MD07G1198400.v1.1

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
27660059 .. 27663175
3117 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1198400.v1.1.491

Sequence Viewer

Length: 1191 bp
ATGGCTACCACCAAGCTCCTCCTCTCCCTTCTCCTCCTCGTCCAGCTCGCCGCCACAGCCTACTCCATCGGTGTAAACTACGGTACTCTCGGTGACAACCTCCCGCCACCAGCCAAAGTCGCCGACTTCATCAAAACCCAAACCAACATCGACGCTGTCAAAATCTTTGACACCAACCCCGACATCATCAAGGCCTTCGCCAACACCAACATCTCCTTGACGATTACCATCCCTAACGGAGACATCCCGAAACTCATAAAGCTACGCATCGCTCGCCGTTGGGTCGTTGATCATGTCAAGCCGTTTTACCCCGCAAGCAAAATCAAATACATTGCCATGGGCAACGAGGTGCTTCACTGGGGGGACGATGCTCTCAAGTCGAATCTCGTCCCTGCCATGAAGACCTTACACAACGCTTTGGTCCGCGAGGGGATCAAAGACGTCAAGGTCTCGACCCCTCACTCGCTCGGAATCATGTTGTCTTCCGACCCGCCCAGCATGGGCCGGTTTAGACCGGAGGTGATTCCAATCCTGACCCAAATGCTCCGATTCTGTCGCCAGACCAAGTCGCCTTTCATGGTTAACCCGTACCCATATTTCGGGTGGTCACCCGAAAAGGAGAGCTACGCTCTCTTTAGACCCAACAATGGTGTGCACGATAAATTCACTGGCAAGTTTTACACTAACATGTTCGATGGGTTGATGGACGCGGTTTACTCAGCTGCCAAGGCAATTGGGTTCGGTGATGTGAACTTGATCGCGGCCGAGACCGGTTGGCCTTCCGCTTGCGAGTTCCCAGTCTGCTCGGTTCAGAACGCTGTGGACTACAACGGTCACTTGATCAACCATATTGAGTCCGGGAGGGGTACGCCTTTGATGCCAAACCGGAAGTTCGAGACTTACATCTTTGCTCTGTTTAATGAAAACCAGAAACCTGGTCCAGCCGCGGAGAAGAACTTTGGGCTGTTCAAACCAGACATGACTCCGGTTTACAATGCTGGGGTTATGCGCAATCAACAGGGTGGTGCAACTCCTGGACCAACAATGCAAATTCCAACACGACCTTCTACACCAACTGGACCAACTACACCAGCTGCACCTAAACGCGGGAAAGAGGGAAAGCCCGCTGGATCAGCAAAATCAACACTAGCAAAGCCGGCAACACCCGCAGCAGGAGGCAAAAAGCAGTAA

Protein Analysis

397

Amino Acids

43.1

Weight (kDa)

9.58

Isoelectric Point (pI)

