pycom07g12240

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0016644
Physical Location & Seq
Forward (+)
13510238 .. 13513595
3358 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g12240.2

Sequence Viewer

Length: 2616 bp
ATGATCTACACGGCCATTGAAAAGCGAAGGCTGGTTATGAACAAATTCAATTCAATTTTTATCAATTATTCCCATCAATCCAGATTCAATCACAGAGGACTGACCCGTTTCCTCCGCAGCACTGTGGATTCAACGGAGTCTAAGTTTCACTCCAATTTACTTCTCAATGAGCTGTCTAAATCCGGCCGAGTCGATGAGGCCCGCCAGATGTTCGATAAAATGCCGAGCAGGGATGAGTTTTCTTGGAACACTATGATAGCTGCTTATGCCAACTCAGGAAGACTCGCTGAAGCAAAACAACTCTTTGATGCGACCCCAAGTAAAAACTCCATCACATGGTCATCATTGATATCTGGGTACTGCCGAAATGAGAGCGAAAGTGAAGCTTTCGAGTTGTTTTGGCGAATGCAGTTCGAGGGGCACAAGCCCAGCCAGTACACGTTGGGCAGTGTTCTGAGGTTGTGTTCAACATTGGGTTTGCTCCAGAGAGGTGCGCTTGTTCATGGTTATATGACAAAGACCCAATTTGACAATAATATTTTCGTTGTCACGGGTTTGGTGGACATGTATGCAAAGTGCAAGCGCATATCAGAAGCTGAGTATCTCTTTGTGACTCTGCCTGATAGGAAAAACCACGTTTTGTGGACTGTCATGCTTACTGGGTACTCTCAGAATGGTGATGGGTTTAAGGCAATGAAGTTTTTCCGAGACATGCGAGCAGAAGGGGTTGAATCCAATCATTTTACGTTCCCTAGTGTATTGACAGCTTCTGCATCAGTCTTAGCACATAGTTTCGGTGCTCAGGTGCACGGATGTGTTGTTCAGAGTGGTCTCGGGGCTAATGTGTTTGTCCAAAGTTCCTTGGTTGACATGTATGTCAAATGTGGAGACCTTAATAGTGCAAAGAAGGCATTGAGAAGCATGGAGGTTGACGATGTTGTTTCTTGGAACTCCATGATTGTGGGTTGTGTAAGGCAGGGATTCGCAGAAGAAGCTTTGTCCTTGTTTAAAGATATGCGTTCGAGAGAAATGAAGATTGATCATTTTACGTATCCATCTGTTCTAAACTCCTTTGCTGCGATGAAGGACATGAAAAATGCAATGTCTATCCATTGTTTGATAATCAAGACTGGTTTTGACGTTTATCAACTTGTGGGAAATGCTCTCGTTGATATGTATGCTAAGCAGGGGAACATAGATGCTGCGGTTGAGGTGTTTAAGTGTATGTCAAACAAGGATGTTATCTCATGGACCTCCCTGATCACAGGCTATGTACATAATGGCTCTCATGAAAAAGCACTTAGATTGTTCTGTGAGATGAGAACTGCAGGGATCTATCCCGACCAGTTTGTAATTGCCAGCGCTTTGAGTGCCTGTGCCGAACTGACAGTTCTGGAATTTGGCCAACAAATTCATGCAAACTTTATTAAGTCCGGCCTTCAAGCCTCCTTATCAGTAGATAATTCCTTTGTAGCAATGTATGCAAAATGCGGGTGCATAGAAGACGCCAATAGAGTTTTCGACTCTATGCAAGTTCAAGATGTGATTACTTGGACAGCTTTGATAGTTGGTTATGCCCAGAATGGTAGAGGAAAGGAGTCCCTAAAGTTTTATGATCAAATGATTTTAGCTGGCGCAGAACCGGACTTCATTACCTTTATCGGCTTAATATTTGCTTGTAGCCATGCTGGTCTTCTGGAAAAAGGTCAGTACTACTTTGAATCGATGAGTAGGGTTTATGGAATACAACCAGGTCCAGAGCACTATGCATGCATGATTGACCTCTTGGGGCGCTCAGGGAAGCTTAATGAGGCCGAAGCATTAGTTAATAAAATGGCTGTGGAACCAGATGGAACTGTATGGAAGGCACTGCTTGCTGCATGTAGAGTACACGGGAACATAGAACTTGGAGAGCGGGCAGCAACAAACCTTTTCAAATTGGAACCTCTAAATGCTGTGCCTTATGTTCAGTTATCTAACATGTATTCTGCGGCTTCTAGATGGGAAGATGCTGCAAGAATCCGAAGATTGATGAAATCAAAGGGAATTCTTAAGGAGCCTGGATGCAGCTGGATTGAGACGAACAGCCAAATGCATACCTTTATGTCTGAAGATAGAAGCCATTCGAGGACGGCTGAAATATATTCAAAGGTTGATGAGATCATGATGTTGATCAAGGAAGCTGGATACGTGCCAGATATGAATTTTGCGCTTCATGACATGGATAAAGAGGGTAAAGAGCTTGGCCTAGCGTATCACAGTGAGAAGTTGGCTGTTGCTTTTGGGCTTCTCACCACACCACCAGGGGCACCAATCCGAATTTTTAAGAATCTCCGGGTTTGTGGAGATTGCCATACTGCAATGAAATTTATATCAAAGGTCTATCTTCGGCATATTATATTAAGAGATTCAAACTGTTTTCATCATTTCAAAGAAGGGAACTGCTCTTGTGATGATTACTGTCAAGGTATACGACATACATCGCGAAAATTTGGTCTTGGAAACTTAGCCGAAGCAATCCCCACAAACACCCACCTGAAAATTCCACCCGCAAAATCTATTCGATCGAATAGCCTGCCACTTCATCTCCGGTGCGTACTTTCATTACTGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR

Protein Analysis

872

Amino Acids

97.67

Weight (kDa)

8.28

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016644)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61170
fragaria_vesca FvH4_5g34470
malus_domestica MD07G1126900.v1.1
prunus_persica Prupe.2G157100_v2.0.a1
pyrus_communis pycom07g12240
rosa_chinensis RchiOBHm_Chr7g0235091
rosa_multiflora Rmu_sc0002239.1_g000010
rosa_roxburghii Rroxscaffold_3G00226310
rosa_rugosa Rorug07G0287300 Rorug07G0287400
rosa_samantha Rh7AG442400 Rh7BG415000 Rh7CG463300
rosa_wichuraiana Rw7G036780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 875
AccB1I GGYRCC 1 cut(s) 2308
AccB7I CCANNNNNTGG 1 cut(s) 336
AccBSI CCGCTC 1 cut(s) 1915
AccI GTMKAC 1 cut(s) 2470
AccII CGCG 1 cut(s) 2485
AciI CCGC 7 cut(s) 115, 202, 1205, 1491, 1915, 1991, 2550
AclWI GGATC 1 cut(s) 1340
AcoI YGGCCR 3 cut(s) 12, 184, 1402
AcsI RAATTY 9 cut(s) 44, 1397, 1410, 2046, 2203, 2319, 2366, 2489, 2541
AcuI CTGAAG 2 cut(s) 309, 2130
AcyI GRCGYC 1 cut(s) 1506
AfaI GTAC 7 cut(s) 359, 437, 665, 1275, 1712, 1890, 2598
AfeI AGCGCT 1 cut(s) 1363
AfiI CCNNNNNNNGG 1 cut(s) 336
AflII CTTAAG 1 cut(s) 2051
AflIII ACRYGT 4 cut(s) 438, 564, 870, 1980
AjnI CCWGG 3 cut(s) 1750, 2059, 2302
AjuI GAANNNNNNNTTGG 2 cut(s) 1502, 1534
AleI CACNNNNGTG 1 cut(s) 813
AloI GAACNNNNNNTCC 2 cut(s) 804, 836
Alw21I GWGCWC 3 cut(s) 802, 810, 1764
Alw26I GTCTC 4 cut(s) 702, 836, 882, 2072
Alw44I GTGCAC 1 cut(s) 806
AlwI GGATC 1 cut(s) 1340
AlwNI CAGNNNCTG 2 cut(s) 596, 770
Ama87I CYCGRG 1 cut(s) 833
Aor51HI AGCGCT 1 cut(s) 1363
