Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003916

Physical Location & Seq

Genomic Coordinates Reverse (-)

21016225 .. 21017145

Gene Structure 921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g18600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGCCACCACCAAGCTCCTTCTCTACCTTCTCCTCCTCGTCCAGCTCGCCGCCACAGCCTACTCCATCGGCGTAAACTACGGTACTCTCGCCGACAACCTTCCGCCACCGGCCCAAGTCGCCAACTTCATCAAAACCCAAACCACCATCGACGCCGTCAAACTCTTCGACGCCAACCCCGACATCATCAAGGCCTTCGCCAACACCAACATCTCCTTGACGATTACCATCCCCAACGGAGACATCCAGAGCCTCACAAATCTACGCACCGCTCGCCATTGGATCATTGATCATGTCAAGCCGTTTTACCCGGCAACCAAAATCAAATACATTGCTATGGGCAGCGAGGTCCTCCACTGGGGGGACGACGCTCTCAAGTCGAGCCTCGTCCCTGCCATGAGGACCTTCCACAACGCTTTGATCCGCGAGGGGATCAAGGATGTCAAGATCTCGACCCCTCACTCGCTCGGAATGATGTTGTCTTCTGACCCGCCCAGCACAGGCCGGTTCAGACCGGAGGTGCTTCCAATTCTGGCCCAATTGCTCCTGTTCTGTCGCCAGACCAAGTCGCCTTTCATGGTTAACCCGTACCCGTTTTTCGGGTGGTCACCCGAAAAGGAGAACTACGCTCTCTTCAGACCCAACAGTGGTGTGCGCGATAAATTCACCGGCAAGTTTTACACTAACATGTTCGATGGGTTGATGGACGCGGTTTACTCAGCTGCCAAGGCAATCGGGTTCGGTGACGTGGACTTGATTGCTGGCGAGACCGGTTGGCCTTCTGCTTGCGAGCTCCCAGTCTGCTCGGTACAGAACGCTGCGGACTACAACGGTAACTTGATCAAGCATATTGAGTCCGGTAAGGGTACGCCATTGATGCCAAACCGGAACGATCGAGACTTACATCTTTGCTTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

307

Amino Acids

33.78

Weight (kDa)

8.26

Isoelectric Point (pI)

