Rroxscaffold_3G00226310

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0016644
Physical Location & Seq
Forward (+)
9805964 .. 9812895
6932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00226310.1

Sequence Viewer

Length: 2442 bp
ATGATTATGAACAAATTACACTCAAAAAAGTTTTTTACTTTTCACCACAATGCTTATCAGTTCGAGCAAAGAGTCTCAACCCATTTCATCCATAGCATTGTGGATGCAACCCAGTCTAAGTTCGACTCCAATCTACTACTAAAGCGGTTATCTGTTTCTGGTCGAATCGATGATGCCCGCCAAGTGTTCGATAAAATGCCGAGCAGAGATGAGTTCACTTGGAATACTATGATAGCTGCTTATGCCAATTCAGGAAGACTAACCGAAGCTAAACAAGTCTTTGATGCCACCCCAAGTAAGACTGCCATCACTTGGTCCTCACTCATATCTGGGTACTGTCGAAATGGGTGTCAGAGTGAAGCTTTCGAATCGTTTTGGCAAATGCAGCTCGAGGGAGAAAGGCCGAGCCAGTACACATTGGGCAGCGTACTGAGGTTGTGTGCTGCATTGGGTTTGATCCAAAGAGGTGAAATGGTGCATGGATATATGGTGAAAACCCAGTTTGATAGTAATGTTGATGTAGTTACTGGTTTGGTTGACATGTATGCAAAGTGCAAGCGTGTTTTTGAAGCCGAATGTGTATTTGAGAGTTTGCGGGATACGAAAAATCATGTCGTGTGGACTGTCATGCTTACCGGATACTCTCAGAATGGGGATGGCTTGAAGGCATTGAAGTGTTTTCGAGACATGCGAGCACAAGGGGTTGAATCCAATCAGTTCACATTTCCTAGCATATTGACTGCTGCTGCGTCGGTTTTAGCCCTTGGTTTTGGGGCTCAGGTGCATGGATGCATTATTCAGAGTGGTTTTGGGCCTAACGTGTTTGTTCAAAGTGCATTGGTTGACATGTACGTGAAATGTGGAGATCATATCAGTGCAAAGAAGGCACTAAGAAGCATGGAGGTTGACGATGTTGTCTCTTGGAACTCGATGATTGTTGGATGTGTAAGGCAGGGGTTTATACGAGAAGCTTTATCGTTGTTTAGAGAAATGCGTTCAAGAGAAATGAAGATTGATGATTATACATATCCATCAGTTCTGAACTCATTTGCTGCACTGAAGGACGTTAAAAATGCAATGGCGGTTCATTGTCTGATAGTTAAGACTGGATTTGAGGTTTATCAACTTGTAGCCAATGCTCTGGTTGATATGTATGCTAAACAGGGAAATATAGAATCTGCACTTGAGATGTTTAGGCATATTCCAGACAAAGATGTTATCTCTTGGACCTCCCTGGTAACAGGCTATGCACAGAATGGCACTCATAAAAAAGCACTTAAATTATTCTGCGAGATGAGGGATGCAGGGATCTGTCCTGACCAATTTGTCATTGCCAGCATTTTGAGTGCCTGTGCAGAACTGACACTTTTGGAGTTTGGCCAACAAATTCATGCAAATTTCATCAAGTCTGGCCTTCAAGCATCATTATCAGTAGATAATTCCTTTGTAACGATGTATGCAAAGTGTGGGTGTCTAGAAGAGGCTAATAGAGTTTTTGATTCTATGCAAGTTCAAAATGTGATTACTTGGACAGCTTTGATAGTTGGTTATGCCCAGAATGGTAGAGGAAAGGAATCTCTAAAATTCTACGATCAAATGCTTGCAACTGGCACCCAACCAGACTTCATCACTTTTATTGGCTTGTTATTTGCTTGTAGCCATGCTGGTCTTCTAGAAAAAGGTCAGTACTACTTTGAATCGATGAATAGGGTTTATGGAATAAAACCAGGTCCTGAGCACTATGCATGTATGATTGACCTCTTGGGGCGCTCAGGGAGGCTTAACGAGGCTGAGGCATTAGTTAATCAAATGGCTGTAGAACCTGATGGAACTGTATGGAAGGCACTACTTGCTGCATGTAGAGTACATGGGAAAATAGAGCTGGGAGAGAGGGCTGCGGAGAACCTATTTATATTGGAGCCTATGAATGCTGTGCCTTATGTTCAGTTATCTAACATGTATTCTGCAGCTGGTAGATGGGAAGATGCGGCAAGAATCAGAAGACTGATGAAATCAAAGGGAATTCTTAAGGAGCCTGGATGTAGTTGGATTGAGATGAATGGCCAAGTTCATACCTTTATGTCTGAAGACAGAAGCCATTCATGGACAACTGAAATATATTCAAAAATTGATGAGATCATGATGTTTATCAAGGAAGCTGGATACATGCCAGATATGAATTTTGCACTACATGACATGGATAAAGAGGGGAAGGAGCTTGGCCTAGCATATCACAGCGAGAAGTTGGCCATTGCTTTTGGCCTTCTCACCACACCGCCAGGGGCACCAATTCGAGTTTTTAAGAATCTCCGGGTTTGTGGAGATTGTCATACTGCAATGAAATATATATCACGGGTTTATCTTCGTCATATTATATTGAGGGATTCAAATTGTTTTCATCATTTTAAAGAAGGGAAGTGTTCTTGTGATGACTACTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR

Protein Analysis

813

Amino Acids

91.44

Weight (kDa)

6.92

Isoelectric Point (pI)

36.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 101 - 147 1.5e-06 PPR repeat family
PPR_2 PF13041 203 - 248 3.6e-09 PPR repeat family
PPR PF01535 205 - 235 2.3e-06 PPR repeat
PPR_2 PF13041 304 - 351 4.3e-12 PPR repeat family
PPR PF01535 306 - 334 1.6e-08 PPR repeat
PPR_2 PF13041 404 - 452 9.4e-10 PPR repeat family
PPR PF01535 407 - 437 2.5e-07 PPR repeat
PPR_2 PF13041 506 - 553 9.8e-09 PPR repeat family
E_motif PF20431 623 - 685 5.4e-20 E motif
DYW_deaminase PF14432 721 - 813 2.1e-40 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016644)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61170
fragaria_vesca FvH4_5g34470
malus_domestica MD07G1126900.v1.1
prunus_persica Prupe.2G157100_v2.0.a1
pyrus_communis pycom07g12240
rosa_chinensis RchiOBHm_Chr7g0235091
rosa_multiflora Rmu_sc0002239.1_g000010
rosa_roxburghii Rroxscaffold_3G00226310
rosa_rugosa Rorug07G0287300 Rorug07G0287400
rosa_samantha Rh7AG442400 Rh7BG415000 Rh7CG463300
rosa_wichuraiana Rw7G036780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 914, 1325
AccB1I GGYRCC 2 cut(s) 1610, 2284
AccB7I CCANNNNNTGG 1 cut(s) 312
AciI CCGC 7 cut(s) 145, 178, 595, 1082, 1898, 1988, 2276
AclWI GGATC 2 cut(s) 451, 1316
AcoI YGGCCR 3 cut(s) 1378, 2062, 2247
AcsI RAATTY 5 cut(s) 1386, 1396, 1583, 2022, 2179
AcuI CTGAAG 2 cut(s) 1079, 2106
AfaI GTAC 6 cut(s) 335, 413, 429, 851, 1688, 1866
AfiI CCNNNNNNNGG 1 cut(s) 312
AflII CTTAAG 1 cut(s) 2027
AflIII ACRYGT 4 cut(s) 540, 819, 846, 1956
AjnI CCWGG 4 cut(s) 1233, 1726, 2035, 2278
Alw21I GWGCWC 2 cut(s) 697, 1740
Alw26I GTCTC 3 cut(s) 79, 678, 922
AlwI GGATC 2 cut(s) 451, 1316