AoxI GGCC 7 cut(s) 12, 184, 198, 1402, 1435, 1812, 2245
ApaLI GTGCAC 1 cut(s) 806
ApeKI GCWGC 8 cut(s) 117, 260, 1076, 1202, 1877, 1919, 2012, 2067
ApoI RAATTY 9 cut(s) 44, 1397, 1410, 2046, 2203, 2319, 2366, 2489, 2541
ArsI GACNNNNNNTTYG 2 cut(s) 2479, 2511
Asp700I GAANNNNTTC 3 cut(s) 44, 701, 2122
AspLEI GCGC 6 cut(s) 496, 585, 1364, 1637, 1794, 2212
AspS9I GGNCC 3 cut(s) 199, 1251, 1754
AsuC2I CCSGG 1 cut(s) 2336
AsuHPI GGTGA 2 cut(s) 689, 2284
AvaI CYCGRG 1 cut(s) 833
AvaII GGWCC 2 cut(s) 1251, 1754
BaeGI GKGCMC 3 cut(s) 423, 810, 2311
BalI TGGCCA 1 cut(s) 1404
BanI GGYRCC 1 cut(s) 2308
BbsI GAAGAC 3 cut(s) 286, 1509, 1685
Bbv12I GWGCWC 3 cut(s) 802, 810, 1764
BbvI GCAGC 8 cut(s) 129, 247, 1063, 1189, 1864, 1931, 1999, 2079
BccI CCATC 6 cut(s) 81, 338, 674, 1063, 1844, 1995
BceAI ACGGC 2 cut(s) 27, 2148
BcgI CGANNNNNNTGC 2 cut(s) 2557, 2591
BciT130I CCWGG 3 cut(s) 1752, 2061, 2304
BciVI GTATCC 2 cut(s) 1062, 2180
BclI TGATCA 4 cut(s) 1039, 1260, 1615, 2172
BcnI CCSGG 1 cut(s) 2336
BcoDI GTCTC 4 cut(s) 702, 836, 882, 2072
BfaI CTAG 3 cut(s) 753, 1998, 2249
BfmI CTRYAG 1 cut(s) 1326
BfoI RGCGCY 2 cut(s) 1365, 1795
BfrI CTTAAG 1 cut(s) 2051
BfuI GTATCC 2 cut(s) 1062, 2180
BisI GCNGC 9 cut(s) 118, 261, 1077, 1203, 1878, 1920, 1992, 2013, 2068
BlpI GCTNAGC 1 cut(s) 1182
BlsI GCNGC 9 cut(s) 119, 262, 1078, 1204, 1879, 1921, 1993, 2014, 2069
BmcAI AGTACT 1 cut(s) 1712
Bme1390I CCNGG 4 cut(s) 1752, 2061, 2304, 2336
Bme18I GGWCC 2 cut(s) 1251, 1754
BmeT110I CYCGRG 1 cut(s) 833
BmgT120I GGNCC 3 cut(s) 199, 1251, 1754
BmiI GGNNCC 4 cut(s) 1845, 1944, 2058, 2310
BmrFI CCNGG 4 cut(s) 1752, 2061, 2304, 2336
BmrI ACTGGG 1 cut(s) 669
BmsI GCATC 5 cut(s) 298, 782, 1189, 1999, 2054
BmuI ACTGGG 1 cut(s) 669
BpiI GAAGAC 3 cut(s) 286, 1509, 1685
BpmI CTGGAG 1 cut(s) 467
Bpu10I CCTNAGC 2 cut(s) 801, 1795
Bpu1102I GCTNAGC 1 cut(s) 1182
BpuMI CCSGG 1 cut(s) 2336
Bsa29I ATCGAT 1 cut(s) 1724
BsaAI YACGTR 2 cut(s) 1050, 2191
BsaBI GATNNNNATC 1 cut(s) 2171
BsaHI GRCGYC 1 cut(s) 1506
BsaI GGTCTC 2 cut(s) 836, 882
BsaJI CCNNGG 2 cut(s) 861, 2303
BsaWI WCCGGW 2 cut(s) 1642, 2589
BsaXI ACNNNNNCTCC 4 cut(s) 128, 158, 2571, 2601
Bsc4I CCNNNNNNNGG 1 cut(s) 336
Bse1I ACTGG 4 cut(s) 433, 664, 1135, 1345
