Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8239959.1

Orthogroup ID

OG0003916

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 771

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8239959.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ccaccttctcaagtcgcgaatttcctcaagacccaaaccatcatcgacgcagtgaaaatcttcgatatgaacccggacatcatcaaagccttcgccaactcgggcatctcattgacagtcacgctccccaacggggacatccccaccctcacaaagccccgcgcagctcgccggtgggtccagcagaacatcaagcccttccacccggccaccagaatacgttacatctgcgtcggcaccgaggttcttcactggggagatgatgcccaaaagtccaacctagtcgcggccatgagaaccctcaaccatgccctaagtgttgagggaatcaaggacattaagatttcaaccccacactctctaggcatcatgctggcgtctgagcccccaagtcagggccgattcagaccggagctgacgcaaattttgacacccatgctccgattcttgcgagaaaccaagtcccctctcatggtgaatccgtacccttacttcgggtggaccccgcaaaacgaaaactatgcactgttcaagcagtcagtggtggatccgatcacaaagctaacatacaacagtatgttcgacggcttgatggactccatttactcggcggcaaaggtgctagggttccctgatgtcaatatacttgtgggagagaccggttggccttcggcttgtgaattcccggtttgctcgatgcaacatgccgcggattataatggtaacctgatcaagcacgtggagtcgggtcagggcacacctttgatgccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

257

Amino Acids

28.51

Weight (kDa)

8.53

Isoelectric Point (pI)

