Rmu_sc0002239.1_g000010

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002239.1
Physical Location & Seq
Reverse (-)
40121 .. 46746
6626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002239.1_g000010.1.cds

Sequence Viewer

Length: 4056 bp
atggtcggaaagggagagggaccggcgatcggaatcgatctcggaactacctacagttgcgtcggagtgtggcagcacgaccgcgtcgagatcatcgccaacgatcagggcaacagaacgacgccgtcttacgttgcgttcactgatactgagcggttgatcggcgatgcggccaagaaccaggtcgccatgaaccctgtcaacaccgttttcgatgcgaagcggttaattggtaggagatttggtgactcctctgttcaggcagacatgaagctatggcctttcaaggttgttgccggccctggtgacaagcccatgattattgttacttacaaaggcgaggagaaacaatttgctgcagaagaaatctcgtctatggttctcgtcaagatgcgagagattgcagaggcttatcttgggacaacagtgaagaatgctgttgttaccgtacctgcttacttcaatgactctcagaggcaggctacaaaggatgctggggtcattgctggcctgaatgtgctccgtattatcaatgagcctactgctgctgccattgcgtatggtctggacaagaaggcgaccagtgttggcgagaagaatgtcttgatttttgatcttggaggaggaacctttgatgtttctcttcttacaattgaagaaggtattttcgaggtgaaggctactgctggagatacccatttgggtggtgaggattttgataacaggatggtgaatcactttgttcaggagttcaagaggaagaacaaaaaagacatcagcggaaacccaagagctctaaggaggttgaggacagcttgtgagagagcaaagaggactctctcatccactgctcagaccaccatcgagattgactctctgtttgagggtatcgacttctattcaaccatcacccgtgccagattcgaagagctgaacatggatctgttcaggaagtgtatggagccagttgagaagtgtttgagagatgcaaagatggacaagagcagtgtacatgatgttgtccttgtgggtggatctactaggattcctaaagtgcagcaattgttgcaagacttcttcaatggaaaggaactgtgcaaaagcatcaacccagacgaagctgttgcttatggagcagctgtgcaggctgctattcttagtggtgagggtaatgagaaggtgcaggacctattgcttcttgatgtgactcctctgtccttgggtttggaaactgccggaggtgtgatgactgtgctcatccccaggaatacaacaattccaaccaagaaggagcaggttttctctacctactcggacaaccaacccggtgtcttgatccaggtctttgagggtgagagggcgagaacccgtgataacaatttgcttggcaagtttgagctttccggaattcctcctgcaccaaggggagtacctcagatcacggtctgctttgacatcgatgctaatggcattctcaatgtctctgctgaggacaagactacaggccagaagaacaagattacaatcactaatgacaagggaaggctgtccaaagaggagattgagaagatggttcaagaagctgagaagtataagtcagaagatgaggagctcaagaagaaggtggaatcaaagaatgccctggagaactatgcttataacatgaggaacacgttcgagcaacgagtctcaacccatttcatccatagcattgtggatgcaacccagtccaagttcgactccaatctactactaaagcggttatctgtttctggtcgaatcgatgatgcccgccaagtgttcgatgaaatgccgagcagagatgagttcacttggaatactatgatagctgcttatgccaattcaggaagactaaccgaagctaaacaagtctttgatgctaccccaagtaagactgccattacttggtcctcactcatatctgggtattgtcgaaatgggtgtcaaagcgaagcttttgaatcgttttggcaaatgcagcttgggggagaaaggccgagccagtacacattgggcagtgtactgaggttgtgtgctgcattgggtttgatccaaagaggtgaaatggtgcatggatatatggtgaaaacccagtttgacagtaatgttgatgtagttactggtttggttgacatgtatgcaaagtgcaagcgcgtttttgaagctgaatgtgtatttgagagtttgtgggataggagaaatcatgtcgtgtggactgtcatgcttaccgggtactctcagaatggggatggcttgaaggcattgaagtgttttcgggatatgcgagcacgaggggttgaatccaatcagttcacattccctagcgtattgactgctgctgcgtcggttttagcccttggttttggggctcaggtgcatggatgcattattcagactggttttgggcctaatgtgtttgttcaaagtgcattggttgacatgtacgtgaaatgtggagatcatatcagtgcaaagaaggcactaagaagcatggaggttgacgatgttgtttcttggaactcgatgattgttggatgtgtaaggcaggggtttatacgagaagctttatcgttgtttagagaaatgcgttcaagagaaatgaagattgatgattatacatatccatcagttctgaactcatttgctgcactgaaggacgttaaaaatgcaatggcggttcattgtctgatagttaagactggatttgaggtttatcaacttgtagccaatgctctggttgatatgtatgctaaacagggaaatatagaatctgcacttgagatgtttaggcatattccagacaaagatgttatctcttggacctctctggtaacaggctatgcacagaatggcactcatgaaaaagcacttaaattattctgcgagatgagggatgcagggatctgtcctgaccaatttgtcattgccagcattttgagtgcctgtgcagaactgacacttttggagtttggccaacaaattcatgcaaatttcatcaagtctggccttcaagcatcattatcggtagataattcctttgtaacgatgtatgcaaagtgtgggtgtctagaagaggctaatagagtttttgattctatgcaagttcaaaatgtgattacttggacagctttgatagttggttatgcccagaatggtagaggaaaggagtctctaaaattctacgatcaaatgcttgcaactggcacccaaccagacttcattacttttattggcttgttatttgcttgtagccatgctggtcttcaagaaaaaggtcagtactactttgaatcgatgaatagggtttatggaataaaaccaggtcctgagcactatgcatgtatgattgacctcttggggcgctcagggaggcttaatgaggctgaggcattagttaatcaaatggctgtagaacctgatgggactgtatggaaggcactacttgctgcatgtagagtacatgggaaaatagagctgggagagagggctgcagagaacctatttatattggagcctatgaatgctgtgccttatgttcagttatctaacatgtattctgcagctggtagatgggaagatgcggcaagaatcagaagactgatgaaatcaaagggaattcttaaggagcctggatgtagttggattgagatgaacggccaagttcatacctttatgtctgaagacagaagccattcatgcacaactgaaatatattcaaaaattgatgagatcatgatgcttacaaaggaagctggatacatgccagatatgaattttgcactacatgacatggataaagaggggaaggagcttggcctagcatatcacagcgagaagttggccattgcttttggccttctcaccacaccgccaggggcaccaattcgagtttttaagaatctccgggtttgtggagattgtcatactgcaatgaaatatatatcacgggtttatcttcgtcatattatattgagggattcaaattgttttcatcattttaaagaagggaagtgttcttgtgatgactactggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1351

Amino Acids

150.26

Weight (kDa)

6.11

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016644)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61170
fragaria_vesca FvH4_5g34470