Bse3DI GCAATG 4 cut(s) 699, 1107, 1482, 2367
Bse8I GATNNNNATC 1 cut(s) 2171
BseBI CCWGG 3 cut(s) 1752, 2061, 2304
BseCI ATCGAT 1 cut(s) 1724
BseDI CCNNGG 2 cut(s) 861, 2303
BseGI GGATG 4 cut(s) 238, 818, 1243, 2069
BseJI GATNNNNATC 1 cut(s) 2171
BseLI CCNNNNNNNGG 1 cut(s) 336
BseMI GCAATG 4 cut(s) 699, 1107, 1482, 2367
BseMII CTCAG 6 cut(s) 288, 446, 588, 683, 815, 1809
BseNI ACTGG 4 cut(s) 433, 664, 1135, 1345
BseSI GKGCMC 3 cut(s) 423, 810, 2311
BseX3I CGGCCG 1 cut(s) 184
BseXI GCAGC 8 cut(s) 129, 247, 1063, 1189, 1864, 1931, 1999, 2079
BseYI CCCAGC 1 cut(s) 428
Bsh1236I CGCG 1 cut(s) 2485
Bsh1285I CGRYCG 2 cut(s) 187, 2567
BshFI GGCC 7 cut(s) 14, 186, 200, 1404, 1437, 1814, 2247
BshNI GGYRCC 1 cut(s) 2308
BshVI ATCGAT 1 cut(s) 1724
BsiEI CGRYCG 2 cut(s) 187, 2567
BsiHKAI GWGCWC 3 cut(s) 802, 810, 1764
BsiHKCI CYCGRG 1 cut(s) 833
BsiSI CCGG 5 cut(s) 183, 1434, 1643, 2335, 2590
BslFI GGGAC 1 cut(s) 1585
BslI CCNNNNNNNGG 1 cut(s) 336
BsmAI GTCTC 4 cut(s) 702, 836, 882, 2072
BsmBI CGTCTC 1 cut(s) 2072
BsmFI GGGAC 1 cut(s) 1585
BsmI GAATGC 1 cut(s) 411
BsnI GGCC 7 cut(s) 14, 186, 200, 1404, 1437, 1814, 2247
Bso31I GGTCTC 2 cut(s) 836, 882
BsoBI CYCGRG 1 cut(s) 833
Bsp1286I GDGCHC 5 cut(s) 423, 802, 810, 1764, 2311
Bsp1407I TGTACA 1 cut(s) 1273
Bsp143I GATC 8 cut(s) 3, 1039, 1260, 1332, 1615, 2160, 2172, 2564
Bsp1720I GCTNAGC 1 cut(s) 1182
Bsp68I TCGCGA 1 cut(s) 2485
BspACI CCGC 7 cut(s) 115, 202, 1205, 1491, 1915, 1991, 2550
BspANI GGCC 7 cut(s) 14, 186, 200, 1404, 1437, 1814, 2247
BspCNI CTCAG 6 cut(s) 287, 447, 589, 682, 814, 1808
BspDI ATCGAT 1 cut(s) 1724
BspFNI CGCG 1 cut(s) 2485
BspHI TCATGA 3 cut(s) 1288, 2163, 2215
BspLI GGNNCC 4 cut(s) 1845, 1944, 2058, 2310
BspMAI CTGCAG 1 cut(s) 1330
BspPI GGATC 1 cut(s) 1340
BspT107I GGYRCC 1 cut(s) 2308
BspTI CTTAAG 1 cut(s) 2051
BspTNI GGTCTC 2 cut(s) 836, 882
BsrBI CCGCTC 1 cut(s) 1915
BsrDI GCAATG 4 cut(s) 699, 1107, 1482, 2367
BsrGI TGTACA 1 cut(s) 1273
BsrI ACTGG 4 cut(s) 433, 664, 1135, 1345
BssECI CCNNGG 2 cut(s) 861, 2303
BssMI GATC 8 cut(s) 3, 1039, 1260, 1332, 1615, 2160, 2172, 2564
BssNAI GTATAC 1 cut(s) 2471
BssNI GRCGYC 1 cut(s) 1506
BssT1I CCWWGG 1 cut(s) 861
Bst1107I GTATAC 1 cut(s) 2471
Bst2UI CCWGG 3 cut(s) 1752, 2061, 2304