32.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	23 - 295	4.7e-61	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55430
fragaria_vesca	FvH4_7g22480 FvH4_7g22494
malus_domestica	MD01G1134200.v1.1 MD07G1198400.v1.1 MD07G1198600.v1.1 MD07G1198700.v1.1
prunus_persica	Prupe.2G235400_v2.0.a1
pyrus_communis	pycom01g15500 pycom07g18550 pycom07g18560 pycom07g18600
rosa_chinensis	RchiOBHm_Chr1g0367091 RchiOBHm_Chr1g0367121
rosa_laevigata	RLG00000027296 RLG00000027300
rosa_multiflora	Rmu_co8239959.1_g000001 Rmu_co8287615.1_g000001 Rmu_sc0007424.1_g000003 Rmu_sc0007844.1_g000002
rosa_roxburghii	Rroxscaffold_4G00289610 Rroxscaffold_4G00289630
rosa_rugosa	Rorug01G0334300 Rorug01G0334700 Rorug01G0334800
rosa_samantha	Rh1AG341300 Rh1AG341500 Rh1BG302000 Rh1CG318000 Rh1CG318400 Rh1DG334200 Rh1DG334500
rosa_wichuraiana	Rw1G030320 Rw1G030350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	272
AccII	CGCG	3 cut(s)	426, 657, 710
AciI	CCGC	7 cut(s)	51, 104, 270, 424, 491, 710, 821
AclWI	GGATC	3 cut(s)	290, 415, 440
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	662
AcuI	CTGAAG	1 cut(s)	619
AcyI	GRCGYC	2 cut(s)	153, 171
AfaI	GTAC	4 cut(s)	85, 590, 810, 868
AfiI	CCNNNNNNNGG	5 cut(s)	358, 361, 500, 599, 647
AflIII	ACRYGT	1 cut(s)	687
AgeI	ACCGGT	1 cut(s)	770
AjiI	CACGTC	1 cut(s)	748
AjuI	GAANNNNNNNTTGG	2 cut(s)	557, 589
AluBI	AGCT	4 cut(s)	16, 46, 722, 793
AluI	AGCT	4 cut(s)	16, 46, 722, 793
Alw21I	GWGCWC	1 cut(s)	795
Alw26I	GTCTC	3 cut(s)	234, 761, 891
AlwI	GGATC	3 cut(s)	290, 415, 440
AoxI	GGCC	6 cut(s)	3, 111, 192, 502, 534, 776
ApeKI	GCWGC	3 cut(s)	342, 722, 818
ApoI	RAATTY	1 cut(s)	662
AsiGI	ACCGGT	1 cut(s)	770
AspLEI	GCGC	1 cut(s)	657
AspS9I	GGNCC	4 cut(s)	112, 349, 402, 535
AsuC2I	CCSGG	1 cut(s)	311
AsuHPI	GGTGA	3 cut(s)	600, 658, 755
AvaII	GGWCC	2 cut(s)	349, 402
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	795
BbsI	GAAGAC	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	795
BbvI	GCAGC	3 cut(s)	354, 709, 805
BccI	CCATC	5 cut(s)	74, 155, 236, 689, 697
BceAI	ACGGC	2 cut(s)	140, 286
BclI	TGATCA	2 cut(s)	289, 840
BcnI	CCSGG	1 cut(s)	311
BcoDI	GTCTC	3 cut(s)	234, 761, 891
BglII	AGATCT	1 cut(s)	447
BisI	GCNGC	4 cut(s)	51, 343, 723, 819
BlsI	GCNGC	4 cut(s)	52, 344, 724, 820
Bme1390I	CCNGG	1 cut(s)	311
Bme18I	GGWCC	2 cut(s)	349, 402
BmgBI	CACGTC	1 cut(s)	748
BmgT120I	GGNCC	4 cut(s)	112, 349, 402, 535
BmrFI	CCNGG	1 cut(s)	311
BmrI	ACTGGG	2 cut(s)	367, 791
BmsI	GCATC	1 cut(s)	867
BmuI	ACTGGG	2 cut(s)	367, 791
BpiI	GAAGAC	1 cut(s)	474
BpuEI	CTTGAG	1 cut(s)	359
BpuMI	CCSGG	1 cut(s)	311
BsaBI	GATNNNNATC	1 cut(s)	227
BsaHI	GRCGYC	2 cut(s)	153, 171
BsaI	GGTCTC	1 cut(s)	761
BsaJI	CCNNGG	1 cut(s)	726
BsaWI	WCCGGW	4 cut(s)	514, 770, 857, 885
