MD07G1126900.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0016644
Physical Location & Seq
Forward (+)
17931496 .. 17934401
2906 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1126900.v1.1.491

Sequence Viewer

Length: 2466 bp
ATGATCTACACGGCCATTGAAAAGCGAAAGCTGGTTATGAACAAATTCAATTCAATTTTTTTCAATTATTCCCATCAATCCAGATTCAATCACAGAGGACTGACCCGTTTCCTCCGCAGCACTGTGGATTCAACGGAGTCTAAGTTTCACTCCAATTTACTTCTCAATGAGCTGTCTAAATCCGGCCGAGTCGACGAGGCGCGCCAGATGTTCGATAAAATGCCGAGCAGGGATGAGTTTTCTTGGAACACTATGATAGCTGCTTATGCTAACTCAGGAAGACTAGCTGAAGCAAAACAACTCTTTGATGCGACCCCAAGTAAAAACTCCATCACATGGTCGTCATTGATATCTGGGTACTGCCGAAATGAGAGCGAAAGTGAAGCTTTCGAGTTGTTTTGGCGAATGCAGTTCGAGGGGCATAAGCCCAGCCAGTACACGTTGGGCAGTGTTCTGAGGTTGTGTTCAACACTGGGTTTGCTCCAGAGAGGTGCGCTTGTTCATGGTTATATGACAAAGACCCAATTTGACAATAATATTTTCGTTGTCACGGGTTTGGTGGACATGTATGCAAAGTGCAAGCGCATTTCAGAAGCTGAGTATCTCTTTGAGACTCTGTTTGATAGGAAAAACCACGTTTTGTGGACTGTCATGCTTACTGGGTACTCTCAGAATGGTGATGGGTTTAAGGCAATGAAGTTTTTCCGAGACATGCGAGCAGAAGGGGTTGAATCCAATCAGTTTACGTTCCCTAGTGTATTGACAGCTTCTGCGTCGGTCTTGGCACATAGTTTCGGAGCTCAGGTGCACGGATGTGTTGTTCAGAGTGGTCTCGGAGCTAATGTGTTTGTCCAAAGTTCCTTGGTTGACATGTATGTCAAATGTGGAGACCTTAATAGTGCAAAGAAGGCATTGAGAAGCATGGAGGTTGACAATGTTGTTTCTTGGAACTCCATGATTGTGGGTTGTGTAAGGCAGGGGTTTGCAGAAGAAGCTTTGTCCTTGTTTAAAGATATGCGGTCGAGAGAAATGAAGATTGATCATTTTACGTATCCATCTGTTCTAAACTCCTTTGCTGTGATGAAGGACATGACAAATGCAATGTCTATCCATTGTTTGATAATCAAGACTGGTTTTGACGTTTATCAACTTGTGGGAAATGCTCTCGTTGATATGTATGCTAAGCAGGGGAACATAGATGCTGCGGTTGAGGTGTTTAAGTGTATGTCAGACAAGGATGTTATCTCATGGACCTCCCTGATCACAGGCTATGTACGTAATGGCTCTCATGAAAAAGCACTTAGATTGTTCTGTGAGATGAGAACTGCAGGGATCTATCCCGACCAGTTTGTAATTGCCAGCGCTTTGAGTGCCTCTGCCGAACTGACAGTTCTGGAATTTGGCCAACAAATTCATGCAAACTTTATTAAGTCCGGCCTTCAAGCCTCCTTATCAGTAGATAATTCCTTTGTAGCAATGTATGCAAAATGTGGGTGCATAGAAGACGCCAATAAAGTTTTCGACTCTATGCAAGTTCAAGATGTGATTACTTGGACAGCTTTGATAGTTGGTTATGCCCAGAATGGAAGAGGAAAGGAGTCCCTAAAGTTTTATGATCAAATGATTTTAACTGGCGCAGAACCAGACTTCATTACCTTTATCGGCTTAATATTTGCTTGTAGCCATGCTGGTCTTCTGGAAAAAGGTCGGTACTACTTTGAATTGATGAGTAGGGTTTATGGAATACAACCAGGTTCGGAGCACTATGCGTGCATGATTGACCTCTTGGGGCGCTCAGGGAAGCTTAATGAGGCCGAAGCATTAGTAAATAAAATGGTTGTGGAACCGGATGGAACTGTATGGAAGGCACTGCTTGCTGCGTGTAGAGTACACGGGAACATAGAACTTGGAGAGCGGGCAGCAATGAACCTTTTCAAATTGGAACCTCTAAATGCTGTGCCTTATGTTCAGTTATCTAACATGTATTCTGCGGCTTCTAGATGGGAAGATGCTGCAAGAATCCGAAGATTGATGAAATCAAAGGGAATTCTTAAGGAGCCTGGATGCAGCTGGATTGAGACGAACAGCCAAGTGCATACCTTTATGTCTGAAGATAGAAGCCATTCGAGGACGGCTGAAATATATTCAAAGGTTGATGAGATCATGATGTTGATCAAGGAAGCTGGATACGTGCCAGATATGAATTTTGCGCTTCATGACATGGATAAAGAGGGTAAAGAGCTTGGCCTAGCGTATCACAGTGAGAAGTTGGCTGTTGCTTTCGGGCTTCTCACCACACCACCAGGGGCACCAATCCGAATTTTTAAGAATCTCCGGGTTTGTGGAGATTGCCATACTGCAATGAAATTTATATCAAAGGTCTATCTTCGGCATATTATATTAAGAGATTCTAACTGTTTTCATCATTTCAAAGAAGGGAACTGCTCTTGTGATGATTACTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR

Protein Analysis

822

Amino Acids

92.44

Weight (kDa)

7.28

Isoelectric Point (pI)

38.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 108 - 155 3.6e-08 PPR repeat family
PPR PF01535 111 - 140 7.6e-07 PPR repeat
PPR_2 PF13041 211 - 256 1.6e-08 PPR repeat family
PPR PF01535 213 - 243 1.8e-06 PPR repeat
PPR_2 PF13041 312 - 359 3.1e-11 PPR repeat family
PPR PF01535 314 - 342 2.9e-08 PPR repeat
PPR_2 PF13041 412 - 450 8e-10 PPR repeat family
PPR PF01535 415 - 445 8.7e-09 PPR repeat
PPR_2 PF13041 514 - 561 2.2e-08 PPR repeat family
E_motif PF20431 631 - 693 1e-19 E motif
DYW_deaminase PF14432 729 - 821 1.8e-40 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016644)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61170
fragaria_vesca FvH4_5g34470
malus_domestica MD07G1126900.v1.1
prunus_persica Prupe.2G157100_v2.0.a1
pyrus_communis pycom07g12240
rosa_chinensis RchiOBHm_Chr7g0235091
rosa_multiflora Rmu_sc0002239.1_g000010
rosa_roxburghii Rroxscaffold_3G00226310
rosa_rugosa Rorug07G0287300 Rorug07G0287400
rosa_samantha Rh7AG442400 Rh7BG415000 Rh7CG463300
rosa_wichuraiana Rw7G036780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 875
AccB1I GGYRCC 1 cut(s) 2308
AccB7I CCANNNNNTGG 1 cut(s) 336
AccBSI CCGCTC 1 cut(s) 1915
AccI GTMKAC 1 cut(s) 192
AccII CGCG 1 cut(s) 202
AciI CCGC 5 cut(s) 115, 1018, 1205, 1915, 1991
AclWI GGATC 1 cut(s) 1340
AcoI YGGCCR 3 cut(s) 12, 184, 1402
AcsI RAATTY 7 cut(s) 44, 1397, 1410, 2046, 2203, 2319, 2366
AcuI CTGAAG 2 cut(s) 309, 2130
AcyI GRCGYC 1 cut(s) 1506
AfaI GTAC 6 cut(s) 359, 437, 665, 1275, 1712, 1890
AfeI AGCGCT 1 cut(s) 1363
AfiI CCNNNNNNNGG 1 cut(s) 336
AflII CTTAAG 1 cut(s) 2051