Bst4CI ACNGT 7 cut(s) 124, 649, 1390, 1858, 2261, 2417, 2462
BstACI GRCGYC 1 cut(s) 1506
BstAFI CTTAAG 1 cut(s) 2051
BstAPI GCANNNNNTGC 2 cut(s) 1481, 1874
BstAUI TGTACA 1 cut(s) 1273
BstBAI YACGTR 2 cut(s) 1050, 2191
BstC8I GCNNGC 9 cut(s) 202, 581, 717, 1360, 1633, 1771, 1875, 1917, 2576
BstF5I GGATG 4 cut(s) 238, 818, 1243, 2069
BstFNI CGCG 1 cut(s) 2485
BstH2I RGCGCY 2 cut(s) 1365, 1795
BstHHI GCGC 6 cut(s) 496, 585, 1364, 1637, 1794, 2212
BstKTI GATC 8 cut(s) 6, 1042, 1263, 1335, 1618, 2163, 2175, 2567
BstMAI GTCTC 4 cut(s) 702, 836, 882, 2072
BstMBI GATC 8 cut(s) 3, 1039, 1260, 1332, 1615, 2160, 2172, 2564
BstMCI CGRYCG 2 cut(s) 187, 2567
BstMWI GCNNNNNNNGC 6 cut(s) 266, 908, 992, 1370, 1481, 1874
BstNI CCWGG 3 cut(s) 1752, 2061, 2304
BstNSI RCATGY 6 cut(s) 568, 715, 874, 1773, 1884, 1984
BstSCI CCNGG 4 cut(s) 1750, 2059, 2302, 2334
BstSFI CTRYAG 1 cut(s) 1326
BstSLI GKGCMC 3 cut(s) 423, 810, 2311
BstSNI TACGTA 1 cut(s) 1050
BstUI CGCG 1 cut(s) 2485
BstV1I GCAGC 8 cut(s) 129, 247, 1063, 1189, 1864, 1931, 1999, 2079
BstV2I GAAGAC 3 cut(s) 286, 1509, 1685
BstX2I RGATCY 1 cut(s) 1332
BstXI CCANNNNNNTGG 1 cut(s) 961
BstYI RGATCY 1 cut(s) 1332
BstZ17I GTATAC 1 cut(s) 2471
BstZI CGGCCG 1 cut(s) 184
Bsu15I ATCGAT 1 cut(s) 1724
BsuI GTATCC 2 cut(s) 1062, 2180
BsuRI GGCC 7 cut(s) 14, 186, 200, 1404, 1437, 1814, 2247
BsuTUI ATCGAT 1 cut(s) 1724
BtgZI GCGATG 2 cut(s) 1094, 2466
BtsCI GGATG 4 cut(s) 238, 818, 1243, 2069
BtsI GCAGTG 2 cut(s) 454, 1868
BtsIMutI CAGTG 4 cut(s) 120, 454, 1868, 2266
BtuMI TCGCGA 1 cut(s) 2485
Cac8I GCNNGC 9 cut(s) 202, 581, 717, 1360, 1633, 1771, 1875, 1917, 2576
CaiI CAGNNNCTG 2 cut(s) 596, 770
CciI TCATGA 3 cut(s) 1288, 2163, 2215
CfoI GCGC 6 cut(s) 496, 585, 1364, 1637, 1794, 2212
Cfr13I GGNCC 3 cut(s) 199, 1251, 1754
ClaI ATCGAT 1 cut(s) 1724
CseI GACGC 1 cut(s) 1514
CsiI ACCWGGT 1 cut(s) 1750
Csp6I GTAC 7 cut(s) 358, 436, 664, 1274, 1711, 1889, 2597
CviQI GTAC 7 cut(s) 358, 436, 664, 1274, 1711, 1889, 2597
DpnI GATC 8 cut(s) 5, 1041, 1262, 1334, 1617, 2162, 2174, 2566
DpnII GATC 8 cut(s) 3, 1039, 1260, 1332, 1615, 2160, 2172, 2564
DraI TTTAAA 1 cut(s) 1009
DrdI GACNNNNNNGTC 1 cut(s) 875
DseDI GACNNNNNNGTC 1 cut(s) 875
EaeI YGGCCR 3 cut(s) 12, 184, 1402
