Rorug07G0287400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0016644
Physical Location & Seq
Forward (+)
27972607 .. 27974647
2041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0287400.1

Sequence Viewer

Length: 1521 bp
ATGATGAATCAAGCCATGCTTGCAAAAGTTAGCTGGAGATTGCTGCAAAATGATAATGGTTTATGGAGTAAAGTTCTTCACCATAAATATATAAAGCAGAAGTGTTTCCTAGATAACAACTATAAAGCTCCTCCAGATTGCTCTAGTACTTGGCGGAGTATTGTCTTTGGAGCTCAACTCCTCAAAATTGGTGTTATGTGGCGCATTGGTGATGGGAATTCGGTCAAGTTTTGGACTGACAAATGGCTCCCTGGAGGTACTCTTTTGGAATATAGTGATAATCAAAATAATCTTGATTTGCAGCTCAAAGTTAATGATGTTTGGTCTAACTCGGGTTGGAATATTGATTTTCTTCACTCCCATTTTGAGTTTGAAATTGTCAACCAAATTAATAGCATTCCGTTTGGTTTTCCTGGAAGTGGTCCTGATAAATTGATTTGGGGTGCTTCGTCAAATGGCCAGTTTAGTGTTAAATCTGCTTATGCCACCTTGGTAAATGAATTTGAGTTTCTTCCTTATACTTGGCAGTTTATTTGGAGACTTGCTATTCCTCCCAAGATGAAAACGTTTGCTTGGCTATTGTCCCATGGCAAAGTGCTGACCAATATGGAAAGGGTTAAAAGAAGGTTGACTCTTGATCTCTTGTGTCCTATTTGTCACCAACATCCTGAAAGTATCCTCCATTTATTTAGAGACTGTCCTAGAGCTTCTGAAATTTGGAACAGGATTATTTGCATTGAGAAGATTCAGAGAGCTAGGACTCTTAATTGGGTCAGTTGGTTTAAGGCCAATGCTCTGTGCAATGAAGACTGCTATAATGGCTTAAAATGGAGTAGTGTTTTTCTTTCCACATGCTGGTATATTTGGAAGTGGAGAAACAAAAGTATTTTTGATACTGACTTCATGATGCCCTTTAACCCTACTAAAATCATAATTGATGCAGCTACTGATTGGTTCAAAGCTCAATGTGTTACTGCTGCTCTTAATCATAGTAACACTATTGTGGTGCAGTGGTCTAAACCTGACTTGGATTGGCTCAAGTTAAATGTGGATGGAGCTAGAAACAGATCTGGTAATATTGGAGCAGGTGGTGTGCTCAGAGACCACCAGAGAAATTGGATTATGGGTTTTTATGCCAATCTTGGTACTAGTTCAGTTATCGTTGCTGAAGCATGGGGCCTCCTTCTTAGACTTAAGATGGCCTCCCAACAAACAAGGGGCAAGATTGTAGTTGAATGTGATTCAGAGGTGCTTGTTAATCTTATGGCTAATGGGGTTGATGATCTTCACCCTCTCAAACCTATTCTGAGCAGTTGTAGAATTCTCATGGAACTTCAGCAATGCACTATTCGCCATTGTTACCGTGAAATGAATATGGTCGCGGATGGACTCTCTAAGTGTGGGTTGGCGACTAACATTGGGATTCATTTCCTTGAATCTCCTCCTCCACAAGTCATTGAAGATTACCTTGATGATTTGTGTGCAGTTACCAGAAATAGGAATGTCTCAGTTATTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR

Protein Analysis

506

Amino Acids

58.1

Weight (kDa)

8.66

Isoelectric Point (pI)