32.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55430
fragaria_vesca	FvH4_7g22480 FvH4_7g22494
malus_domestica	MD01G1134200.v1.1 MD07G1198400.v1.1 MD07G1198600.v1.1 MD07G1198700.v1.1
prunus_persica	Prupe.2G235400_v2.0.a1
pyrus_communis	pycom01g15500 pycom07g18550 pycom07g18560 pycom07g18600
rosa_chinensis	RchiOBHm_Chr1g0367091 RchiOBHm_Chr1g0367121
rosa_laevigata	RLG00000027296 RLG00000027300
rosa_multiflora	Rmu_co8239959.1_g000001 Rmu_co8287615.1_g000001 Rmu_sc0007424.1_g000003 Rmu_sc0007844.1_g000002
rosa_roxburghii	Rroxscaffold_4G00289610 Rroxscaffold_4G00289630
rosa_rugosa	Rorug01G0334300 Rorug01G0334700 Rorug01G0334800
rosa_samantha	Rh1AG341300 Rh1AG341500 Rh1BG302000 Rh1CG318000 Rh1CG318400 Rh1DG334200 Rh1DG334500
rosa_wichuraiana	Rw1G030320 Rw1G030350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	717
AccB1I	GGYRCC	1 cut(s)	236
AccII	CGCG	4 cut(s)	17, 162, 287, 710
AciI	CCGC	6 cut(s)	160, 287, 506, 611, 708, 710
AclWI	GGATC	2 cut(s)	542, 555
AcoI	YGGCCR	2 cut(s)	207, 288
AcsI	RAATTY	3 cut(s)	19, 423, 680
AcvI	CACGTG	1 cut(s)	739
AcyI	GRCGYC	1 cut(s)	377
AfaI	GTAC	1 cut(s)	485
AfiI	CCNNNNNNNGG	6 cut(s)	133, 286, 394, 395, 472, 494
AgeI	ACCGGT	1 cut(s)	659
AgsI	TTSAA	2 cut(s)	348, 532
AluBI	AGCT	3 cut(s)	167, 415, 562
AluI	AGCT	3 cut(s)	167, 415, 562
Alw26I	GTCTC	1 cut(s)	650
AlwI	GGATC	2 cut(s)	542, 555
Ama87I	CYCGRG	1 cut(s)	100
AoxI	GGCC	4 cut(s)	207, 288, 397, 665
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	3 cut(s)	19, 423, 680
ArsI	GACNNNNNNTTYG	2 cut(s)	409, 441
AsiGI	ACCGGT	1 cut(s)	659
Asp700I	GAANNNNTTC	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	164
AspS9I	GGNCC	3 cut(s)	178, 397, 501
AsuC2I	CCSGG	3 cut(s)	74, 206, 686
AsuHPI	GGTGA	1 cut(s)	487
AvaI	CYCGRG	1 cut(s)	100
AvaII	GGWCC	2 cut(s)	178, 501
BaeGI	GKGCMC	1 cut(s)	758
BamHI	GGATCC	1 cut(s)	547
BanI	GGYRCC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	387
BarI	GAAGNNNNNNTAC	2 cut(s)	476, 508
BbrPI	CACGTG	1 cut(s)	739
BbvI	GCAGC	1 cut(s)	176
BccI	CCATC	2 cut(s)	47, 586
BceAI	ACGGC	1 cut(s)	601
BcgI	CGANNNNNNTGC	2 cut(s)	503, 537
BclI	TGATCA	1 cut(s)	729
BcnI	CCSGG	3 cut(s)	74, 206, 686
BcoDI	GTCTC	1 cut(s)	650
BfaI	CTAG	3 cut(s)	281, 362, 623
BisI	GCNGC	4 cut(s)	165, 288, 612, 708
BlsI	GCNGC	4 cut(s)	166, 289, 613, 709
Bme1390I	CCNGG	3 cut(s)	74, 206, 686
Bme18I	GGWCC	2 cut(s)	178, 501
BmeT110I	CYCGRG	1 cut(s)	100
BmgT120I	GGNCC	3 cut(s)	178, 397, 501
BmiI	GGNNCC	5 cut(s)	179, 238, 503, 549, 629
BmrFI	CCNGG	3 cut(s)	74, 206, 686
BmrI	ACTGGG	1 cut(s)	262
BmsI	GCATC	5 cut(s)	114, 253, 375, 687, 756
BmuI	ACTGGG	1 cut(s)	262
BpuEI	CTTGAG	1 cut(s)	11
BpuMI	CCSGG	3 cut(s)	74, 206, 686
BsaAI	YACGTR	1 cut(s)	739
BsaHI	GRCGYC	1 cut(s)	377
BsaI	GGTCTC	1 cut(s)	650
BsaJI	CCNNGG	2 cut(s)	240, 708