malus_domestica MD07G1126900.v1.1
prunus_persica Prupe.2G157100_v2.0.a1
pyrus_communis pycom07g12240
rosa_chinensis RchiOBHm_Chr7g0235091
rosa_multiflora Rmu_sc0002239.1_g000010
rosa_roxburghii Rroxscaffold_3G00226310
rosa_rugosa Rorug07G0287300 Rorug07G0287400
rosa_samantha Rh7AG442400 Rh7BG415000 Rh7CG463300
rosa_wichuraiana Rw7G036780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1659
AasI GACNNNNNNGTC 2 cut(s) 1213, 2939
Acc36I ACCTGC 2 cut(s) 460, 1285
AccB1I GGYRCC 2 cut(s) 3224, 3898
AccB7I CCANNNNNTGG 1 cut(s) 1926
AccBSI CCGCTC 1 cut(s) 154
AccII CGCG 2 cut(s) 84, 2175
AccIII TCCGGA 1 cut(s) 1403
AclWI GGATC 5 cut(s) 948, 1042, 1330, 2065, 2930
AcoI YGGCCR 4 cut(s) 171, 2992, 3676, 3861
AcsI RAATTY 6 cut(s) 1407, 3000, 3010, 3197, 3636, 3793
AcuI CTGAAG 2 cut(s) 2693, 3720
AcyI GRCGYC 1 cut(s) 122
AfaI GTAC 9 cut(s) 450, 1011, 1431, 2027, 2043, 2255, 2465, 3302, 3480
AfiI CCNNNNNNNGG 2 cut(s) 29, 1926
AflII CTTAAG 1 cut(s) 3641
AflIII ACRYGT 4 cut(s) 1671, 2154, 2460, 3570
AjnI CCWGG 8 cut(s) 180, 301, 1262, 1338, 1641, 3340, 3649, 3892
Alw21I GWGCWC 6 cut(s) 522, 796, 1257, 1614, 2311, 3354
Alw26I GTCTC 3 cut(s) 1486, 1693, 3195
AlwI GGATC 5 cut(s) 948, 1042, 1330, 2065, 2930
AlwNI CAGNNNCTG 1 cut(s) 3347
Aor13HI TCCGGA 1 cut(s) 1403
ApoI RAATTY 6 cut(s) 1407, 3000, 3010, 3197, 3636, 3793
ArsI GACNNNNNNTTYG 4 cut(s) 863, 895, 1948, 1980
Asp700I GAANNNNTTC 2 cut(s) 1673, 3712
AspLEI GCGC 2 cut(s) 2175, 3384
AspS9I GGNCC 7 cut(s) 20, 299, 1186, 1929, 2426, 2841, 3344
AsuC2I CCSGG 3 cut(s) 1326, 2251, 3926
AsuII TTCGAA 1 cut(s) 924
AvaII GGWCC 5 cut(s) 20, 1186, 1929, 2841, 3344
BaeGI GKGCMC 1 cut(s) 3901
BalI TGGCCA 2 cut(s) 2994, 3863
BanI GGYRCC 2 cut(s) 3224, 3898
BanII GRGCYC 3 cut(s) 796, 1614, 2392
BauI CACGAG 1 cut(s) 2310
BbsI GAAGAC 4 cut(s) 1876, 3275, 3622, 3708
Bbv12I GWGCWC 6 cut(s) 522, 796, 1257, 1614, 2311, 3354
BbvCI CCTCAGC 2 cut(s) 1488, 3405
BccI CCATC 9 cut(s) 721, 869, 914, 988, 1564, 2264, 2653, 3434, 3585
BceAI ACGGC 2 cut(s) 109, 3691
BcgI CGANNNNNNTGC 4 cut(s) 1106, 1140, 3024, 3058
BciT130I CCWGG 8 cut(s) 182, 303, 1264, 1340, 1643, 3342, 3651, 3894
BciVI GTATCC 1 cut(s) 3770
BcnI CCSGG 3 cut(s) 1326, 2251, 3926
BcoDI GTCTC 3 cut(s) 1486, 1693, 3195
BfaI CTAG 4 cut(s) 1041, 2343, 3089, 3839