AflIII ACRYGT 4 cut(s) 438, 564, 870, 1980
AjnI CCWGG 3 cut(s) 1750, 2059, 2302
AjuI GAANNNNNNNTTGG 2 cut(s) 1502, 1534
AleI CACNNNNGTG 1 cut(s) 813
AloI GAACNNNNNNTCC 2 cut(s) 804, 836
Alw21I GWGCWC 3 cut(s) 802, 810, 1764
Alw26I GTCTC 5 cut(s) 605, 702, 836, 882, 2072
Alw44I GTGCAC 1 cut(s) 806
AlwI GGATC 1 cut(s) 1340
AlwNI CAGNNNCTG 2 cut(s) 596, 770
Aor51HI AGCGCT 1 cut(s) 1363
AoxI GGCC 6 cut(s) 12, 184, 1402, 1435, 1812, 2245
ApaLI GTGCAC 1 cut(s) 806
ApeKI GCWGC 7 cut(s) 117, 260, 1202, 1877, 1919, 2012, 2067
ApoI RAATTY 7 cut(s) 44, 1397, 1410, 2046, 2203, 2319, 2366
ArsI GACNNNNNNTTYG 2 cut(s) 1088, 1120
AscI GGCGCGCC 1 cut(s) 200
Asp700I GAANNNNTTC 4 cut(s) 44, 701, 1931, 2122
AspLEI GCGC 8 cut(s) 202, 204, 496, 585, 1364, 1637, 1794, 2212
AspS9I GGNCC 1 cut(s) 1251
AsuC2I CCSGG 1 cut(s) 2336
AsuHPI GGTGA 2 cut(s) 689, 2284
AvaII GGWCC 1 cut(s) 1251
BaeGI GKGCMC 2 cut(s) 810, 2311
BalI TGGCCA 1 cut(s) 1404
BanI GGYRCC 1 cut(s) 2308
BanII GRGCYC 1 cut(s) 802
BbsI GAAGAC 3 cut(s) 286, 1509, 1685
Bbv12I GWGCWC 3 cut(s) 802, 810, 1764
BbvI GCAGC 7 cut(s) 129, 247, 1189, 1864, 1931, 1999, 2079
BccI CCATC 6 cut(s) 81, 338, 674, 1063, 1844, 1995
BceAI ACGGC 2 cut(s) 27, 2148
BciT130I CCWGG 3 cut(s) 1752, 2061, 2304
BciVI GTATCC 2 cut(s) 1062, 2180
BclI TGATCA 4 cut(s) 1039, 1260, 1615, 2172
BcnI CCSGG 1 cut(s) 2336
BcoDI GTCTC 5 cut(s) 605, 702, 836, 882, 2072
BfaI CTAG 4 cut(s) 284, 753, 1998, 2249
BfmI CTRYAG 1 cut(s) 1326
BfoI RGCGCY 2 cut(s) 1365, 1795
BfrI CTTAAG 1 cut(s) 2051
BfuI GTATCC 2 cut(s) 1062, 2180
BisI GCNGC 8 cut(s) 118, 261, 1203, 1878, 1920, 1992, 2013, 2068
BlpI GCTNAGC 1 cut(s) 1182
BlsI GCNGC 8 cut(s) 119, 262, 1204, 1879, 1921, 1993, 2014, 2069
Bme1390I CCNGG 4 cut(s) 1752, 2061, 2304, 2336
Bme18I GGWCC 1 cut(s) 1251
BmgT120I GGNCC 1 cut(s) 1251
BmiI GGNNCC 4 cut(s) 1845, 1944, 2058, 2310
BmrFI CCNGG 4 cut(s) 1752, 2061, 2304, 2336
BmrI ACTGGG 2 cut(s) 482, 669
BmsI GCATC 4 cut(s) 298, 1189, 1999, 2054
BmuI ACTGGG 2 cut(s) 482, 669
BpiI GAAGAC 3 cut(s) 286, 1509, 1685
BpmI CTGGAG 1 cut(s) 467
Bpu10I CCTNAGC 2 cut(s) 801, 1795
Bpu1102I GCTNAGC 1 cut(s) 1182
BpuMI CCSGG 1 cut(s) 2336
BsaAI YACGTR 3 cut(s) 1050, 1277, 2191
BsaBI GATNNNNATC 1 cut(s) 2171