32.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 155 - 240 1.3e-19 zinc-binding in reverse transcriptase
RVT_3 PF13456 349 - 466 1e-18 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016644)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61170
fragaria_vesca FvH4_5g34470
malus_domestica MD07G1126900.v1.1
prunus_persica Prupe.2G157100_v2.0.a1
pyrus_communis pycom07g12240
rosa_chinensis RchiOBHm_Chr7g0235091
rosa_multiflora Rmu_sc0002239.1_g000010
rosa_roxburghii Rroxscaffold_3G00226310
rosa_rugosa Rorug07G0287300 Rorug07G0287400
rosa_samantha Rh7AG442400 Rh7BG415000 Rh7CG463300
rosa_wichuraiana Rw7G036780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1076
Acc36I ACCTGC 1 cut(s) 1076
AccB7I CCANNNNNTGG 1 cut(s) 855
AccII CGCG 1 cut(s) 1382
AciI CCGC 2 cut(s) 154, 1382
AclI AACGTT 1 cut(s) 566
AcoI YGGCCR 1 cut(s) 457
AcsI RAATTY 4 cut(s) 217, 500, 714, 1320
AcuI CTGAAG 2 cut(s) 1188, 1319
AfaI GTAC 3 cut(s) 148, 259, 1147
AfiI CCNNNNNNNGG 3 cut(s) 419, 855, 1497
AflII CTTAAG 1 cut(s) 1193
AgsI TTSAA 5 cut(s) 374, 958, 1235, 1436, 1460
AhlI ACTAGT 1 cut(s) 1148
AjnI CCWGG 2 cut(s) 250, 412
AleI CACNNNNGTG 1 cut(s) 1001
AluBI AGCT 9 cut(s) 33, 128, 173, 304, 707, 755, 944, 962, 1058
AluI AGCT 9 cut(s) 33, 128, 173, 304, 707, 755, 944, 962, 1058
Alw21I GWGCWC 2 cut(s) 175, 1098
Alw26I GTCTC 4 cut(s) 532, 687, 1095, 1510
AlwNI CAGNNNCTG 1 cut(s) 947
Ama87I CYCGRG 1 cut(s) 331
AoxI GGCC 4 cut(s) 457, 786, 1177, 1200
ApeKI GCWGC 4 cut(s) 43, 301, 941, 977
ApoI RAATTY 4 cut(s) 217, 500, 714, 1320
AseI ATTAAT 1 cut(s) 390
Asp700I GAANNNNTTC 1 cut(s) 104
AspLEI GCGC 1 cut(s) 204
AspS9I GGNCC 2 cut(s) 422, 1177
AsuHPI GGTGA 4 cut(s) 71, 221, 650, 1280
AvaI CYCGRG 1 cut(s) 331
AvaII GGWCC 1 cut(s) 422
BalI TGGCCA 1 cut(s) 459
BanII GRGCYC 1 cut(s) 175
BbsI GAAGAC 1 cut(s) 813
Bbv12I GWGCWC 2 cut(s) 175, 1098
BbvI GCAGC 4 cut(s) 30, 313, 953, 964
BccI CCATC 4 cut(s) 206, 1046, 1192, 1379
BciT130I CCWGG 2 cut(s) 252, 414
BciVI GTATCC 1 cut(s) 686
BcoDI GTCTC 4 cut(s) 532, 687, 1095, 1510
BcuI ACTAGT 1 cut(s) 1148
BfaI CTAG 6 cut(s) 110, 144, 702, 756, 1059, 1149
BfrI CTTAAG 1 cut(s) 1193
BfuAI ACCTGC 1 cut(s) 1076
BfuI GTATCC 1 cut(s) 686
BglII AGATCT 1 cut(s) 1067
BisI GCNGC 4 cut(s) 44, 302, 942, 978
BlsI GCNGC 4 cut(s) 45, 303, 943, 979
BmcAI AGTACT 1 cut(s) 148
Bme1390I CCNGG 2 cut(s) 252, 414
Bme18I GGWCC 1 cut(s) 422
BmeT110I CYCGRG 1 cut(s) 331
BmgT120I GGNCC 2 cut(s) 422, 1177
BmiI GGNNCC 2 cut(s) 248, 1178
BmrFI CCNGG 2 cut(s) 252, 414
BmsI GCATC 2 cut(s) 897, 928
BpiI GAAGAC 1 cut(s) 813
BplI GAGNNNNNCTC 2 cut(s) 162, 194
BpmI CTGGAG 3 cut(s) 55, 117, 273
BpuEI CTTGAG 1 cut(s) 1022
BsaI GGTCTC 1 cut(s) 1095
BsaJI CCNNGG 3 cut(s) 250, 489, 586
Bsc4I CCNNNNNNNGG 3 cut(s) 419, 855, 1497
Bse1I ACTGG 1 cut(s) 460
Bse3DI GCAATG 2 cut(s) 808, 1346
BseBI CCWGG 2 cut(s) 252, 414
BseDI CCNNGG 3 cut(s) 250, 489, 586
BseGI GGATG 3 cut(s) 664, 1057, 1390
BseLI CCNNNNNNNGG 3 cut(s) 419, 855, 1497
BseMI GCAATG 2 cut(s) 808, 1346
BseMII CTCAG 3 cut(s) 1111, 1298, 1521
BseNI ACTGG 1 cut(s) 460
BseRI GAGGAG 4 cut(s) 120, 170, 1431, 1434
BseXI GCAGC 4 cut(s) 30, 313, 953, 964
BsgI GTGCAG 2 cut(s) 1028, 1503
Bsh1236I CGCG 1 cut(s) 1382
BshFI GGCC 4 cut(s) 459, 788, 1179, 1202
BsiHKAI GWGCWC 2 cut(s) 175, 1098
BsiHKCI CYCGRG 1 cut(s) 331
BslFI GGGAC 1 cut(s) 568
BslI CCNNNNNNNGG 3 cut(s) 419, 855, 1497
BsmAI GTCTC 4 cut(s) 532, 687, 1095, 1510
BsmFI GGGAC 1 cut(s) 568
BsmI GAATGC 1 cut(s) 396
BsnI GGCC 4 cut(s) 459, 788, 1179, 1202
Bso31I GGTCTC 1 cut(s) 1095
BsoBI CYCGRG 1 cut(s) 331
Bsp1286I GDGCHC 2 cut(s) 175, 1098
Bsp143I GATC 3 cut(s) 637, 1067, 1282
Bsp19I CCATGG 1 cut(s) 586
BspACI CCGC 2 cut(s) 154, 1382
BspANI GGCC 4 cut(s) 459, 788, 1179, 1202
BspCNI CTCAG 3 cut(s) 1110, 1299, 1520
BspFNI CGCG 1 cut(s) 1382
BspHI TCATGA 1 cut(s) 903
BspLI GGNNCC 2 cut(s) 248, 1178
BspMI ACCTGC 1 cut(s) 1076
BspTI CTTAAG 1 cut(s) 1193
BspTNI GGTCTC 1 cut(s) 1095
BsrDI GCAATG 2 cut(s) 808, 1346
BsrI ACTGG 1 cut(s) 460
BssECI CCNNGG 3 cut(s) 250, 489, 586
BssMI GATC 3 cut(s) 637, 1067, 1282
BssT1I CCWWGG 2 cut(s) 489, 586
Bst2UI CCWGG 2 cut(s) 252, 414
Bst4CI ACNGT 2 cut(s) 698, 1364
BstAFI CTTAAG 1 cut(s) 1193
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 5 cut(s) 1097, 1187, 1307, 1395, 1507
BstDSI CCRYGG 1 cut(s) 586
BstF5I GGATG 3 cut(s) 664, 1057, 1390
BstFNI CGCG 1 cut(s) 1382
BstHHI GCGC 1 cut(s) 204
BstKTI GATC 3 cut(s) 640, 1070, 1285
BstMAI GTCTC 4 cut(s) 532, 687, 1095, 1510
BstMBI GATC 3 cut(s) 637, 1067, 1282
BstMWI GCNNNNNNNGC 3 cut(s) 20, 819, 1350
BstNI CCWGG 2 cut(s) 252, 414
BstNSI RCATGY 1 cut(s) 855
BstSCI CCNGG 2 cut(s) 250, 412
BstUI CGCG 1 cut(s) 1382
BstV1I GCAGC 4 cut(s) 30, 313, 953, 964
BstV2I GAAGAC 1 cut(s) 813
BstX2I RGATCY 1 cut(s) 1067
BstYI RGATCY 1 cut(s) 1067
BsuI GTATCC 1 cut(s) 686
BsuRI GGCC 4 cut(s) 459, 788, 1179, 1202
BtgI CCRYGG 1 cut(s) 586
BtsCI GGATG 3 cut(s) 664, 1057, 1390
BtsI GCAGTG 1 cut(s) 1016
BtsIMutI CAGTG 1 cut(s) 1016
BveI ACCTGC 1 cut(s) 1076
Cac8I GCNNGC 1 cut(s) 21
CaiI CAGNNNCTG 1 cut(s) 947
CciI TCATGA 1 cut(s) 903
CfoI GCGC 1 cut(s) 204
Cfr13I GGNCC 2 cut(s) 422, 1177
Csp6I GTAC 3 cut(s) 147, 258, 1146