EagI CGGCCG 1 cut(s) 184
EclXI CGGCCG 1 cut(s) 184
Eco105I TACGTA 1 cut(s) 1050
Eco130I CCWWGG 1 cut(s) 861
Eco31I GGTCTC 2 cut(s) 836, 882
Eco32I GATATC 1 cut(s) 351
Eco47I GGWCC 2 cut(s) 1251, 1754
Eco47III AGCGCT 1 cut(s) 1363
Eco52I CGGCCG 1 cut(s) 184
Eco57I CTGAAG 2 cut(s) 309, 2130
Eco88I CYCGRG 1 cut(s) 833
EcoRI GAATTC 1 cut(s) 2046
EcoRII CCWGG 3 cut(s) 1750, 2059, 2302
EcoRV GATATC 1 cut(s) 351
EcoT14I CCWWGG 1 cut(s) 861
EcoT22I ATGCAT 3 cut(s) 1771, 1775, 2097
ErhI CCWWGG 1 cut(s) 861
Esp3I CGTCTC 1 cut(s) 2072
FalI AAGNNNNNCTT 2 cut(s) 370, 402
FaqI GGGAC 1 cut(s) 1585
FauI CCCGC 4 cut(s) 209, 1484, 1908, 2557
FbaI TGATCA 4 cut(s) 1039, 1260, 1615, 2172
FblI GTMKAC 1 cut(s) 2470
Fnu4HI GCNGC 9 cut(s) 118, 261, 1077, 1203, 1878, 1920, 1992, 2013, 2068
FokI GGATG 4 cut(s) 245, 825, 1250, 2076
Fsp4HI GCNGC 9 cut(s) 118, 261, 1077, 1203, 1878, 1920, 1992, 2013, 2068
FspBI CTAG 3 cut(s) 753, 1998, 2249
GlaI GCGC 6 cut(s) 495, 584, 1363, 1636, 1793, 2211
GluI GCNGC 9 cut(s) 118, 261, 1077, 1203, 1878, 1920, 1992, 2013, 2068
GsaI CCCAGC 1 cut(s) 432
GsuI CTGGAG 1 cut(s) 467
HaeII RGCGCY 2 cut(s) 1365, 1795
HaeIII GGCC 7 cut(s) 14, 186, 200, 1404, 1437, 1814, 2247
HapII CCGG 5 cut(s) 183, 1434, 1643, 2335, 2590
HgaI GACGC 1 cut(s) 1514
HhaI GCGC 6 cut(s) 496, 585, 1364, 1637, 1794, 2212
Hin1I GRCGYC 1 cut(s) 1506
Hin6I GCGC 6 cut(s) 494, 583, 1362, 1635, 1792, 2210
HinP1I GCGC 6 cut(s) 494, 583, 1362, 1635, 1792, 2210
HincII GTYRAC 2 cut(s) 868, 931
HindII GTYRAC 2 cut(s) 868, 931
HindIII AAGCTT 3 cut(s) 384, 993, 1802
HpaII CCGG 5 cut(s) 183, 1434, 1643, 2335, 2590
HphI GGTGA 2 cut(s) 689, 2284
Hpy166II GTNNAC 8 cut(s) 438, 562, 645, 808, 868, 931, 1891, 2471
Hpy188I TCNGA 8 cut(s) 456, 592, 672, 707, 825, 2024, 2110, 2318
Hpy8I GTNNAC 8 cut(s) 438, 562, 645, 808, 868, 931, 1891, 2471
HpyAV CCTTC 7 cut(s) 21, 716, 901, 1078, 1448, 1858, 2429
HpyCH4III ACNGT 7 cut(s) 124, 649, 1390, 1858, 2261, 2417, 2462
HpyCH4IV ACGT 6 cut(s) 440, 636, 746, 1049, 1140, 2190
HpyF10VI GCNNNNNNNGC 6 cut(s) 266, 908, 992, 1370, 1481, 1874
HpySE526I ACGT 6 cut(s) 440, 636, 746, 1049, 1140, 2190
Hsp92I GRCGYC 1 cut(s) 1506
HspAI GCGC 6 cut(s) 494, 583, 1362, 1635, 1792, 2210