BsaHI GRCGYC 1 cut(s) 1506
BsaI GGTCTC 2 cut(s) 836, 882
BsaJI CCNNGG 2 cut(s) 861, 2303
BsaWI WCCGGW 1 cut(s) 1846
BsaXI ACNNNNNCTCC 6 cut(s) 128, 158, 789, 819, 828, 858
Bsc4I CCNNNNNNNGG 1 cut(s) 336
Bse1I ACTGG 7 cut(s) 433, 477, 664, 1135, 1345, 1636, 2465
Bse3DI GCAATG 5 cut(s) 699, 1107, 1482, 1929, 2367
Bse8I GATNNNNATC 1 cut(s) 2171
BseBI CCWGG 3 cut(s) 1752, 2061, 2304
BseDI CCNNGG 2 cut(s) 861, 2303
BseGI GGATG 5 cut(s) 238, 818, 1243, 1855, 2069
BseJI GATNNNNATC 1 cut(s) 2171
BseLI CCNNNNNNNGG 1 cut(s) 336
BseMI GCAATG 5 cut(s) 699, 1107, 1482, 1929, 2367
BseMII CTCAG 6 cut(s) 288, 446, 588, 683, 815, 1809
BseNI ACTGG 7 cut(s) 433, 477, 664, 1135, 1345, 1636, 2465
BsePI GCGCGC 1 cut(s) 200
BseSI GKGCMC 2 cut(s) 810, 2311
BseX3I CGGCCG 1 cut(s) 184
BseXI GCAGC 7 cut(s) 129, 247, 1189, 1864, 1931, 1999, 2079
BseYI CCCAGC 1 cut(s) 428
Bsh1236I CGCG 1 cut(s) 202
Bsh1285I CGRYCG 2 cut(s) 187, 1022
BshFI GGCC 6 cut(s) 14, 186, 1404, 1437, 1814, 2247
BshNI GGYRCC 1 cut(s) 2308
BsiEI CGRYCG 2 cut(s) 187, 1022
BsiHKAI GWGCWC 3 cut(s) 802, 810, 1764
BsiSI CCGG 4 cut(s) 183, 1434, 1847, 2335
BslFI GGGAC 1 cut(s) 1585
BslI CCNNNNNNNGG 1 cut(s) 336
BsmAI GTCTC 5 cut(s) 605, 702, 836, 882, 2072
BsmBI CGTCTC 1 cut(s) 2072
BsmFI GGGAC 1 cut(s) 1585
BsmI GAATGC 1 cut(s) 411
BsnI GGCC 6 cut(s) 14, 186, 1404, 1437, 1814, 2247
Bso31I GGTCTC 2 cut(s) 836, 882
Bsp1286I GDGCHC 4 cut(s) 802, 810, 1764, 2311
Bsp143I GATC 7 cut(s) 3, 1039, 1260, 1332, 1615, 2160, 2172
Bsp1720I GCTNAGC 1 cut(s) 1182
BspACI CCGC 5 cut(s) 115, 1018, 1205, 1915, 1991
BspANI GGCC 6 cut(s) 14, 186, 1404, 1437, 1814, 2247
BspCNI CTCAG 6 cut(s) 287, 447, 589, 682, 814, 1808
BspFNI CGCG 1 cut(s) 202
BspHI TCATGA 3 cut(s) 1288, 2163, 2215
BspLI GGNNCC 4 cut(s) 1845, 1944, 2058, 2310
BspMAI CTGCAG 1 cut(s) 1330
BspPI GGATC 1 cut(s) 1340
BspT107I GGYRCC 1 cut(s) 2308
BspTI CTTAAG 1 cut(s) 2051
BspTNI GGTCTC 2 cut(s) 836, 882
BsrBI CCGCTC 1 cut(s) 1915
BsrDI GCAATG 5 cut(s) 699, 1107, 1482, 1929, 2367
BsrI ACTGG 7 cut(s) 433, 477, 664, 1135, 1345, 1636, 2465
BssECI CCNNGG 2 cut(s) 861, 2303
BssHII GCGCGC 1 cut(s) 200
BssMI GATC 7 cut(s) 3, 1039, 1260, 1332, 1615, 2160, 2172
BssNI GRCGYC 1 cut(s) 1506