30.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 23 - 332 4.5e-80 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 446
AatII GACGTC 1 cut(s) 444
Acc16I TGCGCA 1 cut(s) 1010
AccII CGCG 5 cut(s) 426, 710, 761, 947, 1107
AclWI GGATC 2 cut(s) 440, 1138
AcoI YGGCCR 1 cut(s) 762
AcsI RAATTY 2 cut(s) 662, 1050
AcyI GRCGYC 1 cut(s) 441
AfaI GTAC 3 cut(s) 85, 590, 868
AfiI CCNNNNNNNGG 5 cut(s) 500, 599, 647, 1106, 1172
AflIII ACRYGT 1 cut(s) 687
AgeI ACCGGT 1 cut(s) 770
AgsI TTSAA 1 cut(s) 970
AjnI CCWGG 2 cut(s) 934, 1033
AjuI GAANNNNNNNTTGG 4 cut(s) 557, 589, 1048, 1080
AluBI AGCT 6 cut(s) 16, 46, 262, 624, 722, 1094
AluI AGCT 6 cut(s) 16, 46, 262, 624, 722, 1094
Alw21I GWGCWC 1 cut(s) 657
Alw26I GTCTC 4 cut(s) 234, 454, 761, 890
Alw44I GTGCAC 1 cut(s) 653
AlwI GGATC 2 cut(s) 440, 1138
AoxI GGCC 4 cut(s) 192, 502, 762, 776
ApaLI GTGCAC 1 cut(s) 653
ApeKI GCWGC 3 cut(s) 722, 1094, 1169
ApoI RAATTY 2 cut(s) 662, 1050
AsiGI ACCGGT 1 cut(s) 770
AspLEI GCGC 1 cut(s) 1011
AspS9I GGNCC 5 cut(s) 421, 502, 938, 1037, 1079
AsuC2I CCSGG 1 cut(s) 859
AsuHPI GGTGA 4 cut(s) 104, 532, 600, 755
AvaII GGWCC 4 cut(s) 421, 938, 1037, 1079
BaeGI GKGCMC 1 cut(s) 657
BbsI GAAGAC 2 cut(s) 407, 474
Bbv12I GWGCWC 1 cut(s) 657
BbvI GCAGC 3 cut(s) 709, 1081, 1181
BccI CCATC 4 cut(s) 74, 236, 689, 697
BceAI ACGGC 2 cut(s) 261, 286
BciT130I CCWGG 2 cut(s) 936, 1035
BclI TGATCA 2 cut(s) 289, 840
BcnI CCSGG 1 cut(s) 859
BcoDI GTCTC 4 cut(s) 234, 454, 761, 890
BfaI CTAG 1 cut(s) 1148
BisI GCNGC 6 cut(s) 51, 723, 762, 945, 1095, 1170
BlsI GCNGC 6 cut(s) 52, 724, 763, 946, 1096, 1171
Bme1390I CCNGG 3 cut(s) 859, 936, 1035
Bme18I GGWCC 4 cut(s) 421, 938, 1037, 1079
BmgT120I GGNCC 5 cut(s) 421, 502, 938, 1037, 1079
BmrFI CCNGG 3 cut(s) 859, 936, 1035
BmrI ACTGGG 2 cut(s) 367, 791
BmsI GCATC 3 cut(s) 276, 358, 867
BmuI ACTGGG 2 cut(s) 367, 791
BpiI GAAGAC 2 cut(s) 407, 474
BplI GAGNNNNNCTC 2 cut(s) 613, 645
BpuEI CTTGAG 1 cut(s) 359
BpuMI CCSGG 1 cut(s) 859
BsaBI GATNNNNATC 2 cut(s) 227, 527
BsaHI GRCGYC 1 cut(s) 441
BsaI GGTCTC 2 cut(s) 454, 761
BsaJI CCNNGG 3 cut(s) 336, 726, 945
BsaWI WCCGGW 4 cut(s) 514, 770, 885, 985
Bsc4I CCNNNNNNNGG 5 cut(s) 500, 599, 647, 1106, 1172