BfmI CTRYAG 6 cut(s) 52, 357, 1500, 3429, 3510, 3579
BfoI RGCGCY 1 cut(s) 3385
BfrI CTTAAG 1 cut(s) 3641
BfuAI ACCTGC 2 cut(s) 460, 1285
BfuI GTATCC 1 cut(s) 3770
BmcAI AGTACT 1 cut(s) 3302
Bme18I GGWCC 5 cut(s) 20, 1186, 1929, 2841, 3344
BmgT120I GGNCC 7 cut(s) 20, 299, 1186, 1929, 2426, 2841, 3344
BmiI GGNNCC 7 cut(s) 21, 628, 963, 3226, 3534, 3648, 3900
BmrI ACTGGG 2 cut(s) 1720, 2107
BmuI ACTGGG 2 cut(s) 1720, 2107
BpiI GAAGAC 4 cut(s) 1876, 3275, 3622, 3708
BplI GAGNNNNNCTC 2 cut(s) 857, 889
BpmI CTGGAG 2 cut(s) 708, 1664
Bpu10I CCTNAGC 5 cut(s) 1488, 2391, 3348, 3385, 3405
Bpu14I TTCGAA 1 cut(s) 924
BpuEI CTTGAG 2 cut(s) 1598, 2819
BpuMI CCSGG 3 cut(s) 1326, 2251, 3926
Bsa29I ATCGAT 4 cut(s) 36, 1458, 1782, 3314
BsaAI YACGTR 1 cut(s) 2467
BsaBI GATNNNNATC 2 cut(s) 32, 1523
BsaHI GRCGYC 1 cut(s) 122
BsaJI CCNNGG 7 cut(s) 301, 1218, 1262, 1421, 1641, 2377, 3893
BsaWI WCCGGW 1 cut(s) 1403
BsaXI ACNNNNNCTCC 4 cut(s) 229, 259, 1125, 1155
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 1926
Bse118I RCCGGY 2 cut(s) 22, 296
Bse3DI GCAATG 6 cut(s) 501, 552, 2697, 2943, 3864, 3957
Bse8I GATNNNNATC 2 cut(s) 32, 1523
BseAI TCCGGA 1 cut(s) 1403
BseBI CCWGG 8 cut(s) 182, 303, 1264, 1340, 1643, 3342, 3651, 3894
BseCI ATCGAT 4 cut(s) 36, 1458, 1782, 3314
BseDI CCNNGG 7 cut(s) 301, 1218, 1262, 1421, 1641, 2377, 3893
BseJI GATNNNNATC 2 cut(s) 32, 1523
BseLI CCNNNNNNNGG 2 cut(s) 29, 1926
BseMI GCAATG 6 cut(s) 501, 552, 2697, 2943, 3864, 3957
BseRI GAGGAG 6 cut(s) 241, 356, 636, 1200, 1571, 1622
BseSI GKGCMC 1 cut(s) 3901
BseYI CCCAGC 2 cut(s) 494, 3496
BsgI GTGCAG 7 cut(s) 1076, 1163, 1202, 1401, 2652, 2778, 2988
Bsh1236I CGCG 2 cut(s) 84, 2175
Bsh1285I CGRYCG 2 cut(s) 30, 82
BshNI GGYRCC 2 cut(s) 3224, 3898
BshVI ATCGAT 4 cut(s) 36, 1458, 1782, 3314
BsiEI CGRYCG 2 cut(s) 30, 82
BsiHKAI GWGCWC 6 cut(s) 522, 796, 1257, 1614, 2311, 3354
BsiSI CCGG 7 cut(s) 23, 297, 1236, 1326, 1404, 2250, 3925
BslFI GGGAC 3 cut(s) 33, 433, 3457
BslI CCNNNNNNNGG 2 cut(s) 29, 1926
BsmAI GTCTC 3 cut(s) 1486, 1693, 3195
BsmFI GGGAC 3 cut(s) 33, 433, 3457
BsmI GAATGC 4 cut(s) 439, 1470, 1642, 3547
Bsp119I TTCGAA 1 cut(s) 924
Bsp1286I GDGCHC 8 cut(s) 522, 796, 1257, 1614, 2311, 2392, 3354, 3901
Bsp13I TCCGGA 1 cut(s) 1403
Bsp1407I TGTACA 1 cut(s) 1009