BssT1I CCWWGG 1 cut(s) 861
Bst2UI CCWGG 3 cut(s) 1752, 2061, 2304
Bst4CI ACNGT 6 cut(s) 124, 649, 1390, 1858, 2261, 2417
Bst6I CTCTTC 1 cut(s) 1582
BstACI GRCGYC 1 cut(s) 1506
BstAFI CTTAAG 1 cut(s) 2051
BstAPI GCANNNNNTGC 2 cut(s) 1481, 1874
BstBAI YACGTR 3 cut(s) 1050, 1277, 2191
BstC8I GCNNGC 7 cut(s) 202, 581, 717, 1360, 1771, 1875, 1917
BstDEI CTNAG 9 cut(s) 141, 274, 455, 597, 669, 801, 1182, 1301, 1795
BstF5I GGATG 5 cut(s) 238, 818, 1243, 1855, 2069
BstFNI CGCG 1 cut(s) 202
BstH2I RGCGCY 2 cut(s) 1365, 1795
BstHHI GCGC 8 cut(s) 202, 204, 496, 585, 1364, 1637, 1794, 2212
BstKTI GATC 7 cut(s) 6, 1042, 1263, 1335, 1618, 2163, 2175
BstMAI GTCTC 5 cut(s) 605, 702, 836, 882, 2072
BstMBI GATC 7 cut(s) 3, 1039, 1260, 1332, 1615, 2160, 2172
BstMCI CGRYCG 2 cut(s) 187, 1022
BstMWI GCNNNNNNNGC 6 cut(s) 266, 908, 992, 1370, 1481, 1874
BstNI CCWGG 3 cut(s) 1752, 2061, 2304
BstNSI RCATGY 4 cut(s) 568, 715, 874, 1984
BstSCI CCNGG 4 cut(s) 1750, 2059, 2302, 2334
BstSFI CTRYAG 1 cut(s) 1326
BstSLI GKGCMC 2 cut(s) 810, 2311
BstSNI TACGTA 2 cut(s) 1050, 1277
BstUI CGCG 1 cut(s) 202
BstV1I GCAGC 7 cut(s) 129, 247, 1189, 1864, 1931, 1999, 2079
BstV2I GAAGAC 3 cut(s) 286, 1509, 1685
BstX2I RGATCY 1 cut(s) 1332
BstXI CCANNNNNNTGG 1 cut(s) 961
BstYI RGATCY 1 cut(s) 1332
BstZI CGGCCG 1 cut(s) 184
BsuI GTATCC 2 cut(s) 1062, 2180
BsuRI GGCC 6 cut(s) 14, 186, 1404, 1437, 1814, 2247
BtsCI GGATG 5 cut(s) 238, 818, 1243, 1855, 2069
BtsI GCAGTG 2 cut(s) 454, 1868
BtsIMutI CAGTG 5 cut(s) 120, 454, 470, 1868, 2266
Cac8I GCNNGC 7 cut(s) 202, 581, 717, 1360, 1771, 1875, 1917
CaiI CAGNNNCTG 2 cut(s) 596, 770
CciI TCATGA 3 cut(s) 1288, 2163, 2215
CfoI GCGC 8 cut(s) 202, 204, 496, 585, 1364, 1637, 1794, 2212
Cfr13I GGNCC 1 cut(s) 1251
CseI GACGC 2 cut(s) 762, 1514
CsiI ACCWGGT 1 cut(s) 1750
Csp6I GTAC 6 cut(s) 358, 436, 664, 1274, 1711, 1889
CviQI GTAC 6 cut(s) 358, 436, 664, 1274, 1711, 1889
DdeI CTNAG 9 cut(s) 141, 274, 455, 597, 669, 801, 1182, 1301, 1795
DpnI GATC 7 cut(s) 5, 1041, 1262, 1334, 1617, 2162, 2174
DpnII GATC 7 cut(s) 3, 1039, 1260, 1332, 1615, 2160, 2172
DraI TTTAAA 1 cut(s) 1009
DrdI GACNNNNNNGTC 1 cut(s) 875
DseDI GACNNNNNNGTC 1 cut(s) 875
EaeI YGGCCR 3 cut(s) 12, 184, 1402
