630
Tsp45I GTSAC 2 cut(s) 139, 194
TspDTI ATGAA 3 cut(s) 92, 434, 632
TspRI CASTG 1 cut(s) 237
VneI GTGCAC 1 cut(s) 206
VpaK11BI GGWCC 1 cut(s) 291
XapI RAATTY 1 cut(s) 250
XceI RCATGY 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.