BspDI ATCGAT 4 cut(s) 36, 1458, 1782, 3314
BspEI TCCGGA 1 cut(s) 1403
BspFNI CGCG 2 cut(s) 84, 2175
BspHI TCATGA 2 cut(s) 2878, 3753
BspLI GGNNCC 7 cut(s) 21, 628, 963, 3226, 3534, 3648, 3900
BspMAI CTGCAG 3 cut(s) 361, 3514, 3583
BspMI ACCTGC 2 cut(s) 460, 1285
BspPI GGATC 5 cut(s) 948, 1042, 1330, 2065, 2930
BspQI GCTCTTC 1 cut(s) 921
BspT104I TTCGAA 1 cut(s) 924
BspT107I GGYRCC 2 cut(s) 3224, 3898
BspTI CTTAAG 1 cut(s) 3641
BsrBI CCGCTC 1 cut(s) 154
BsrDI GCAATG 6 cut(s) 501, 552, 2697, 2943, 3864, 3957
BsrFI RCCGGY 2 cut(s) 22, 296
BsrGI TGTACA 1 cut(s) 1009
BssAI RCCGGY 2 cut(s) 22, 296
BssECI CCNNGG 7 cut(s) 301, 1218, 1262, 1421, 1641, 2377, 3893
BssNI GRCGYC 1 cut(s) 122
BssSI CACGAG 1 cut(s) 2310
BssT1I CCWWGG 3 cut(s) 1218, 1421, 2377
Bst2BI CACGAG 1 cut(s) 2310
Bst2UI CCWGG 8 cut(s) 182, 303, 1264, 1340, 1643, 3342, 3651, 3894
Bst6I CTCTTC 3 cut(s) 648, 921, 3087
BstACI GRCGYC 1 cut(s) 122
BstAFI CTTAAG 1 cut(s) 3641
BstAPI GCANNNNNTGC 2 cut(s) 1066, 3464
BstAUI TGTACA 1 cut(s) 1009
BstBAI YACGTR 1 cut(s) 2467
BstBI TTCGAA 1 cut(s) 924
BstC8I GCNNGC 9 cut(s) 298, 480, 508, 1146, 1792, 2171, 2307, 2950, 3216
BstFNI CGCG 2 cut(s) 84, 2175
BstH2I RGCGCY 1 cut(s) 3385
BstHHI GCGC 2 cut(s) 2175, 3384
BstMAI GTCTC 3 cut(s) 1486, 1693, 3195
BstMCI CGRYCG 2 cut(s) 30, 82
BstMWI GCNNNNNNNGC 9 cut(s) 554, 1066, 1133, 1145, 1856, 1999, 2498, 3464, 3717
BstNI CCWGG 8 cut(s) 182, 303, 1264, 1340, 1643, 3342, 3651, 3894
BstNSI RCATGY 6 cut(s) 2158, 2464, 3363, 3474, 3574, 3784
BstSFI CTRYAG 6 cut(s) 52, 357, 1500, 3429, 3510, 3579
BstSLI GKGCMC 1 cut(s) 3901
BstUI CGCG 2 cut(s) 84, 2175
BstV2I GAAGAC 4 cut(s) 1876, 3275, 3622, 3708
BstX2I RGATCY 3 cut(s) 940, 1034, 2922
BstXI CCANNNNNNTGG 2 cut(s) 704, 2755
BstYI RGATCY 3 cut(s) 940, 1034, 2922
Bsu15I ATCGAT 4 cut(s) 36, 1458, 1782, 3314
BsuI GTATCC 1 cut(s) 3770
BsuTUI ATCGAT 4 cut(s) 36, 1458, 1782, 3314
BtgZI GCGATG 2 cut(s) 79, 180
BtsI GCAGTG 3 cut(s) 846, 1012, 2044
BtsIMutI CAGTG 8 cut(s) 141, 432, 589, 846, 1012, 2044, 2494, 2669
BveI ACCTGC 2 cut(s) 460, 1285
Cac8I GCNNGC 9 cut(s) 298, 480, 508, 1146, 1792, 2171, 2307, 2950, 3216
CaiI CAGNNNCTG 1 cut(s) 3347
CciI TCATGA 2 cut(s) 2878, 3753
CfoI GCGC 2 cut(s) 2175, 3384
Cfr10I RCCGGY 2 cut(s) 22, 296
Cfr13I GGNCC 7 cut(s) 20, 299, 1186, 1929, 2426, 2841, 3344