Bse118I RCCGGY 3 cut(s) 504, 770, 1156
Bse1I ACTGG 4 cut(s) 362, 673, 797, 1081
Bse3DI GCAATG 1 cut(s) 330
Bse8I GATNNNNATC 2 cut(s) 227, 527
BseBI CCWGG 2 cut(s) 936, 1035
BseDI CCNNGG 3 cut(s) 336, 726, 945
BseGI GGATG 2 cut(s) 228, 243
BseJI GATNNNNATC 2 cut(s) 227, 527
BseLI CCNNNNNNNGG 5 cut(s) 500, 599, 647, 1106, 1172
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 1 cut(s) 732
BseNI ACTGG 4 cut(s) 362, 673, 797, 1081
BseRI GAGGAG 4 cut(s) 8, 11, 23, 26
BseSI GKGCMC 1 cut(s) 657
BseX3I CGGCCG 1 cut(s) 762
BseXI GCAGC 3 cut(s) 709, 1081, 1181
BseYI CCCAGC 2 cut(s) 494, 998
BsgI GTGCAG 1 cut(s) 1080
Bsh1236I CGCG 5 cut(s) 426, 710, 761, 947, 1107
Bsh1285I CGRYCG 1 cut(s) 765
BshFI GGCC 4 cut(s) 194, 504, 764, 778
BshTI ACCGGT 1 cut(s) 770
BsiEI CGRYCG 1 cut(s) 765
BsiHKAI GWGCWC 1 cut(s) 657
BsiSI CCGG 7 cut(s) 505, 515, 771, 858, 886, 986, 1157
BslFI GGGAC 2 cut(s) 374, 377
BslI CCNNNNNNNGG 5 cut(s) 500, 599, 647, 1106, 1172
BsmAI GTCTC 4 cut(s) 234, 454, 761, 890
BsmFI GGGAC 2 cut(s) 374, 377
BsnI GGCC 4 cut(s) 194, 504, 764, 778
Bso31I GGTCTC 2 cut(s) 454, 761
Bsp1286I GDGCHC 1 cut(s) 657
Bsp143I GATC 5 cut(s) 289, 432, 756, 840, 1130
Bsp19I CCATGG 1 cut(s) 336
BspANI GGCC 4 cut(s) 194, 504, 764, 778
BspCNI CTCAG 1 cut(s) 731
BspFNI CGCG 5 cut(s) 426, 710, 761, 947, 1107
BspPI GGATC 2 cut(s) 440, 1138
BspTNI GGTCTC 2 cut(s) 454, 761
BsrDI GCAATG 1 cut(s) 330
BsrFI RCCGGY 3 cut(s) 504, 770, 1156
BsrI ACTGG 4 cut(s) 362, 673, 797, 1081
BssAI RCCGGY 3 cut(s) 504, 770, 1156
BssECI CCNNGG 3 cut(s) 336, 726, 945
BssMI GATC 5 cut(s) 289, 432, 756, 840, 1130
BssNI GRCGYC 1 cut(s) 441
BssT1I CCWWGG 2 cut(s) 336, 726
Bst2UI CCWGG 2 cut(s) 936, 1035
Bst4CI ACNGT 2 cut(s) 83, 833
BstACI GRCGYC 1 cut(s) 441
BstC8I GCNNGC 6 cut(s) 48, 274, 316, 787, 1125, 1158
BstDEI CTNAG 1 cut(s) 718
BstDSI CCRYGG 2 cut(s) 336, 945
BstEII GGTNACC 1 cut(s) 606
BstF5I GGATG 2 cut(s) 228, 243
BstFNI CGCG 5 cut(s) 426, 710, 761, 947, 1107
BstHHI GCGC 1 cut(s) 1011
BstKTI GATC 5 cut(s) 292, 435, 759, 843, 1133
BstMAI GTCTC 4 cut(s) 234, 454, 761, 890
BstMBI GATC 5 cut(s) 289, 432, 756, 840, 1130
BstMCI CGRYCG 1 cut(s) 765
BstMWI GCNNNNNNNGC 8 cut(s) 56, 119, 273, 728, 877, 1133, 1157, 1166