EagI CGGCCG 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 1582
EarI CTCTTC 1 cut(s) 1582
Ecl136II GAGCTC 1 cut(s) 800
EclXI CGGCCG 1 cut(s) 184
Eco105I TACGTA 2 cut(s) 1050, 1277
Eco130I CCWWGG 1 cut(s) 861
Eco24I GRGCYC 1 cut(s) 802
Eco31I GGTCTC 2 cut(s) 836, 882
Eco32I GATATC 1 cut(s) 351
Eco47I GGWCC 1 cut(s) 1251
Eco47III AGCGCT 1 cut(s) 1363
Eco52I CGGCCG 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 800
Eco57I CTGAAG 2 cut(s) 309, 2130
EcoICRI GAGCTC 1 cut(s) 800
EcoRI GAATTC 1 cut(s) 2046
EcoRII CCWGG 3 cut(s) 1750, 2059, 2302
EcoRV GATATC 1 cut(s) 351
EcoT14I CCWWGG 1 cut(s) 861
EcoT38I GRGCYC 1 cut(s) 802
ErhI CCWWGG 1 cut(s) 861
Esp3I CGTCTC 1 cut(s) 2072
FalI AAGNNNNNCTT 2 cut(s) 370, 402
FaqI GGGAC 1 cut(s) 1585
FauI CCCGC 1 cut(s) 1908
FbaI TGATCA 4 cut(s) 1039, 1260, 1615, 2172
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 8 cut(s) 118, 261, 1203, 1878, 1920, 1992, 2013, 2068
FokI GGATG 5 cut(s) 245, 825, 1250, 1862, 2076
FriOI GRGCYC 1 cut(s) 802
Fsp4HI GCNGC 8 cut(s) 118, 261, 1203, 1878, 1920, 1992, 2013, 2068
FspBI CTAG 4 cut(s) 284, 753, 1998, 2249
GlaI GCGC 8 cut(s) 201, 203, 495, 584, 1363, 1636, 1793, 2211
GluI GCNGC 8 cut(s) 118, 261, 1203, 1878, 1920, 1992, 2013, 2068
GsaI CCCAGC 1 cut(s) 432
GsuI CTGGAG 1 cut(s) 467
HaeII RGCGCY 2 cut(s) 1365, 1795
HaeIII GGCC 6 cut(s) 14, 186, 1404, 1437, 1814, 2247
HapII CCGG 4 cut(s) 183, 1434, 1847, 2335
HgaI GACGC 2 cut(s) 762, 1514
HhaI GCGC 8 cut(s) 202, 204, 496, 585, 1364, 1637, 1794, 2212
Hin1I GRCGYC 1 cut(s) 1506
Hin6I GCGC 8 cut(s) 200, 202, 494, 583, 1362, 1635, 1792, 2210
HinP1I GCGC 8 cut(s) 200, 202, 494, 583, 1362, 1635, 1792, 2210
HincII GTYRAC 3 cut(s) 193, 868, 931
HindII GTYRAC 3 cut(s) 193, 868, 931
HindIII AAGCTT 3 cut(s) 384, 993, 1802
HpaII CCGG 4 cut(s) 183, 1434, 1847, 2335
HphI GGTGA 2 cut(s) 689, 2284
Hpy166II GTNNAC 9 cut(s) 193, 438, 562, 645, 744, 808, 868, 931, 1891
Hpy8I GTNNAC 9 cut(s) 193, 438, 562, 645, 744, 808, 868, 931, 1891
Hpy99I CGWCG 2 cut(s) 197, 778
HpyAV CCTTC 6 cut(s) 716, 901, 1078, 1448, 1858, 2429
HpyCH4III ACNGT 6 cut(s) 124, 649, 1390, 1858, 2261, 2417
HpyCH4IV ACGT 7 cut(s) 440, 636, 746, 1049, 1140, 1276, 2190
HpyF10VI GCNNNNNNNGC 6 cut(s) 266, 908, 992, 1370, 1481, 1874