CviAII CATG 6 cut(s) 16, 587, 852, 904, 1173, 1327
CviQI GTAC 3 cut(s) 147, 258, 1146
DdeI CTNAG 5 cut(s) 1097, 1187, 1307, 1395, 1507
DpnI GATC 3 cut(s) 639, 1069, 1284
DpnII GATC 3 cut(s) 637, 1067, 1282
EaeI YGGCCR 1 cut(s) 457
EciI GGCGGA 1 cut(s) 169
Ecl136II GAGCTC 1 cut(s) 173
Eco130I CCWWGG 2 cut(s) 489, 586
Eco24I GRGCYC 1 cut(s) 175
Eco31I GGTCTC 1 cut(s) 1095
Eco47I GGWCC 1 cut(s) 422
Eco53kI GAGCTC 1 cut(s) 173
Eco57I CTGAAG 2 cut(s) 1188, 1319
Eco88I CYCGRG 1 cut(s) 331
EcoICRI GAGCTC 1 cut(s) 173
EcoO109I RGGNCCY 1 cut(s) 1177
EcoRI GAATTC 2 cut(s) 217, 1320
EcoRII CCWGG 2 cut(s) 250, 412
EcoT14I CCWWGG 2 cut(s) 489, 586
EcoT38I GRGCYC 1 cut(s) 175
ErhI CCWWGG 2 cut(s) 489, 586
FaeI CATG 6 cut(s) 19, 590, 855, 907, 1176, 1330
FalI AAGNNNNNCTT 3 cut(s) 35, 1452, 1484
FaqI GGGAC 1 cut(s) 568
FatI CATG 6 cut(s) 15, 586, 851, 903, 1172, 1326
Fnu4HI GCNGC 4 cut(s) 44, 302, 942, 978
FokI GGATG 3 cut(s) 651, 1064, 1397
FriOI GRGCYC 1 cut(s) 175
Fsp4HI GCNGC 4 cut(s) 44, 302, 942, 978
FspBI CTAG 6 cut(s) 110, 144, 702, 756, 1059, 1149
GlaI GCGC 1 cut(s) 203
GluI GCNGC 4 cut(s) 44, 302, 942, 978
GsuI CTGGAG 3 cut(s) 55, 117, 273
HaeIII GGCC 4 cut(s) 459, 788, 1179, 1202
HhaI GCGC 1 cut(s) 204
Hin1II CATG 6 cut(s) 19, 590, 855, 907, 1176, 1330
Hin6I GCGC 1 cut(s) 202
HinP1I GCGC 1 cut(s) 202
HincII GTYRAC 2 cut(s) 382, 630
HindII GTYRAC 2 cut(s) 382, 630
HinfI GANTC 8 cut(s) 7, 631, 745, 760, 1241, 1389, 1423, 1436
HphI GGTGA 4 cut(s) 71, 221, 650, 1280
Hpy166II GTNNAC 2 cut(s) 382, 630
Hpy188I TCNGA 5 cut(s) 712, 750, 1100, 1246, 1308
Hpy188III TCNNGA 6 cut(s) 134, 293, 425, 635, 668, 904
Hpy8I GTNNAC 2 cut(s) 382, 630
HpyAV CCTTC 2 cut(s) 618, 1193
HpyCH4III ACNGT 2 cut(s) 698, 1364
HpyCH4IV ACGT 1 cut(s) 566
HpyCH4V TGCA 9 cut(s) 23, 46, 301, 735, 801, 941, 1009, 1344, 1484
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 819, 1350
HpyF3I CTNAG 5 cut(s) 1097, 1187, 1307, 1395, 1507
HpySE526I ACGT 1 cut(s) 566
Hsp92II CATG 6 cut(s) 19, 590, 855, 907, 1176, 1330
HspAI GCGC 1 cut(s) 202
Kzo9I GATC 3 cut(s) 637, 1067, 1282
LmnI GCTCC 5 cut(s) 133, 170, 252, 1055, 1082
Lsp1109I GCAGC 4 cut(s) 30, 313, 953, 964
LweI GCATC 2 cut(s) 897, 928
MaeI CTAG 6 cut(s) 110, 144, 702, 756, 1059, 1149
MaeII ACGT 1 cut(s) 566
MaeIII GTNAC 5 cut(s) 656, 970, 992, 1358, 1486
MalI GATC 3 cut(s) 639, 1069, 1284
MboI GATC 3 cut(s) 637, 1067, 1282
MboII GAAGA 7 cut(s) 68, 344, 503, 754, 818, 1277, 1472
MflI RGATCY 1 cut(s) 1067
MhlI GDGCHC 2 cut(s) 175, 1098
MlsI TGGCCA 1 cut(s) 459
MluNI TGGCCA 1 cut(s) 459
MlyI GAGTC 3 cut(s) 625, 754, 1383