ClaI ATCGAT 4 cut(s) 36, 1458, 1782, 3314
CseI GACGC 4 cut(s) 49, 73, 130, 2352
CsiI ACCWGGT 2 cut(s) 180, 3340
Csp6I GTAC 9 cut(s) 449, 1010, 1430, 2026, 2042, 2254, 2464, 3301, 3479
CviQI GTAC 9 cut(s) 449, 1010, 1430, 2026, 2042, 2254, 2464, 3301, 3479
DraI TTTAAA 1 cut(s) 4021
DrdI GACNNNNNNGTC 2 cut(s) 1213, 2939
DseDI GACNNNNNNGTC 2 cut(s) 1213, 2939
EaeI YGGCCR 4 cut(s) 171, 2992, 3676, 3861
Eam1104I CTCTTC 3 cut(s) 648, 921, 3087
EarI CTCTTC 3 cut(s) 648, 921, 3087
Ecl136II GAGCTC 2 cut(s) 794, 1612
Eco130I CCWWGG 3 cut(s) 1218, 1421, 2377
Eco24I GRGCYC 3 cut(s) 796, 1614, 2392
Eco47I GGWCC 5 cut(s) 20, 1186, 1929, 2841, 3344
Eco53kI GAGCTC 2 cut(s) 794, 1612
Eco57I CTGAAG 2 cut(s) 2693, 3720
EcoICRI GAGCTC 2 cut(s) 794, 1612
EcoO109I RGGNCCY 2 cut(s) 1186, 3344
EcoRI GAATTC 2 cut(s) 1407, 3636
EcoRII CCWGG 8 cut(s) 180, 301, 1262, 1338, 1641, 3340, 3649, 3892
EcoT14I CCWWGG 3 cut(s) 1218, 1421, 2377
EcoT22I ATGCAT 2 cut(s) 2408, 3361
EcoT38I GRGCYC 3 cut(s) 796, 1614, 2392
ErhI CCWWGG 3 cut(s) 1218, 1421, 2377
FalI AAGNNNNNCTT 4 cut(s) 587, 619, 1960, 1992
FaqI GGGAC 3 cut(s) 33, 433, 3457
FauI CCCGC 1 cut(s) 1799
FriOI GRGCYC 3 cut(s) 796, 1614, 2392
FspBI CTAG 4 cut(s) 1041, 2343, 3089, 3839
GlaI GCGC 2 cut(s) 2174, 3383
GsaI CCCAGC 2 cut(s) 498, 3500
GsuI CTGGAG 2 cut(s) 708, 1664
HaeII RGCGCY 1 cut(s) 3385
HapII CCGG 7 cut(s) 23, 297, 1236, 1326, 1404, 2250, 3925
HgaI GACGC 4 cut(s) 49, 73, 130, 2352
HhaI GCGC 2 cut(s) 2175, 3384
Hin1I GRCGYC 1 cut(s) 122
Hin6I GCGC 2 cut(s) 2173, 3382
HinP1I GCGC 2 cut(s) 2173, 3382
HincII GTYRAC 4 cut(s) 202, 2152, 2458, 2521
HindII GTYRAC 4 cut(s) 202, 2152, 2458, 2521
HindIII AAGCTT 2 cut(s) 1974, 2583
HpaII CCGG 7 cut(s) 23, 297, 1236, 1326, 1404, 2250, 3925
Hpy99I CGWCG 4 cut(s) 65, 89, 124, 2368
HpyCH4IV ACGT 4 cut(s) 132, 1673, 2466, 2679
HpyF10VI GCNNNNNNNGC 9 cut(s) 554, 1066, 1133, 1145, 1856, 1999, 2498, 3464, 3717
HpySE526I ACGT 4 cut(s) 132, 1673, 2466, 2679
Hsp92I GRCGYC 1 cut(s) 122
HspAI GCGC 2 cut(s) 2173, 3382
Kpn2I TCCGGA 1 cut(s) 1403
KroI GCCGGC 1 cut(s) 296
KroNI GCCGGC 1 cut(s) 298
LguI GCTCTTC 1 cut(s) 921
LmnI GCTCC 8 cut(s) 525, 961, 1133, 1291, 1609, 3532, 3646, 3829
MabI ACCWGGT 2 cut(s) 180, 3340
MaeI CTAG 4 cut(s) 1041, 2343, 3089, 3839