AlwNI CAGNNNCTG 1 cut(s) 1733
Ama87I CYCGRG 1 cut(s) 389
AoxI GGCC 8 cut(s) 401, 812, 1378, 1411, 2062, 2221, 2247, 2260
ApoI RAATTY 5 cut(s) 1386, 1396, 1583, 2022, 2179
ArsI GACNNNNNNTTYG 2 cut(s) 334, 366
Asp700I GAANNNNTTC 1 cut(s) 2098
AspLEI GCGC 1 cut(s) 1770
AspS9I GGNCC 4 cut(s) 315, 812, 1227, 1730
AsuC2I CCSGG 1 cut(s) 2312
AsuHPI GGTGA 4 cut(s) 35, 479, 502, 2260
AsuII TTCGAA 1 cut(s) 366
AvaI CYCGRG 1 cut(s) 389
AvaII GGWCC 3 cut(s) 315, 1227, 1730
BaeGI GKGCMC 1 cut(s) 2287
BalI TGGCCA 3 cut(s) 1380, 2064, 2249
BanI GGYRCC 2 cut(s) 1610, 2284
BanII GRGCYC 1 cut(s) 778
BbsI GAAGAC 4 cut(s) 262, 1661, 2008, 2094
Bbv12I GWGCWC 2 cut(s) 697, 1740
BbvCI CCTCAGC 1 cut(s) 1791
BccI CCATC 5 cut(s) 314, 650, 1039, 1820, 1971
BciT130I CCWGG 4 cut(s) 1235, 1728, 2037, 2280
BciVI GTATCC 3 cut(s) 592, 632, 2156
BcnI CCSGG 1 cut(s) 2312
BcoDI GTCTC 3 cut(s) 79, 678, 922
BfaI CTAG 4 cut(s) 729, 1475, 1673, 2225
BfmI CTRYAG 2 cut(s) 1815, 1965
BfoI RGCGCY 1 cut(s) 1771
BfrI CTTAAG 1 cut(s) 2027
BfuI GTATCC 3 cut(s) 592, 632, 2156
BmcAI AGTACT 1 cut(s) 1688
Bme1390I CCNGG 5 cut(s) 1235, 1728, 2037, 2280, 2312
Bme18I GGWCC 3 cut(s) 315, 1227, 1730
BmeT110I CYCGRG 1 cut(s) 389
BmgT120I GGNCC 4 cut(s) 315, 812, 1227, 1730
BmiI GGNNCC 4 cut(s) 1612, 1920, 2034, 2286
BmrFI CCNGG 5 cut(s) 1235, 1728, 2037, 2280, 2312
BmrI ACTGGG 2 cut(s) 106, 493
BmsI GCATC 7 cut(s) 94, 163, 274, 779, 1291, 1430, 1975
BmuI ACTGGG 2 cut(s) 106, 493
BpiI GAAGAC 4 cut(s) 262, 1661, 2008, 2094
Bpu10I CCTNAGC 4 cut(s) 777, 1734, 1771, 1791
Bpu14I TTCGAA 1 cut(s) 366
BpuEI CTTGAG 1 cut(s) 1205
BpuMI CCSGG 1 cut(s) 2312
Bsa29I ATCGAT 2 cut(s) 168, 1700
BsaAI YACGTR 1 cut(s) 853
BsaBI GATNNNNATC 1 cut(s) 2147
BsaJI CCNNGG 3 cut(s) 763, 1233, 2279
BsaWI WCCGGW 1 cut(s) 635
Bsc4I CCNNNNNNNGG 1 cut(s) 312
Bse1I ACTGG 7 cut(s) 112, 409, 499, 532, 1111, 1612, 2441
Bse3DI GCAATG 4 cut(s) 1083, 1329, 2250, 2343
Bse8I GATNNNNATC 1 cut(s) 2147
BseBI CCWGG 4 cut(s) 1235, 1728, 2037, 2280
BseCI ATCGAT 2 cut(s) 168, 1700
BseDI CCNNGG 3 cut(s) 763, 1233, 2279
BseGI GGATG 7 cut(s) 87, 109, 661, 794, 947, 1306, 2045
BseJI GATNNNNATC 1 cut(s) 2147
BseLI CCNNNNNNNGG 1 cut(s) 312
BseMI GCAATG 4 cut(s) 1083, 1329, 2250, 2343