HpyF3I CTNAG 9 cut(s) 141, 274, 455, 597, 669, 801, 1182, 1301, 1795
HpySE526I ACGT 7 cut(s) 440, 636, 746, 1049, 1140, 1276, 2190
Hsp92I GRCGYC 1 cut(s) 1506
HspAI GCGC 8 cut(s) 200, 202, 494, 583, 1362, 1635, 1792, 2210
Ksp22I TGATCA 4 cut(s) 1039, 1260, 1615, 2172
Kzo9I GATC 7 cut(s) 3, 1039, 1260, 1332, 1615, 2160, 2172
LmnI GCTCC 5 cut(s) 486, 797, 836, 1759, 2056
Lsp1109I GCAGC 7 cut(s) 129, 247, 1189, 1864, 1931, 1999, 2079
LweI GCATC 4 cut(s) 298, 1189, 1999, 2054
MabI ACCWGGT 1 cut(s) 1750
MaeI CTAG 4 cut(s) 284, 753, 1998, 2249
MaeII ACGT 7 cut(s) 440, 636, 746, 1049, 1140, 1276, 2190
MaeIII GTNAC 1 cut(s) 547
MalI GATC 7 cut(s) 5, 1041, 1262, 1334, 1617, 2162, 2174
MbiI CCGCTC 1 cut(s) 1915
MboI GATC 7 cut(s) 3, 1039, 1260, 1332, 1615, 2160, 2172
MflI RGATCY 1 cut(s) 1332
MhlI GDGCHC 4 cut(s) 802, 810, 1764, 2311
MlsI TGGCCA 1 cut(s) 1404
MluNI TGGCCA 1 cut(s) 1404
MlyI GAGTC 5 cut(s) 146, 198, 607, 1517, 1607
Mox20I TGGCCA 1 cut(s) 1404
MroXI GAANNNNTTC 4 cut(s) 44, 701, 1931, 2122
MscI TGGCCA 1 cut(s) 1404
MslI CAYNNNNRTG 2 cut(s) 813, 959
Msp20I TGGCCA 1 cut(s) 1404
MspA1I CMGCKG 1 cut(s) 2070
MspCI CTTAAG 1 cut(s) 2051
MspI CCGG 4 cut(s) 183, 1434, 1847, 2335
MspR9I CCNGG 4 cut(s) 1752, 2061, 2304, 2336
Mva1269I GAATGC 1 cut(s) 411
MvaI CCWGG 3 cut(s) 1752, 2061, 2304
MvnI CGCG 1 cut(s) 202
MwoI GCNNNNNNNGC 6 cut(s) 266, 908, 992, 1370, 1481, 1874
NciI CCSGG 1 cut(s) 2336
NdeII GATC 7 cut(s) 3, 1039, 1260, 1332, 1615, 2160, 2172
NlaIV GGNNCC 4 cut(s) 1845, 1944, 2058, 2310
NmeAIII GCCGAG 2 cut(s) 212, 249
NmuCI GTSAC 1 cut(s) 547
NspI RCATGY 4 cut(s) 568, 715, 874, 1984
OliI CACNNNNGTG 1 cut(s) 813
PagI TCATGA 3 cut(s) 1288, 2163, 2215
PalAI GGCGCGCC 1 cut(s) 200
PauI GCGCGC 1 cut(s) 200
PciI ACATGT 3 cut(s) 564, 870, 1980
PctI GAATGC 1 cut(s) 411
PdmI GAANNNNTTC 4 cut(s) 44, 701, 1931, 2122
PfeI GAWTC 6 cut(s) 84, 128, 731, 2019, 2329, 2408
PflMI CCANNNNNTGG 1 cut(s) 336
PkrI GCNGC 8 cut(s) 119, 262, 1204, 1879, 1921, 1993, 2014, 2069
PleI GAGTC 5 cut(s) 145, 197, 607, 1517, 1606
PpsI GAGTC 5 cut(s) 145, 197, 607, 1517, 1606
Ppu21I YACGTR 3 cut(s) 1050, 1277, 2191
PscI ACATGT 3 cut(s) 564, 870, 1980
Psp124BI GAGCTC 1 cut(s) 802