MaeII ACGT 4 cut(s) 132, 1673, 2466, 2679
MaeIII GTNAC 8 cut(s) 245, 305, 325, 442, 1204, 2137, 2851, 3061
MbiI CCGCTC 1 cut(s) 154
MfeI CAATTG 2 cut(s) 651, 1061
MflI RGATCY 3 cut(s) 940, 1034, 2922
MhlI GDGCHC 8 cut(s) 522, 796, 1257, 1614, 2311, 2392, 3354, 3901
MlsI TGGCCA 2 cut(s) 2994, 3863
MluNI TGGCCA 2 cut(s) 2994, 3863
MlyI GAGTC 8 cut(s) 242, 461, 829, 866, 1201, 1695, 1733, 3197
MmeI TCCRAC 4 cut(s) 43, 1304, 2533, 3641
Mox20I TGGCCA 2 cut(s) 2994, 3863
Mph1103I ATGCAT 2 cut(s) 2408, 3361
MroI TCCGGA 1 cut(s) 1403
MroNI GCCGGC 1 cut(s) 296
MroXI GAANNNNTTC 2 cut(s) 1673, 3712
MscI TGGCCA 2 cut(s) 2994, 3863
MseI TTAA 9 cut(s) 227, 2682, 2715, 2892, 3396, 3417, 3642, 3915, 4020
MslI CAYNNNNRTG 4 cut(s) 702, 2287, 2465, 2487
Msp20I TGGCCA 2 cut(s) 2994, 3863
MspA1I CMGCKG 3 cut(s) 780, 1139, 3584
MspCI CTTAAG 1 cut(s) 3641
MspI CCGG 7 cut(s) 23, 297, 1236, 1326, 1404, 2250, 3925
MunI CAATTG 2 cut(s) 651, 1061
Mva1269I GAATGC 4 cut(s) 439, 1470, 1642, 3547
MvaI CCWGG 8 cut(s) 182, 303, 1264, 1340, 1643, 3342, 3651, 3894
MvnI CGCG 2 cut(s) 84, 2175
MwoI GCNNNNNNNGC 9 cut(s) 554, 1066, 1133, 1145, 1856, 1999, 2498, 3464, 3717
NaeI GCCGGC 1 cut(s) 298
NciI CCSGG 3 cut(s) 1326, 2251, 3926
NgoMIV GCCGGC 1 cut(s) 296
NlaIV GGNNCC 7 cut(s) 21, 628, 963, 3226, 3534, 3648, 3900
NmeAIII GCCGAG 2 cut(s) 1839, 2043
NmuCI GTSAC 3 cut(s) 245, 305, 1204
NsiI ATGCAT 2 cut(s) 2408, 3361
NspI RCATGY 6 cut(s) 2158, 2464, 3363, 3474, 3574, 3784
NspV TTCGAA 1 cut(s) 924
PagI TCATGA 2 cut(s) 2878, 3753
PciI ACATGT 3 cut(s) 2154, 2460, 3570
PciSI GCTCTTC 1 cut(s) 921
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 2302
PctI GAATGC 4 cut(s) 439, 1470, 1642, 3547
PdiI GCCGGC 1 cut(s) 298
PdmI GAANNNNTTC 2 cut(s) 1673, 3712
PflFI GACNNNGTC 2 cut(s) 83, 124
PflMI CCANNNNNTGG 1 cut(s) 1926
Ple19I CGATCG 1 cut(s) 30
PleI GAGTC 8 cut(s) 242, 461, 829, 866, 1201, 1694, 1733, 3196
PpsI GAGTC 8 cut(s) 242, 461, 829, 866, 1201, 1694, 1733, 3196
Ppu21I YACGTR 1 cut(s) 2467
PpuMI RGGWCCY 2 cut(s) 1186, 3344
PscI ACATGT 3 cut(s) 2154, 2460, 3570
PsiI TTATAA 1 cut(s) 1659
Psp124BI GAGCTC 2 cut(s) 796, 1614
Psp5II RGGWCCY 2 cut(s) 1186, 3344
Psp6I CCWGG 8 cut(s) 180, 301, 1262, 1338, 1641, 3340, 3649, 3892
PspFI CCCAGC 2 cut(s) 494, 3496
PspGI CCWGG 8 cut(s) 180, 301, 1262, 1338, 1641, 3340, 3649, 3892