Bsc4I	CCNNNNNNNGG	5 cut(s)	358, 361, 500, 599, 647
Bse118I	RCCGGY	4 cut(s)	109, 504, 668, 770
Bse1I	ACTGG	2 cut(s)	362, 797
Bse3DI	GCAATG	1 cut(s)	330
Bse8I	GATNNNNATC	1 cut(s)	227
BseDI	CCNNGG	1 cut(s)	726
BseGI	GGATG	3 cut(s)	228, 243, 445
BseJI	GATNNNNATC	1 cut(s)	227
BseLI	CCNNNNNNNGG	5 cut(s)	358, 361, 500, 599, 647
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	1 cut(s)	732
BseNI	ACTGG	2 cut(s)	362, 797
BseRI	GAGGAG	2 cut(s)	23, 26
BseXI	GCAGC	3 cut(s)	354, 709, 805
BseYI	CCCAGC	1 cut(s)	494
Bsh1236I	CGCG	3 cut(s)	426, 657, 710
Bsh1285I	CGRYCG	1 cut(s)	895
BshFI	GGCC	6 cut(s)	5, 113, 194, 504, 536, 778
BshTI	ACCGGT	1 cut(s)	770
BsiEI	CGRYCG	1 cut(s)	895
BsiHKAI	GWGCWC	1 cut(s)	795
BsiSI	CCGG	8 cut(s)	110, 311, 505, 515, 669, 771, 858, 886
BslFI	GGGAC	2 cut(s)	374, 377
BslI	CCNNNNNNNGG	5 cut(s)	358, 361, 500, 599, 647
BsmAI	GTCTC	3 cut(s)	234, 761, 891
BsmFI	GGGAC	2 cut(s)	374, 377
BsnI	GGCC	6 cut(s)	5, 113, 194, 504, 536, 778
Bso31I	GGTCTC	1 cut(s)	761
Bsp1286I	GDGCHC	1 cut(s)	795
Bsp143I	GATC	7 cut(s)	282, 289, 420, 432, 447, 840, 892
BspACI	CCGC	7 cut(s)	51, 104, 270, 424, 491, 710, 821
BspANI	GGCC	6 cut(s)	5, 113, 194, 504, 536, 778
BspCNI	CTCAG	1 cut(s)	731
BspFNI	CGCG	3 cut(s)	426, 657, 710
BspPI	GGATC	3 cut(s)	290, 415, 440
BspTNI	GGTCTC	1 cut(s)	761
BsrBI	CCGCTC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	330
BsrFI	RCCGGY	4 cut(s)	109, 504, 668, 770
BsrI	ACTGG	2 cut(s)	362, 797
BssAI	RCCGGY	4 cut(s)	109, 504, 668, 770
BssECI	CCNNGG	1 cut(s)	726
BssMI	GATC	7 cut(s)	282, 289, 420, 432, 447, 840, 892
BssNI	GRCGYC	2 cut(s)	153, 171
BssT1I	CCWWGG	1 cut(s)	726
Bst4CI	ACNGT	3 cut(s)	83, 647, 833
Bst6I	CTCTTC	2 cut(s)	170, 638
BstACI	GRCGYC	2 cut(s)	153, 171
BstC8I	GCNNGC	5 cut(s)	48, 274, 763, 787, 791
BstDEI	CTNAG	1 cut(s)	718
BstEII	GGTNACC	1 cut(s)	606
BstF5I	GGATG	3 cut(s)	228, 243, 445
BstFNI	CGCG	3 cut(s)	426, 657, 710
BstHHI	GCGC	1 cut(s)	657
BstKTI	GATC	7 cut(s)	285, 292, 423, 435, 450, 843, 895
BstMAI	GTCTC	3 cut(s)	234, 761, 891
BstMBI	GATC	7 cut(s)	282, 289, 420, 432, 447, 840, 892
BstMCI	CGRYCG	1 cut(s)	895
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 119, 273, 728, 877
BstNSI	RCATGY	1 cut(s)	691
BstPI	GGTNACC	1 cut(s)	606
BstSCI	CCNGG	1 cut(s)	309
BstUI	CGCG	3 cut(s)	426, 657, 710
BstV1I	GCAGC	3 cut(s)	354, 709, 805
BstV2I	GAAGAC	1 cut(s)	474
BstX2I	RGATCY	1 cut(s)	447
BstYI	RGATCY	1 cut(s)	447
BsuRI	GGCC	6 cut(s)	5, 113, 194, 504, 536, 778
BtrI	CACGTC	1 cut(s)	748
BtsCI	GGATG	3 cut(s)	228, 243, 445
BtsIMutI	CAGTG	2 cut(s)	355, 652
Cac8I	GCNNGC	5 cut(s)	48, 274, 763, 787, 791
CfoI	GCGC	1 cut(s)	657
Cfr10I	RCCGGY	4 cut(s)	109, 504, 668, 770
Cfr13I	GGNCC	4 cut(s)	112, 349, 402, 535
CseI	GACGC	4 cut(s)	161, 179, 377, 716