BseMII CTCAG 6 cut(s) 422, 659, 791, 1725, 1782, 1785
BseNI ACTGG 7 cut(s) 112, 409, 499, 532, 1111, 1612, 2441
BseSI GKGCMC 1 cut(s) 2287
BseYI CCCAGC 1 cut(s) 1882
BsgI GTGCAG 3 cut(s) 1038, 1164, 1374
BshFI GGCC 8 cut(s) 403, 814, 1380, 1413, 2064, 2223, 2249, 2262
BshNI GGYRCC 2 cut(s) 1610, 2284
BshVI ATCGAT 2 cut(s) 168, 1700
BsiHKAI GWGCWC 2 cut(s) 697, 1740
BsiHKCI CYCGRG 1 cut(s) 389
BsiSI CCGG 2 cut(s) 636, 2311
BslI CCNNNNNNNGG 1 cut(s) 312
BsmAI GTCTC 3 cut(s) 79, 678, 922
BsmI GAATGC 1 cut(s) 1933
BsnI GGCC 8 cut(s) 403, 814, 1380, 1413, 2064, 2223, 2249, 2262
BsoBI CYCGRG 1 cut(s) 389
Bsp119I TTCGAA 1 cut(s) 366
Bsp1286I GDGCHC 4 cut(s) 697, 778, 1740, 2287
Bsp143I GATC 5 cut(s) 456, 865, 1308, 1591, 2136
BspACI CCGC 7 cut(s) 145, 178, 595, 1082, 1898, 1988, 2276
BspANI GGCC 8 cut(s) 403, 814, 1380, 1413, 2064, 2223, 2249, 2262
BspCNI CTCAG 6 cut(s) 423, 658, 790, 1726, 1783, 1784
BspDI ATCGAT 2 cut(s) 168, 1700
BspHI TCATGA 1 cut(s) 2139
BspLI GGNNCC 4 cut(s) 1612, 1920, 2034, 2286
BspMAI CTGCAG 1 cut(s) 1969
BspPI GGATC 2 cut(s) 451, 1316
BspT104I TTCGAA 1 cut(s) 366
BspT107I GGYRCC 2 cut(s) 1610, 2284
BspTI CTTAAG 1 cut(s) 2027
BsrDI GCAATG 4 cut(s) 1083, 1329, 2250, 2343
BsrI ACTGG 7 cut(s) 112, 409, 499, 532, 1111, 1612, 2441
BssECI CCNNGG 3 cut(s) 763, 1233, 2279
BssMI GATC 5 cut(s) 456, 865, 1308, 1591, 2136
BssT1I CCWWGG 1 cut(s) 763
Bst2UI CCWGG 4 cut(s) 1235, 1728, 2037, 2280
Bst4CI ACNGT 3 cut(s) 338, 625, 1834
Bst6I CTCTTC 1 cut(s) 1473
BstAFI CTTAAG 1 cut(s) 2027
BstAPI GCANNNNNTGC 1 cut(s) 1850
BstBAI YACGTR 1 cut(s) 853
BstBI TTCGAA 1 cut(s) 366
BstC8I GCNNGC 5 cut(s) 178, 557, 693, 1336, 1602
BstDEI CTNAG 8 cut(s) 117, 431, 645, 777, 890, 1734, 1771, 1791
BstF5I GGATG 7 cut(s) 87, 109, 661, 794, 947, 1306, 2045
BstH2I RGCGCY 1 cut(s) 1771
BstHHI GCGC 1 cut(s) 1770
BstKTI GATC 5 cut(s) 459, 868, 1311, 1594, 2139
BstMAI GTCTC 3 cut(s) 79, 678, 922
BstMBI GATC 5 cut(s) 456, 865, 1308, 1591, 2136
BstMWI GCNNNNNNNGC 4 cut(s) 242, 385, 884, 1850
BstNI CCWGG 4 cut(s) 1235, 1728, 2037, 2280
BstNSI RCATGY 7 cut(s) 544, 691, 850, 1749, 1860, 1960, 2170
BstSCI CCNGG 5 cut(s) 1233, 1726, 2035, 2278, 2310
BstSFI CTRYAG 2 cut(s) 1815, 1965