BsaWI	WCCGGW	2 cut(s)	409, 659
BsaXI	ACNNNNNCTCC	2 cut(s)	423, 453
Bsc4I	CCNNNNNNNGG	6 cut(s)	133, 286, 394, 395, 472, 494
Bse118I	RCCGGY	2 cut(s)	171, 659
Bse1I	ACTGG	1 cut(s)	257
BseDI	CCNNGG	2 cut(s)	240, 708
BseGI	GGATG	1 cut(s)	138
BseLI	CCNNNNNNNGG	6 cut(s)	133, 286, 394, 395, 472, 494
BseMII	CTCAG	1 cut(s)	372
BseNI	ACTGG	1 cut(s)	257
BseSI	GKGCMC	1 cut(s)	758
BseXI	GCAGC	1 cut(s)	176
Bsh1236I	CGCG	4 cut(s)	17, 162, 287, 710
BshFI	GGCC	4 cut(s)	209, 290, 399, 667
BshNI	GGYRCC	1 cut(s)	236
BshTI	ACCGGT	1 cut(s)	659
BsiHKCI	CYCGRG	1 cut(s)	100
BsiSI	CCGG	6 cut(s)	74, 172, 206, 410, 660, 686
BslFI	GGGAC	2 cut(s)	149, 448
BslI	CCNNNNNNNGG	6 cut(s)	133, 286, 394, 395, 472, 494
BsmAI	GTCTC	1 cut(s)	650
BsmFI	GGGAC	2 cut(s)	149, 448
BsnI	GGCC	4 cut(s)	209, 290, 399, 667
Bso31I	GGTCTC	1 cut(s)	650
BsoBI	CYCGRG	1 cut(s)	100
Bsp1286I	GDGCHC	2 cut(s)	387, 758
Bsp143I	GATC	3 cut(s)	547, 552, 729
Bsp68I	TCGCGA	1 cut(s)	17
BspACI	CCGC	6 cut(s)	160, 287, 506, 611, 708, 710
BspANI	GGCC	4 cut(s)	209, 290, 399, 667
BspCNI	CTCAG	1 cut(s)	373
BspFNI	CGCG	4 cut(s)	17, 162, 287, 710
BspLI	GGNNCC	5 cut(s)	179, 238, 503, 549, 629
BspPI	GGATC	2 cut(s)	542, 555
BspT107I	GGYRCC	1 cut(s)	236
BspTNI	GGTCTC	1 cut(s)	650
BsrFI	RCCGGY	2 cut(s)	171, 659
BsrI	ACTGG	1 cut(s)	257
BssAI	RCCGGY	2 cut(s)	171, 659
BssECI	CCNNGG	2 cut(s)	240, 708
BssMI	GATC	3 cut(s)	547, 552, 729
BssNI	GRCGYC	1 cut(s)	377
Bst4CI	ACNGT	3 cut(s)	118, 528, 575
BstACI	GRCGYC	1 cut(s)	377
BstBAI	YACGTR	1 cut(s)	739
BstC8I	GCNNGC	2 cut(s)	169, 375
BstDEI	CTNAG	2 cut(s)	314, 381
BstDSI	CCRYGG	1 cut(s)	708
BstEII	GGTNACC	1 cut(s)	722
BstF5I	GGATG	1 cut(s)	138
BstFNI	CGCG	4 cut(s)	17, 162, 287, 710
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	3 cut(s)	550, 555, 732
BstMAI	GTCTC	1 cut(s)	650
BstMBI	GATC	3 cut(s)	547, 552, 729
BstMWI	GCNNNNNNNGC	1 cut(s)	168
BstNSI	RCATGY	1 cut(s)	707
BstPI	GGTNACC	1 cut(s)	722
BstSCI	CCNGG	3 cut(s)	72, 204, 684
BstSLI	GKGCMC	1 cut(s)	758
BstUI	CGCG	4 cut(s)	17, 162, 287, 710
BstV1I	GCAGC	1 cut(s)	176
BstX2I	RGATCY	1 cut(s)	547
BstYI	RGATCY	1 cut(s)	547
BsuRI	GGCC	4 cut(s)	209, 290, 399, 667
BtgI	CCRYGG	1 cut(s)	708
BtsCI	GGATG	1 cut(s)	138
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	4 cut(s)	57, 250, 524, 546
BtuMI	TCGCGA	1 cut(s)	17
Cac8I	GCNNGC	2 cut(s)	169, 375
CfoI	GCGC	1 cut(s)	164
Cfr10I	RCCGGY	2 cut(s)	171, 659
Cfr13I	GGNCC	3 cut(s)	178, 397, 501
Cfr42I	CCGCGG	1 cut(s)	711
CseI	GACGC	4 cut(s)	56, 220, 366, 427
Csp6I	GTAC	1 cut(s)	484
CspAI	ACCGGT	1 cut(s)	659
CviAII	CATG	6 cut(s)	292, 308, 370, 436, 472, 704
CviQI	GTAC	1 cut(s)	484
DdeI	CTNAG	2 cut(s)	314, 381
DpnI	GATC	3 cut(s)	549, 554, 731
DpnII	GATC	3 cut(s)	547, 552, 729
EaeI	YGGCCR	2 cut(s)	207, 288
Eco24I	GRGCYC	1 cut(s)	387