Csp6I	GTAC	4 cut(s)	84, 589, 809, 867
CspAI	ACCGGT	1 cut(s)	770
CviAII	CATG	4 cut(s)	293, 397, 577, 688
CviQI	GTAC	4 cut(s)	84, 589, 809, 867
DdeI	CTNAG	1 cut(s)	718
DpnI	GATC	7 cut(s)	284, 291, 422, 434, 449, 842, 894
DpnII	GATC	7 cut(s)	282, 289, 420, 432, 447, 840, 892
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	170, 638
EarI	CTCTTC	2 cut(s)	170, 638
EciI	GGCGGA	1 cut(s)	93
Ecl136II	GAGCTC	1 cut(s)	793
Eco130I	CCWWGG	1 cut(s)	726
Eco147I	AGGCCT	1 cut(s)	194
Eco24I	GRGCYC	1 cut(s)	795
Eco31I	GGTCTC	1 cut(s)	761
Eco47I	GGWCC	2 cut(s)	349, 402
Eco53kI	GAGCTC	1 cut(s)	793
Eco57I	CTGAAG	1 cut(s)	619
Eco91I	GGTNACC	1 cut(s)	606
EcoICRI	GAGCTC	1 cut(s)	793
EcoO109I	RGGNCCY	2 cut(s)	349, 402
EcoO65I	GGTNACC	1 cut(s)	606
EcoT14I	CCWWGG	1 cut(s)	726
EcoT38I	GRGCYC	1 cut(s)	795
ErhI	CCWWGG	1 cut(s)	726
FaeI	CATG	4 cut(s)	296, 400, 580, 691
FaiI	YATR	6 cut(s)	294, 338, 398, 578, 689, 849
FaqI	GGGAC	2 cut(s)	374, 377
FatI	CATG	4 cut(s)	292, 396, 576, 687
FauI	CCCGC	1 cut(s)	498
FbaI	TGATCA	2 cut(s)	289, 840
Fnu4HI	GCNGC	4 cut(s)	51, 343, 723, 819
FokI	GGATG	3 cut(s)	215, 230, 452
FriOI	GRGCYC	1 cut(s)	795
Fsp4HI	GCNGC	4 cut(s)	51, 343, 723, 819
GlaI	GCGC	1 cut(s)	656
GluI	GCNGC	4 cut(s)	51, 343, 723, 819
GsaI	CCCAGC	1 cut(s)	498
HaeIII	GGCC	6 cut(s)	5, 113, 194, 504, 536, 778
HapII	CCGG	8 cut(s)	110, 311, 505, 515, 669, 771, 858, 886
HgaI	GACGC	4 cut(s)	161, 179, 377, 716
HhaI	GCGC	1 cut(s)	657
Hin1I	GRCGYC	2 cut(s)	153, 171
Hin1II	CATG	4 cut(s)	296, 400, 580, 691
Hin6I	GCGC	1 cut(s)	655
HinP1I	GCGC	1 cut(s)	655
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HinfI	GANTC	1 cut(s)	854
HpaI	GTTAAC	1 cut(s)	583
HpaII	CCGG	8 cut(s)	110, 311, 505, 515, 669, 771, 858, 886
HphI	GGTGA	3 cut(s)	600, 658, 755
Hpy166II	GTNNAC	4 cut(s)	76, 583, 715, 751
Hpy188I	TCNGA	4 cut(s)	470, 487, 512, 638
Hpy188III	TCNNGA	4 cut(s)	247, 445, 451, 896
Hpy8I	GTNNAC	4 cut(s)	76, 583, 715, 751
Hpy99I	CGWCG	3 cut(s)	155, 173, 371
HpyAV	CCTTC	6 cut(s)	29, 38, 110, 205, 415, 789
HpyCH4III	ACNGT	3 cut(s)	83, 647, 833
HpyCH4IV	ACGT	1 cut(s)	747
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 119, 273, 728, 877
HpyF3I	CTNAG	1 cut(s)	718
HpySE526I	ACGT	1 cut(s)	747
Hsp92I	GRCGYC	2 cut(s)	153, 171
Hsp92II	CATG	4 cut(s)	296, 400, 580, 691
HspAI	GCGC	1 cut(s)	655
Ksp22I	TGATCA	2 cut(s)	289, 840
KspAI	GTTAAC	1 cut(s)	583
Kzo9I	GATC	7 cut(s)	282, 289, 420, 432, 447, 840, 892
LmnI	GCTCC	3 cut(s)	21, 549, 798
Lsp1109I	GCAGC	3 cut(s)	354, 709, 805
LweI	GCATC	1 cut(s)	867
MaeII	ACGT	1 cut(s)	747
MaeIII	GTNAC	3 cut(s)	606, 743, 833
MalI	GATC	7 cut(s)	284, 291, 422, 434, 449, 842, 894
MbiI	CCGCTC	1 cut(s)	272
MboI	GATC	7 cut(s)	282, 289, 420, 432, 447, 840, 892