BstNI CCWGG 2 cut(s) 936, 1035
BstNSI RCATGY 1 cut(s) 691
BstPI GGTNACC 1 cut(s) 606
BstSCI CCNGG 3 cut(s) 857, 934, 1033
BstSLI GKGCMC 1 cut(s) 657
BstUI CGCG 5 cut(s) 426, 710, 761, 947, 1107
BstV1I GCAGC 3 cut(s) 709, 1081, 1181
BstV2I GAAGAC 2 cut(s) 407, 474
BstXI CCANNNNNNTGG 1 cut(s) 935
BstZI CGGCCG 1 cut(s) 762
BsuRI GGCC 4 cut(s) 194, 504, 764, 778
BtgI CCRYGG 2 cut(s) 336, 945
BtgZI GCGATG 1 cut(s) 253
BtsCI GGATG 2 cut(s) 228, 243
BtsIMutI CAGTG 2 cut(s) 355, 666
Cac8I GCNNGC 6 cut(s) 48, 274, 316, 787, 1125, 1158
CfoI GCGC 1 cut(s) 1011
Cfr10I RCCGGY 3 cut(s) 504, 770, 1156
Cfr13I GGNCC 5 cut(s) 421, 502, 938, 1037, 1079
Cfr42I CCGCGG 1 cut(s) 948
CseI GACGC 2 cut(s) 161, 716
CsiI ACCWGGT 1 cut(s) 934
Csp6I GTAC 3 cut(s) 84, 589, 867
CspAI ACCGGT 1 cut(s) 770
CviAII CATG 8 cut(s) 293, 337, 397, 475, 499, 577, 688, 979
CviQI GTAC 3 cut(s) 84, 589, 867
DdeI CTNAG 1 cut(s) 718
DpnI GATC 5 cut(s) 291, 434, 758, 842, 1132
DpnII GATC 5 cut(s) 289, 432, 756, 840, 1130
DrdI GACNNNNNNGTC 1 cut(s) 446
DseDI GACNNNNNNGTC 1 cut(s) 446
EaeI YGGCCR 1 cut(s) 762
EagI CGGCCG 1 cut(s) 762
EclXI CGGCCG 1 cut(s) 762
Eco130I CCWWGG 2 cut(s) 336, 726
Eco147I AGGCCT 1 cut(s) 194
Eco31I GGTCTC 2 cut(s) 454, 761
Eco47I GGWCC 4 cut(s) 421, 938, 1037, 1079
Eco52I CGGCCG 1 cut(s) 762
Eco91I GGTNACC 1 cut(s) 606
EcoO65I GGTNACC 1 cut(s) 606
EcoRII CCWGG 2 cut(s) 934, 1033
EcoT14I CCWWGG 2 cut(s) 336, 726
ErhI CCWWGG 2 cut(s) 336, 726
FaeI CATG 8 cut(s) 296, 340, 400, 478, 502, 580, 691, 982
FaqI GGGAC 2 cut(s) 374, 377
FatI CATG 8 cut(s) 292, 336, 396, 474, 498, 576, 687, 978
FauI CCCGC 6 cut(s) 111, 319, 498, 1100, 1132, 1174
FbaI TGATCA 2 cut(s) 289, 840
Fnu4HI GCNGC 6 cut(s) 51, 723, 762, 945, 1095, 1170
FokI GGATG 2 cut(s) 215, 230
Fsp4HI GCNGC 6 cut(s) 51, 723, 762, 945, 1095, 1170
FspBI CTAG 1 cut(s) 1148
FspI TGCGCA 1 cut(s) 1010
GlaI GCGC 1 cut(s) 1010
GluI GCNGC 6 cut(s) 51, 723, 762, 945, 1095, 1170
GsaI CCCAGC 2 cut(s) 498, 1002
HaeIII GGCC 4 cut(s) 194, 504, 764, 778
HapII CCGG 7 cut(s) 505, 515, 771, 858, 886, 986, 1157
HgaI GACGC 2 cut(s) 161, 716
HhaI GCGC 1 cut(s) 1011
Hin1I GRCGYC 1 cut(s) 441
Hin1II CATG 8 cut(s) 296, 340, 400, 478, 502, 580, 691, 982
Hin6I GCGC 1 cut(s) 1009