PspN4I GGNNCC 7 cut(s) 21, 628, 963, 3226, 3534, 3648, 3900
PspPI GGNCC 7 cut(s) 20, 299, 1186, 1929, 2426, 2841, 3344
PspPPI RGGWCCY 2 cut(s) 1186, 3344
PstI CTGCAG 3 cut(s) 361, 3514, 3583
PstNI CAGNNNCTG 1 cut(s) 3347
PsuI RGATCY 3 cut(s) 940, 1034, 2922
PsyI GACNNNGTC 2 cut(s) 83, 124
PvuI CGATCG 1 cut(s) 30
PvuII CAGCTG 2 cut(s) 1139, 3584
RsaI GTAC 9 cut(s) 450, 1011, 1431, 2027, 2043, 2255, 2465, 3302, 3480
RsaNI GTAC 9 cut(s) 449, 1010, 1430, 2026, 2042, 2254, 2464, 3301, 3479
RseI CAYNNNNRTG 4 cut(s) 702, 2287, 2465, 2487
SacI GAGCTC 2 cut(s) 796, 1614
SapI GCTCTTC 1 cut(s) 921
SaqAI TTAA 9 cut(s) 227, 2682, 2715, 2892, 3396, 3417, 3642, 3915, 4020
Sau96I GGNCC 7 cut(s) 20, 299, 1186, 1929, 2426, 2841, 3344
ScaI AGTACT 1 cut(s) 3302
SchI GAGTC 8 cut(s) 242, 461, 829, 866, 1201, 1695, 1733, 3197
SduI GDGCHC 8 cut(s) 522, 796, 1257, 1614, 2311, 2392, 3354, 3901
SexAI ACCWGGT 2 cut(s) 180, 3340
SfcI CTRYAG 6 cut(s) 52, 357, 1500, 3429, 3510, 3579
SfuI TTCGAA 1 cut(s) 924
SinI GGWCC 5 cut(s) 20, 1186, 1929, 2841, 3344
SmiMI CAYNNNNRTG 4 cut(s) 702, 2287, 2465, 2487
SmlI CTYRAG 3 cut(s) 1613, 2798, 3641
SmoI CTYRAG 3 cut(s) 1613, 2798, 3641
SspMI CTAG 4 cut(s) 1041, 2343, 3089, 3839
SstI GAGCTC 2 cut(s) 796, 1614
StyI CCWWGG 3 cut(s) 1218, 1421, 2377
TaiI ACGT 4 cut(s) 135, 1676, 2469, 2682
TatI WGTACW 5 cut(s) 1009, 2025, 2041, 3300, 3478
TauI GCSGC 2 cut(s) 173, 3605
Tru1I TTAA 9 cut(s) 227, 2682, 2715, 2892, 3396, 3417, 3642, 3915, 4020
Tru9I TTAA 9 cut(s) 227, 2682, 2715, 2892, 3396, 3417, 3642, 3915, 4020
TscAI CASTG 8 cut(s) 148, 432, 589, 853, 1012, 2044, 2494, 2676
TseFI GTSAC 3 cut(s) 245, 305, 1204
Tsp45I GTSAC 3 cut(s) 245, 305, 1204
TspGWI ACGGA 1 cut(s) 512
TspRI CASTG 8 cut(s) 148, 432, 589, 853, 1012, 2044, 2494, 2676
Tth111I GACNNNGTC 2 cut(s) 83, 124
Van91I CCANNNNNTGG 1 cut(s) 1926
Vha464I CTTAAG 1 cut(s) 3641
VpaK11BI GGWCC 5 cut(s) 20, 1186, 1929, 2841, 3344
XapI RAATTY 6 cut(s) 1407, 3000, 3010, 3197, 3636, 3793
XbaI TCTAGA 1 cut(s) 3088
XceI RCATGY 6 cut(s) 2158, 2464, 3363, 3474, 3574, 3784
XmnI GAANNNNTTC 2 cut(s) 1673, 3712
XspI CTAG 4 cut(s) 1041, 2343, 3089, 3839
ZrmI AGTACT 1 cut(s) 3302
Zsp2I ATGCAT 2 cut(s) 2408, 3361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.