BstSLI GKGCMC 1 cut(s) 2287
BstV2I GAAGAC 4 cut(s) 262, 1661, 2008, 2094
BstX2I RGATCY 1 cut(s) 1308
BstXI CCANNNNNNTGG 1 cut(s) 1141
BstYI RGATCY 1 cut(s) 1308
Bsu15I ATCGAT 2 cut(s) 168, 1700
BsuI GTATCC 3 cut(s) 592, 632, 2156
BsuRI GGCC 8 cut(s) 403, 814, 1380, 1413, 2064, 2223, 2249, 2262
BsuTUI ATCGAT 2 cut(s) 168, 1700
BtsCI GGATG 7 cut(s) 87, 109, 661, 794, 947, 1306, 2045
BtsIMutI CAGTG 2 cut(s) 880, 1055
Cac8I GCNNGC 5 cut(s) 178, 557, 693, 1336, 1602
CaiI CAGNNNCTG 1 cut(s) 1733
CciI TCATGA 1 cut(s) 2139
CfoI GCGC 1 cut(s) 1770
Cfr13I GGNCC 4 cut(s) 315, 812, 1227, 1730
ClaI ATCGAT 2 cut(s) 168, 1700
CseI GACGC 1 cut(s) 738
CsiI ACCWGGT 1 cut(s) 1726
Csp6I GTAC 6 cut(s) 334, 412, 428, 850, 1687, 1865
CviQI GTAC 6 cut(s) 334, 412, 428, 850, 1687, 1865
DdeI CTNAG 8 cut(s) 117, 431, 645, 777, 890, 1734, 1771, 1791
DpnI GATC 5 cut(s) 458, 867, 1310, 1593, 2138
DpnII GATC 5 cut(s) 456, 865, 1308, 1591, 2136
DraI TTTAAA 1 cut(s) 2407
DrdI GACNNNNNNGTC 2 cut(s) 914, 1325
DseDI GACNNNNNNGTC 2 cut(s) 914, 1325
EaeI YGGCCR 3 cut(s) 1378, 2062, 2247
Eam1104I CTCTTC 1 cut(s) 1473
EarI CTCTTC 1 cut(s) 1473
Eco130I CCWWGG 1 cut(s) 763
Eco24I GRGCYC 1 cut(s) 778
Eco47I GGWCC 3 cut(s) 315, 1227, 1730
Eco57I CTGAAG 2 cut(s) 1079, 2106
Eco88I CYCGRG 1 cut(s) 389
EcoO109I RGGNCCY 1 cut(s) 1730
EcoRI GAATTC 1 cut(s) 2022
EcoRII CCWGG 4 cut(s) 1233, 1726, 2035, 2278
EcoT14I CCWWGG 1 cut(s) 763
EcoT22I ATGCAT 2 cut(s) 794, 1747
EcoT38I GRGCYC 1 cut(s) 778
ErhI CCWWGG 1 cut(s) 763
FauI CCCGC 2 cut(s) 185, 588
FokI GGATG 7 cut(s) 74, 116, 668, 801, 954, 1313, 2052
FriOI GRGCYC 1 cut(s) 778
FspBI CTAG 4 cut(s) 729, 1475, 1673, 2225
GlaI GCGC 1 cut(s) 1769
GsaI CCCAGC 1 cut(s) 1886
HaeII RGCGCY 1 cut(s) 1771
HaeIII GGCC 8 cut(s) 403, 814, 1380, 1413, 2064, 2223, 2249, 2262
HapII CCGG 2 cut(s) 636, 2311
HgaI GACGC 1 cut(s) 738
HhaI GCGC 1 cut(s) 1770
Hin6I GCGC 1 cut(s) 1768
HinP1I GCGC 1 cut(s) 1768
HincII GTYRAC 3 cut(s) 538, 844, 907
HindII GTYRAC 3 cut(s) 538, 844, 907
HindIII AAGCTT 2 cut(s) 360, 969
HpaII CCGG 2 cut(s) 636, 2311
HphI GGTGA 4 cut(s) 35, 479, 502, 2260
Hpy166II GTNNAC 7 cut(s) 216, 414, 538, 621, 720, 844, 907
Hpy188I TCNGA 7 cut(s) 354, 648, 801, 1041, 1095, 2000, 2086