Psp6I CCWGG 3 cut(s) 1750, 2059, 2302
PspFI CCCAGC 1 cut(s) 428
PspGI CCWGG 3 cut(s) 1750, 2059, 2302
PspN4I GGNNCC 4 cut(s) 1845, 1944, 2058, 2310
PspPI GGNCC 1 cut(s) 1251
PstI CTGCAG 1 cut(s) 1330
PstNI CAGNNNCTG 2 cut(s) 596, 770
PsuI RGATCY 1 cut(s) 1332
PteI GCGCGC 1 cut(s) 200
PvuII CAGCTG 1 cut(s) 2070
RsaI GTAC 6 cut(s) 359, 437, 665, 1275, 1712, 1890
RsaNI GTAC 6 cut(s) 358, 436, 664, 1274, 1711, 1889
RseI CAYNNNNRTG 2 cut(s) 813, 959
SacI GAGCTC 1 cut(s) 802
SalI GTCGAC 1 cut(s) 191
SatI GCNGC 8 cut(s) 118, 261, 1203, 1878, 1920, 1992, 2013, 2068
Sau3AI GATC 7 cut(s) 3, 1039, 1260, 1332, 1615, 2160, 2172
Sau96I GGNCC 1 cut(s) 1251
SchI GAGTC 5 cut(s) 146, 198, 607, 1517, 1607
ScrFI CCNGG 4 cut(s) 1752, 2061, 2304, 2336
SduI GDGCHC 4 cut(s) 802, 810, 1764, 2311
SexAI ACCWGGT 1 cut(s) 1750
SfaNI GCATC 4 cut(s) 298, 1189, 1999, 2054
SfcI CTRYAG 1 cut(s) 1326
SgsI GGCGCGCC 1 cut(s) 200
SinI GGWCC 1 cut(s) 1251
SmiMI CAYNNNNRTG 2 cut(s) 813, 959
SmlI CTYRAG 1 cut(s) 2051
SmoI CTYRAG 1 cut(s) 2051
SnaBI TACGTA 2 cut(s) 1050, 1277
SsiI CCGC 5 cut(s) 115, 1018, 1205, 1915, 1991
SspI AATATT 2 cut(s) 538, 1671
SspMI CTAG 4 cut(s) 284, 753, 1998, 2249
SstI GAGCTC 1 cut(s) 802
StyD4I CCNGG 4 cut(s) 1750, 2059, 2302, 2334
StyI CCWWGG 1 cut(s) 861
TaaI ACNGT 6 cut(s) 124, 649, 1390, 1858, 2261, 2417
TaiI ACGT 7 cut(s) 443, 639, 749, 1052, 1143, 1279, 2193
TaqI TCGA 7 cut(s) 192, 213, 390, 414, 1022, 1521, 2126
TaqII GACCGA 1 cut(s) 766
TatI WGTACW 2 cut(s) 435, 1888
TauI GCSGC 1 cut(s) 1994
TfiI GAWTC 6 cut(s) 84, 128, 731, 2019, 2329, 2408
TscAI CASTG 5 cut(s) 127, 454, 477, 1875, 2266
TseFI GTSAC 1 cut(s) 547
TseI GCWGC 7 cut(s) 117, 260, 1202, 1877, 1919, 2012, 2067
Tsp45I GTSAC 1 cut(s) 547
TspGWI ACGGA 2 cut(s) 149, 825
TspRI CASTG 5 cut(s) 127, 454, 477, 1875, 2266
Van91I CCANNNNNTGG 1 cut(s) 336
Vha464I CTTAAG 1 cut(s) 2051
VneI GTGCAC 1 cut(s) 806
VpaK11BI GGWCC 1 cut(s) 1251
XapI RAATTY 7 cut(s) 44, 1397, 1410, 2046, 2203, 2319, 2366
XbaI TCTAGA 1 cut(s) 1997
XceI RCATGY 4 cut(s) 568, 715, 874, 1984
XmiI GTMKAC 1 cut(s) 192
XmnI GAANNNNTTC 4 cut(s) 44, 701, 1931, 2122
XspI CTAG 4 cut(s) 284, 753, 1998, 2249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.