Ksp22I TGATCA 4 cut(s) 1039, 1260, 1615, 2172
Kzo9I GATC 8 cut(s) 3, 1039, 1260, 1332, 1615, 2160, 2172, 2564
LmnI GCTCC 2 cut(s) 486, 2056
Lsp1109I GCAGC 8 cut(s) 129, 247, 1063, 1189, 1864, 1931, 1999, 2079
LweI GCATC 5 cut(s) 298, 782, 1189, 1999, 2054
MabI ACCWGGT 1 cut(s) 1750
MaeI CTAG 3 cut(s) 753, 1998, 2249
MaeII ACGT 6 cut(s) 440, 636, 746, 1049, 1140, 2190
MaeIII GTNAC 2 cut(s) 547, 610
MalI GATC 8 cut(s) 5, 1041, 1262, 1334, 1617, 2162, 2174, 2566
MbiI CCGCTC 1 cut(s) 1915
MboI GATC 8 cut(s) 3, 1039, 1260, 1332, 1615, 2160, 2172, 2564
MboII GAAGA 9 cut(s) 291, 1001, 1045, 1514, 1685, 2018, 2037, 2123, 2378
MflI RGATCY 1 cut(s) 1332
MhlI GDGCHC 5 cut(s) 423, 802, 810, 1764, 2311
MlsI TGGCCA 1 cut(s) 1404
MluNI TGGCCA 1 cut(s) 1404
MlyI GAGTC 6 cut(s) 146, 198, 276, 607, 1517, 1607
Mox20I TGGCCA 1 cut(s) 1404
Mph1103I ATGCAT 3 cut(s) 1771, 1775, 2097
MroXI GAANNNNTTC 3 cut(s) 44, 701, 2122
MscI TGGCCA 1 cut(s) 1404
MslI CAYNNNNRTG 2 cut(s) 813, 959
Msp20I TGGCCA 1 cut(s) 1404
MspA1I CMGCKG 1 cut(s) 2070
MspCI CTTAAG 1 cut(s) 2051
MspI CCGG 5 cut(s) 183, 1434, 1643, 2335, 2590
MspR9I CCNGG 4 cut(s) 1752, 2061, 2304, 2336
Mva1269I GAATGC 1 cut(s) 411
MvaI CCWGG 3 cut(s) 1752, 2061, 2304
MvnI CGCG 1 cut(s) 2485
MwoI GCNNNNNNNGC 6 cut(s) 266, 908, 992, 1370, 1481, 1874
NciI CCSGG 1 cut(s) 2336
NdeII GATC 8 cut(s) 3, 1039, 1260, 1332, 1615, 2160, 2172, 2564
NlaIV GGNNCC 4 cut(s) 1845, 1944, 2058, 2310
NmeAIII GCCGAG 2 cut(s) 212, 249
NmuCI GTSAC 2 cut(s) 547, 610
NruI TCGCGA 1 cut(s) 2485
NsiI ATGCAT 3 cut(s) 1771, 1775, 2097
NspI RCATGY 6 cut(s) 568, 715, 874, 1773, 1884, 1984
OliI CACNNNNGTG 1 cut(s) 813
PaeI GCATGC 1 cut(s) 1773
PagI TCATGA 3 cut(s) 1288, 2163, 2215
PciI ACATGT 3 cut(s) 564, 870, 1980
PctI GAATGC 1 cut(s) 411
PdmI GAANNNNTTC 3 cut(s) 44, 701, 2122
PfeI GAWTC 8 cut(s) 84, 128, 731, 981, 1721, 2019, 2329, 2408
PflMI CCANNNNNTGG 1 cut(s) 336
PkrI GCNGC 9 cut(s) 119, 262, 1078, 1204, 1879, 1921, 1993, 2014, 2069
Ple19I CGATCG 1 cut(s) 2567
PleI GAGTC 6 cut(s) 145, 197, 276, 607, 1517, 1606
PpsI GAGTC 6 cut(s) 145, 197, 276, 607, 1517, 1606
Ppu21I YACGTR 2 cut(s) 1050, 2191
PscI ACATGT 3 cut(s) 564, 870, 1980
Psp6I CCWGG 3 cut(s) 1750, 2059, 2302
PspFI CCCAGC 1 cut(s) 428