HinP1I GCGC 1 cut(s) 1009
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HinfI GANTC 6 cut(s) 382, 471, 523, 549, 854, 982
HpaI GTTAAC 1 cut(s) 583
HpaII CCGG 7 cut(s) 505, 515, 771, 858, 886, 986, 1157
HphI GGTGA 4 cut(s) 104, 532, 600, 755
Hpy166II GTNNAC 7 cut(s) 76, 583, 655, 715, 751, 823, 991
Hpy188I TCNGA 4 cut(s) 470, 487, 548, 813
Hpy188III TCNNGA 4 cut(s) 247, 451, 532, 895
Hpy8I GTNNAC 7 cut(s) 76, 583, 655, 715, 751, 823, 991
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 4 cut(s) 38, 205, 789, 1074
HpyCH4III ACNGT 2 cut(s) 83, 833
HpyCH4IV ACGT 1 cut(s) 441
HpyCH4V TGCA 4 cut(s) 655, 1028, 1048, 1097
HpyF10VI GCNNNNNNNGC 8 cut(s) 56, 119, 273, 728, 877, 1133, 1157, 1166
HpyF3I CTNAG 1 cut(s) 718
HpySE526I ACGT 1 cut(s) 441
Hsp92I GRCGYC 1 cut(s) 441
Hsp92II CATG 8 cut(s) 296, 340, 400, 478, 502, 580, 691, 982
HspAI GCGC 1 cut(s) 1009
KroI GCCGGC 1 cut(s) 1156
KroNI GCCGGC 1 cut(s) 1158
Ksp22I TGATCA 2 cut(s) 289, 840
KspAI GTTAAC 1 cut(s) 583
KspI CCGCGG 1 cut(s) 948
Kzo9I GATC 5 cut(s) 289, 432, 756, 840, 1130
LmnI GCTCC 2 cut(s) 21, 549
Lsp1109I GCAGC 3 cut(s) 709, 1081, 1181
LweI GCATC 3 cut(s) 276, 358, 867
MabI ACCWGGT 1 cut(s) 934
MaeI CTAG 1 cut(s) 1148
MaeII ACGT 1 cut(s) 441
MaeIII GTNAC 3 cut(s) 92, 606, 833
MalI GATC 5 cut(s) 291, 434, 758, 842, 1132
MboI GATC 5 cut(s) 289, 432, 756, 840, 1130
MboII GAAGA 3 cut(s) 412, 474, 964
MfeI CAATTG 1 cut(s) 732
MhlI GDGCHC 1 cut(s) 657
MluCI AATT 3 cut(s) 662, 732, 1050
MlyI GAGTC 2 cut(s) 863, 976
MmeI TCCRAC 2 cut(s) 510, 1079
MroNI GCCGGC 1 cut(s) 1156
MseI TTAA 2 cut(s) 582, 918
MslI CAYNNNNRTG 2 cut(s) 335, 686
MspA1I CMGCKG 4 cut(s) 722, 947, 1094, 1127
MspI CCGG 7 cut(s) 505, 515, 771, 858, 886, 986, 1157
MspR9I CCNGG 3 cut(s) 859, 936, 1035
MunI CAATTG 1 cut(s) 732
MvaI CCWGG 2 cut(s) 936, 1035
MvnI CGCG 5 cut(s) 426, 710, 761, 947, 1107
MwoI GCNNNNNNNGC 8 cut(s) 56, 119, 273, 728, 877, 1133, 1157, 1166
NaeI GCCGGC 1 cut(s) 1158
NciI CCSGG 1 cut(s) 859
NcoI CCATGG 1 cut(s) 336
NdeII GATC 5 cut(s) 289, 432, 756, 840, 1130
NgoMIV GCCGGC 1 cut(s) 1156
NlaIII CATG 8 cut(s) 296, 340, 400, 478, 502, 580, 691, 982
NmeAIII GCCGAG 1 cut(s) 790
NmuCI GTSAC 3 cut(s) 92, 606, 833