Hpy188III TCNNGA 9 cut(s) 252, 683, 999, 1205, 1316, 1475, 1673, 1733, 2140
Hpy8I GTNNAC 7 cut(s) 216, 414, 538, 621, 720, 844, 907
Hpy99I CGWCG 1 cut(s) 754
HpyAV CCTTC 8 cut(s) 658, 877, 1054, 1424, 1834, 2206, 2273, 2405
HpyCH4III ACNGT 3 cut(s) 338, 625, 1834
HpyCH4IV ACGT 3 cut(s) 819, 852, 1065
HpyF10VI GCNNNNNNNGC 4 cut(s) 242, 385, 884, 1850
HpyF3I CTNAG 8 cut(s) 117, 431, 645, 777, 890, 1734, 1771, 1791
HpySE526I ACGT 3 cut(s) 819, 852, 1065
HspAI GCGC 1 cut(s) 1768
Kzo9I GATC 5 cut(s) 456, 865, 1308, 1591, 2136
LmnI GCTCC 3 cut(s) 1918, 2032, 2215
LweI GCATC 7 cut(s) 94, 163, 274, 779, 1291, 1430, 1975
MabI ACCWGGT 1 cut(s) 1726
MaeI CTAG 4 cut(s) 729, 1475, 1673, 2225
MaeII ACGT 3 cut(s) 819, 852, 1065
MaeIII GTNAC 3 cut(s) 523, 1237, 1447
MalI GATC 5 cut(s) 458, 867, 1310, 1593, 2138
MboI GATC 5 cut(s) 456, 865, 1308, 1591, 2136
MboII GAAGA 8 cut(s) 267, 1021, 1490, 1661, 1994, 2013, 2099, 2354
MflI RGATCY 1 cut(s) 1308
MhlI GDGCHC 4 cut(s) 697, 778, 1740, 2287
MlsI TGGCCA 3 cut(s) 1380, 2064, 2249
MluNI TGGCCA 3 cut(s) 1380, 2064, 2249
MlyI GAGTC 2 cut(s) 81, 119
MmeI TCCRAC 2 cut(s) 919, 2027
Mox20I TGGCCA 3 cut(s) 1380, 2064, 2249
Mph1103I ATGCAT 2 cut(s) 794, 1747
MroXI GAANNNNTTC 1 cut(s) 2098
MscI TGGCCA 3 cut(s) 1380, 2064, 2249
MseI TTAA 8 cut(s) 1068, 1101, 1278, 1782, 1803, 2028, 2301, 2406
MslI CAYNNNNRTG 4 cut(s) 48, 673, 851, 873
Msp20I TGGCCA 3 cut(s) 1380, 2064, 2249
MspA1I CMGCKG 1 cut(s) 1970
MspCI CTTAAG 1 cut(s) 2027
MspI CCGG 2 cut(s) 636, 2311
MspR9I CCNGG 5 cut(s) 1235, 1728, 2037, 2280, 2312
Mva1269I GAATGC 1 cut(s) 1933
MvaI CCWGG 4 cut(s) 1235, 1728, 2037, 2280
MwoI GCNNNNNNNGC 4 cut(s) 242, 385, 884, 1850
NciI CCSGG 1 cut(s) 2312
NdeII GATC 5 cut(s) 456, 865, 1308, 1591, 2136
NlaIV GGNNCC 4 cut(s) 1612, 1920, 2034, 2286
NmeAIII GCCGAG 2 cut(s) 225, 429
NsiI ATGCAT 2 cut(s) 794, 1747
NspI RCATGY 7 cut(s) 544, 691, 850, 1749, 1860, 1960, 2170
NspV TTCGAA 1 cut(s) 366
PaeR7I CTCGAG 1 cut(s) 389
PagI TCATGA 1 cut(s) 2139
PciI ACATGT 3 cut(s) 540, 846, 1956
PcsI WCGNNNNNNNCGW 1 cut(s) 688
PctI GAATGC 1 cut(s) 1933
PdmI GAANNNNTTC 1 cut(s) 2098
PflMI CCANNNNNTGG 1 cut(s) 312
PleI GAGTC 2 cut(s) 80, 119
PpsI GAGTC 2 cut(s) 80, 119
Ppu21I YACGTR 1 cut(s) 853