PspGI CCWGG 3 cut(s) 1750, 2059, 2302
PspN4I GGNNCC 4 cut(s) 1845, 1944, 2058, 2310
PspPI GGNCC 3 cut(s) 199, 1251, 1754
PstI CTGCAG 1 cut(s) 1330
PstNI CAGNNNCTG 2 cut(s) 596, 770
PsuI RGATCY 1 cut(s) 1332
PvuI CGATCG 1 cut(s) 2567
PvuII CAGCTG 1 cut(s) 2070
RruI TCGCGA 1 cut(s) 2485
RsaI GTAC 7 cut(s) 359, 437, 665, 1275, 1712, 1890, 2598
RsaNI GTAC 7 cut(s) 358, 436, 664, 1274, 1711, 1889, 2597
RseI CAYNNNNRTG 2 cut(s) 813, 959
SatI GCNGC 9 cut(s) 118, 261, 1077, 1203, 1878, 1920, 1992, 2013, 2068
Sau3AI GATC 8 cut(s) 3, 1039, 1260, 1332, 1615, 2160, 2172, 2564
Sau96I GGNCC 3 cut(s) 199, 1251, 1754
ScaI AGTACT 1 cut(s) 1712
SchI GAGTC 6 cut(s) 146, 198, 276, 607, 1517, 1607
ScrFI CCNGG 4 cut(s) 1752, 2061, 2304, 2336
SduI GDGCHC 5 cut(s) 423, 802, 810, 1764, 2311
SexAI ACCWGGT 1 cut(s) 1750
SfaNI GCATC 5 cut(s) 298, 782, 1189, 1999, 2054
SfcI CTRYAG 1 cut(s) 1326
SinI GGWCC 2 cut(s) 1251, 1754
SmiMI CAYNNNNRTG 2 cut(s) 813, 959
SmlI CTYRAG 1 cut(s) 2051
SmoI CTYRAG 1 cut(s) 2051
SnaBI TACGTA 1 cut(s) 1050
SphI GCATGC 1 cut(s) 1773
SsiI CCGC 7 cut(s) 115, 202, 1205, 1491, 1915, 1991, 2550
SspI AATATT 2 cut(s) 538, 1671
SspMI CTAG 3 cut(s) 753, 1998, 2249
StyD4I CCNGG 4 cut(s) 1750, 2059, 2302, 2334
StyI CCWWGG 1 cut(s) 861
TaaI ACNGT 7 cut(s) 124, 649, 1390, 1858, 2261, 2417, 2462
TaiI ACGT 6 cut(s) 443, 639, 749, 1052, 1143, 2193
TatI WGTACW 4 cut(s) 435, 1273, 1710, 1888
TauI GCSGC 1 cut(s) 1994
TfiI GAWTC 8 cut(s) 84, 128, 731, 981, 1721, 2019, 2329, 2408
TscAI CASTG 4 cut(s) 127, 454, 1875, 2266
TseFI GTSAC 2 cut(s) 547, 610
TseI GCWGC 8 cut(s) 117, 260, 1076, 1202, 1877, 1919, 2012, 2067
Tsp45I GTSAC 2 cut(s) 547, 610
TspGWI ACGGA 2 cut(s) 149, 825
TspRI CASTG 4 cut(s) 127, 454, 1875, 2266
Van91I CCANNNNNTGG 1 cut(s) 336
Vha464I CTTAAG 1 cut(s) 2051
VneI GTGCAC 1 cut(s) 806
VpaK11BI GGWCC 2 cut(s) 1251, 1754
XapI RAATTY 9 cut(s) 44, 1397, 1410, 2046, 2203, 2319, 2366, 2489, 2541
XbaI TCTAGA 1 cut(s) 1997
XceI RCATGY 6 cut(s) 568, 715, 874, 1773, 1884, 1984
XmiI GTMKAC 1 cut(s) 2470
XmnI GAANNNNTTC 3 cut(s) 44, 701, 2122
XspI CTAG 3 cut(s) 753, 1998, 2249
ZrmI AGTACT 1 cut(s) 1712
Zsp2I ATGCAT 3 cut(s) 1771, 1775, 2097
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.