NsbI TGCGCA 1 cut(s) 1010
NspI RCATGY 1 cut(s) 691
PceI AGGCCT 1 cut(s) 194
PciI ACATGT 1 cut(s) 687
PdiI GCCGGC 1 cut(s) 1158
PfeI GAWTC 4 cut(s) 382, 471, 523, 549
PflFI GACNNNGTC 2 cut(s) 155, 565
PfoI TCCNGGA 2 cut(s) 857, 1033
PinAI ACCGGT 1 cut(s) 770
PkrI GCNGC 6 cut(s) 52, 724, 763, 946, 1096, 1171
PleI GAGTC 2 cut(s) 862, 976
PpsI GAGTC 2 cut(s) 862, 976
PscI ACATGT 1 cut(s) 687
Psp6I CCWGG 2 cut(s) 934, 1033
PspEI GGTNACC 1 cut(s) 606
PspFI CCCAGC 2 cut(s) 494, 998
PspGI CCWGG 2 cut(s) 934, 1033
PspPI GGNCC 5 cut(s) 421, 502, 938, 1037, 1079
PsyI GACNNNGTC 2 cut(s) 155, 565
PvuII CAGCTG 2 cut(s) 722, 1094
RsaI GTAC 3 cut(s) 85, 590, 868
RsaNI GTAC 3 cut(s) 84, 589, 867
RseI CAYNNNNRTG 2 cut(s) 335, 686
SacII CCGCGG 1 cut(s) 948
SaqAI TTAA 2 cut(s) 582, 918
SatI GCNGC 6 cut(s) 51, 723, 762, 945, 1095, 1170
Sau3AI GATC 5 cut(s) 289, 432, 756, 840, 1130
Sau96I GGNCC 5 cut(s) 421, 502, 938, 1037, 1079
SchI GAGTC 2 cut(s) 863, 976
ScrFI CCNGG 3 cut(s) 859, 936, 1035
SduI GDGCHC 1 cut(s) 657
SexAI ACCWGGT 1 cut(s) 934
SfaNI GCATC 3 cut(s) 276, 358, 867
Sfr303I CCGCGG 1 cut(s) 948
SgrBI CCGCGG 1 cut(s) 948
SinI GGWCC 4 cut(s) 421, 938, 1037, 1079
SmiMI CAYNNNNRTG 2 cut(s) 335, 686
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 3 cut(s) 662, 732, 1050
SseBI AGGCCT 1 cut(s) 194
SspMI CTAG 1 cut(s) 1148
StuI AGGCCT 1 cut(s) 194
StyD4I CCNGG 3 cut(s) 857, 934, 1033
StyI CCWWGG 2 cut(s) 336, 726
TaaI ACNGT 2 cut(s) 83, 833
TaiI ACGT 1 cut(s) 444
TaqI TCGA 5 cut(s) 150, 380, 452, 693, 894
TasI AATT 3 cut(s) 662, 732, 1050
TauI GCSGC 3 cut(s) 53, 764, 947
TfiI GAWTC 4 cut(s) 382, 471, 523, 549
Tru1I TTAA 2 cut(s) 582, 918
Tru9I TTAA 2 cut(s) 582, 918
TscAI CASTG 2 cut(s) 362, 673
TseFI GTSAC 3 cut(s) 92, 606, 833
TseI GCWGC 3 cut(s) 722, 1094, 1169
Tsp45I GTSAC 3 cut(s) 92, 606, 833
TspDTI ATGAA 4 cut(s) 118, 413, 565, 936
TspGWI ACGGA 1 cut(s) 252
TspRI CASTG 2 cut(s) 362, 673
Tth111I GACNNNGTC 2 cut(s) 155, 565
VneI GTGCAC 1 cut(s) 653
VpaK11BI GGWCC 4 cut(s) 421, 938, 1037, 1079
XapI RAATTY 2 cut(s) 662, 1050
XceI RCATGY 1 cut(s) 691
XcmI CCANNNNNNNNNTGG 1 cut(s) 600
XspI CTAG 1 cut(s) 1148
ZraI GACGTC 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.