MboII	GAAGA	3 cut(s)	157, 474, 625
MfeI	CAATTG	1 cut(s)	539
MflI	RGATCY	1 cut(s)	447
MhlI	GDGCHC	1 cut(s)	795
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	528, 539, 662
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	863
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	582, 919
MslI	CAYNNNNRTG	2 cut(s)	335, 686
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	722
MspI	CCGG	8 cut(s)	110, 311, 505, 515, 669, 771, 858, 886
MspR9I	CCNGG	1 cut(s)	311
MunI	CAATTG	1 cut(s)	539
MvnI	CGCG	3 cut(s)	426, 657, 710
MwoI	GCNNNNNNNGC	5 cut(s)	56, 119, 273, 728, 877
NciI	CCSGG	1 cut(s)	311
NdeII	GATC	7 cut(s)	282, 289, 420, 432, 447, 840, 892
NlaIII	CATG	4 cut(s)	296, 400, 580, 691
NmuCI	GTSAC	2 cut(s)	606, 743
NspI	RCATGY	1 cut(s)	691
PceI	AGGCCT	1 cut(s)	194
PciI	ACATGT	1 cut(s)	687
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PflFI	GACNNNGTC	2 cut(s)	155, 565
PinAI	ACCGGT	1 cut(s)	770
PkrI	GCNGC	4 cut(s)	52, 344, 724, 820
Ple19I	CGATCG	1 cut(s)	895
PleI	GAGTC	1 cut(s)	862
PpsI	GAGTC	1 cut(s)	862
PpuMI	RGGWCCY	2 cut(s)	349, 402
PscI	ACATGT	1 cut(s)	687
Psp124BI	GAGCTC	1 cut(s)	795
Psp5II	RGGWCCY	2 cut(s)	349, 402
PspEI	GGTNACC	1 cut(s)	606
PspFI	CCCAGC	1 cut(s)	494
PspPI	GGNCC	4 cut(s)	112, 349, 402, 535
PspPPI	RGGWCCY	2 cut(s)	349, 402
PsuI	RGATCY	1 cut(s)	447
PsyI	GACNNNGTC	2 cut(s)	155, 565
PvuI	CGATCG	1 cut(s)	895
PvuII	CAGCTG	1 cut(s)	722
RsaI	GTAC	4 cut(s)	85, 590, 810, 868
RsaNI	GTAC	4 cut(s)	84, 589, 809, 867
RseI	CAYNNNNRTG	2 cut(s)	335, 686
SacI	GAGCTC	1 cut(s)	795
SaqAI	TTAA	2 cut(s)	582, 919
SatI	GCNGC	4 cut(s)	51, 343, 723, 819
Sau3AI	GATC	7 cut(s)	282, 289, 420, 432, 447, 840, 892
Sau96I	GGNCC	4 cut(s)	112, 349, 402, 535
SchI	GAGTC	1 cut(s)	863
ScrFI	CCNGG	1 cut(s)	311
SduI	GDGCHC	1 cut(s)	795
SfaNI	GCATC	1 cut(s)	867
SinI	GGWCC	2 cut(s)	349, 402
SmiMI	CAYNNNNRTG	2 cut(s)	335, 686
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	3 cut(s)	528, 539, 662
SseBI	AGGCCT	1 cut(s)	194
SsiI	CCGC	7 cut(s)	51, 104, 270, 424, 491, 710, 821
SstI	GAGCTC	1 cut(s)	795
StuI	AGGCCT	1 cut(s)	194
StyD4I	CCNGG	1 cut(s)	309
StyI	CCWWGG	1 cut(s)	726
TaaI	ACNGT	3 cut(s)	83, 647, 833
TaiI	ACGT	1 cut(s)	750
TaqI	TCGA	6 cut(s)	150, 168, 380, 452, 693, 895
TasI	AATT	3 cut(s)	528, 539, 662
TauI	GCSGC	1 cut(s)	53
Tru1I	TTAA	2 cut(s)	582, 919
Tru9I	TTAA	2 cut(s)	582, 919
TscAI	CASTG	2 cut(s)	362, 652
TseFI	GTSAC	2 cut(s)	606, 743
TseI	GCWGC	3 cut(s)	342, 722, 818
Tsp45I	GTSAC	2 cut(s)	606, 743
TspDTI	ATGAA	2 cut(s)	118, 565
TspGWI	ACGGA	1 cut(s)	252
TspRI	CASTG	2 cut(s)	362, 652
Tth111I	GACNNNGTC	2 cut(s)	155, 565
VpaK11BI	GGWCC	2 cut(s)	349, 402
XapI	RAATTY	1 cut(s)	662
XceI	RCATGY	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.