PpuMI RGGWCCY 1 cut(s) 1730
PscI ACATGT 3 cut(s) 540, 846, 1956
Psp5II RGGWCCY 1 cut(s) 1730
Psp6I CCWGG 4 cut(s) 1233, 1726, 2035, 2278
PspFI CCCAGC 1 cut(s) 1882
PspGI CCWGG 4 cut(s) 1233, 1726, 2035, 2278
PspN4I GGNNCC 4 cut(s) 1612, 1920, 2034, 2286
PspPI GGNCC 4 cut(s) 315, 812, 1227, 1730
PspPPI RGGWCCY 1 cut(s) 1730
PspXI VCTCGAGB 1 cut(s) 389
PstI CTGCAG 1 cut(s) 1969
PstNI CAGNNNCTG 1 cut(s) 1733
PsuI RGATCY 1 cut(s) 1308
PvuII CAGCTG 1 cut(s) 1970
RsaI GTAC 6 cut(s) 335, 413, 429, 851, 1688, 1866
RsaNI GTAC 6 cut(s) 334, 412, 428, 850, 1687, 1865
RseI CAYNNNNRTG 4 cut(s) 48, 673, 851, 873
SaqAI TTAA 8 cut(s) 1068, 1101, 1278, 1782, 1803, 2028, 2301, 2406
Sau3AI GATC 5 cut(s) 456, 865, 1308, 1591, 2136
Sau96I GGNCC 4 cut(s) 315, 812, 1227, 1730
ScaI AGTACT 1 cut(s) 1688
SchI GAGTC 2 cut(s) 81, 119
ScrFI CCNGG 5 cut(s) 1235, 1728, 2037, 2280, 2312
SduI GDGCHC 4 cut(s) 697, 778, 1740, 2287
SexAI ACCWGGT 1 cut(s) 1726
SfaNI GCATC 7 cut(s) 94, 163, 274, 779, 1291, 1430, 1975
SfcI CTRYAG 2 cut(s) 1815, 1965
Sfr274I CTCGAG 1 cut(s) 389
SfuI TTCGAA 1 cut(s) 366
SinI GGWCC 3 cut(s) 315, 1227, 1730
SlaI CTCGAG 1 cut(s) 389
SmiMI CAYNNNNRTG 4 cut(s) 48, 673, 851, 873
SmlI CTYRAG 3 cut(s) 389, 1184, 2027
SmoI CTYRAG 3 cut(s) 389, 1184, 2027
SsiI CCGC 7 cut(s) 145, 178, 595, 1082, 1898, 1988, 2276
SspMI CTAG 4 cut(s) 729, 1475, 1673, 2225
StyD4I CCNGG 5 cut(s) 1233, 1726, 2035, 2278, 2310
StyI CCWWGG 1 cut(s) 763
TaaI ACNGT 3 cut(s) 338, 625, 1834
TaiI ACGT 3 cut(s) 822, 855, 1068
TatI WGTACW 3 cut(s) 411, 1686, 1864
TauI GCSGC 1 cut(s) 1991
Tru1I TTAA 8 cut(s) 1068, 1101, 1278, 1782, 1803, 2028, 2301, 2406
Tru9I TTAA 8 cut(s) 1068, 1101, 1278, 1782, 1803, 2028, 2301, 2406
TscAI CASTG 2 cut(s) 880, 1062
TspRI CASTG 2 cut(s) 880, 1062
Van91I CCANNNNNTGG 1 cut(s) 312
Vha464I CTTAAG 1 cut(s) 2027
VpaK11BI GGWCC 3 cut(s) 315, 1227, 1730
XapI RAATTY 5 cut(s) 1386, 1396, 1583, 2022, 2179
XbaI TCTAGA 2 cut(s) 1474, 1672
XceI RCATGY 7 cut(s) 544, 691, 850, 1749, 1860, 1960, 2170
XhoI CTCGAG 1 cut(s) 389
XmnI GAANNNNTTC 1 cut(s) 2098
XspI CTAG 4 cut(s) 729, 1475, 1673, 2225
ZrmI AGTACT 1 cut(s) 1688
Zsp2I ATGCAT 2 cut(s) 794, 1747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.