MmeI TCCRAC 1 cut(s) 317
Mox20I TGGCCA 1 cut(s) 459
MroXI GAANNNNTTC 1 cut(s) 104
MscI TGGCCA 1 cut(s) 459
MslI CAYNNNNRTG 1 cut(s) 1001
Msp20I TGGCCA 1 cut(s) 459
MspCI CTTAAG 1 cut(s) 1193
MspR9I CCNGG 2 cut(s) 252, 414
Mva1269I GAATGC 1 cut(s) 396
MvaI CCWGG 2 cut(s) 252, 414
MvnI CGCG 1 cut(s) 1382
MwoI GCNNNNNNNGC 3 cut(s) 20, 819, 1350
NcoI CCATGG 1 cut(s) 586
NdeII GATC 3 cut(s) 637, 1067, 1282
NlaIII CATG 6 cut(s) 19, 590, 855, 907, 1176, 1330
NlaIV GGNNCC 2 cut(s) 248, 1178
NmuCI GTSAC 1 cut(s) 656
NspI RCATGY 1 cut(s) 855
OliI CACNNNNGTG 1 cut(s) 1001
PagI TCATGA 1 cut(s) 903
PaqCI CACCTGC 1 cut(s) 1076
PctI GAATGC 1 cut(s) 396
PdmI GAANNNNTTC 1 cut(s) 104
PfeI GAWTC 5 cut(s) 7, 745, 1241, 1423, 1436
PflMI CCANNNNNTGG 1 cut(s) 855
PfoI TCCNGGA 1 cut(s) 412
PkrI GCNGC 4 cut(s) 45, 303, 943, 979
PleI GAGTC 3 cut(s) 625, 754, 1383
PpsI GAGTC 3 cut(s) 625, 754, 1383
PshBI ATTAAT 1 cut(s) 390
Psp124BI GAGCTC 1 cut(s) 175
Psp1406I AACGTT 1 cut(s) 566
Psp6I CCWGG 2 cut(s) 250, 412
PspGI CCWGG 2 cut(s) 250, 412
PspN4I GGNNCC 2 cut(s) 248, 1178
PspPI GGNCC 2 cut(s) 422, 1177
PstNI CAGNNNCTG 1 cut(s) 947
PsuI RGATCY 1 cut(s) 1067
RsaI GTAC 3 cut(s) 148, 259, 1147
RsaNI GTAC 3 cut(s) 147, 258, 1146
RseI CAYNNNNRTG 1 cut(s) 1001
SacI GAGCTC 1 cut(s) 175
SatI GCNGC 4 cut(s) 44, 302, 942, 978
Sau3AI GATC 3 cut(s) 637, 1067, 1282
Sau96I GGNCC 2 cut(s) 422, 1177
ScaI AGTACT 1 cut(s) 148
SchI GAGTC 3 cut(s) 625, 754, 1383
ScrFI CCNGG 2 cut(s) 252, 414
SduI GDGCHC 2 cut(s) 175, 1098
SfaNI GCATC 2 cut(s) 897, 928
SinI GGWCC 1 cut(s) 422
SmiMI CAYNNNNRTG 1 cut(s) 1001
SmlI CTYRAG 2 cut(s) 1037, 1193
SmoI CTYRAG 2 cut(s) 1037, 1193
SpeI ACTAGT 1 cut(s) 1148
SsiI CCGC 2 cut(s) 154, 1382
SspI AATATT 2 cut(s) 343, 1078
SspMI CTAG 6 cut(s) 110, 144, 702, 756, 1059, 1149
SstI GAGCTC 1 cut(s) 175
StyD4I CCNGG 2 cut(s) 250, 412
StyI CCWWGG 2 cut(s) 489, 586
TaaI ACNGT 2 cut(s) 698, 1364
TaiI ACGT 1 cut(s) 569
TaqII GACCGA 1 cut(s) 211
TatI WGTACW 1 cut(s) 146
TfiI GAWTC 5 cut(s) 7, 745, 1241, 1423, 1436
TscAI CASTG 1 cut(s) 1016
TseFI GTSAC 1 cut(s) 656
TseI GCWGC 4 cut(s) 43, 301, 941, 977
Tsp45I GTSAC 1 cut(s) 656
TspDTI ATGAA 7 cut(s) 20, 513, 575, 819, 892, 1385, 1415
TspGWI ACGGA 1 cut(s) 390
TspRI CASTG 1 cut(s) 1016
Van91I CCANNNNNTGG 1 cut(s) 855
Vha464I CTTAAG 1 cut(s) 1193
VpaK11BI GGWCC 1 cut(s) 422
VspI ATTAAT 1 cut(s) 390
XapI RAATTY 4 cut(s) 217, 500, 714, 1320
XceI RCATGY 1 cut(s) 855
XmnI GAANNNNTTC 1 cut(s) 104
XspI CTAG 6 cut(s) 110, 144, 702, 756, 1059, 1149
ZrmI AGTACT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.