Eco31I	GGTCTC	1 cut(s)	650
Eco47I	GGWCC	2 cut(s)	178, 501
Eco72I	CACGTG	1 cut(s)	739
Eco88I	CYCGRG	1 cut(s)	100
Eco91I	GGTNACC	1 cut(s)	722
EcoO65I	GGTNACC	1 cut(s)	722
EcoRI	GAATTC	1 cut(s)	680
EcoT38I	GRGCYC	1 cut(s)	387
FaeI	CATG	6 cut(s)	295, 311, 373, 439, 475, 707
FaqI	GGGAC	2 cut(s)	149, 448
FatI	CATG	6 cut(s)	291, 307, 369, 435, 471, 703
FauI	CCCGC	2 cut(s)	167, 513
FbaI	TGATCA	1 cut(s)	729
Fnu4HI	GCNGC	4 cut(s)	165, 288, 612, 708
FokI	GGATG	1 cut(s)	125
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	4 cut(s)	165, 288, 612, 708
FspBI	CTAG	3 cut(s)	281, 362, 623
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	4 cut(s)	165, 288, 612, 708
HaeIII	GGCC	4 cut(s)	209, 290, 399, 667
HapII	CCGG	6 cut(s)	74, 172, 206, 410, 660, 686
HgaI	GACGC	4 cut(s)	56, 220, 366, 427
HhaI	GCGC	1 cut(s)	164
Hin1I	GRCGYC	1 cut(s)	377
Hin1II	CATG	6 cut(s)	295, 311, 373, 439, 475, 707
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HinfI	GANTC	6 cut(s)	327, 402, 444, 478, 596, 743
HpaII	CCGG	6 cut(s)	74, 172, 206, 410, 660, 686
HphI	GGTGA	1 cut(s)	487
Hpy166II	GTNNAC	1 cut(s)	501
Hpy188I	TCNGA	4 cut(s)	382, 407, 443, 552
Hpy188III	TCNNGA	2 cut(s)	16, 28
Hpy8I	GTNNAC	1 cut(s)	501
Hpy99I	CGWCG	3 cut(s)	50, 236, 587
HpyAV	CCTTC	4 cut(s)	15, 100, 208, 678
HpyCH4III	ACNGT	3 cut(s)	118, 528, 575
HpyCH4IV	ACGT	2 cut(s)	220, 738
HpyCH4V	TGCA	2 cut(s)	524, 700
HpyF10VI	GCNNNNNNNGC	1 cut(s)	168
HpyF3I	CTNAG	2 cut(s)	314, 381
HpySE526I	ACGT	2 cut(s)	220, 738
Hsp92I	GRCGYC	1 cut(s)	377
Hsp92II	CATG	6 cut(s)	295, 311, 373, 439, 475, 707
HspAI	GCGC	1 cut(s)	162
Ksp22I	TGATCA	1 cut(s)	729
KspI	CCGCGG	1 cut(s)	711
Kzo9I	GATC	3 cut(s)	547, 552, 729
LmnI	GCTCC	3 cut(s)	129, 412, 444
Lsp1109I	GCAGC	1 cut(s)	176
LweI	GCATC	5 cut(s)	114, 253, 375, 687, 756
MaeI	CTAG	3 cut(s)	281, 362, 623
MaeII	ACGT	2 cut(s)	220, 738
MaeIII	GTNAC	3 cut(s)	118, 221, 722
MalI	GATC	3 cut(s)	549, 554, 731
MboI	GATC	3 cut(s)	547, 552, 729
MboII	GAAGA	2 cut(s)	52, 239
MflI	RGATCY	1 cut(s)	547
MhlI	GDGCHC	2 cut(s)	387, 758
MluCI	AATT	3 cut(s)	19, 423, 680
MlyI	GAGTC	2 cut(s)	590, 752
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	6 cut(s)	35, 158, 235, 311, 316, 477
MroXI	GAANNNNTTC	1 cut(s)	59
MseI	TTAA	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	710
MspI	CCGG	6 cut(s)	74, 172, 206, 410, 660, 686
MspR9I	CCNGG	3 cut(s)	74, 206, 686
MvnI	CGCG	4 cut(s)	17, 162, 287, 710
MwoI	GCNNNNNNNGC	1 cut(s)	168
NciI	CCSGG	3 cut(s)	74, 206, 686
NdeII	GATC	3 cut(s)	547, 552, 729
NlaIII	CATG	6 cut(s)	295, 311, 373, 439, 475, 707
NlaIV	GGNNCC	5 cut(s)	179, 238, 503, 549, 629
NmeAIII	GCCGAG	1 cut(s)	587
NmuCI	GTSAC	1 cut(s)	118
NruI	TCGCGA	1 cut(s)	17
NspI	RCATGY	1 cut(s)	707
PdmI	GAANNNNTTC	1 cut(s)	59
PfeI	GAWTC	4 cut(s)	327, 402, 444, 478
PinAI	ACCGGT	1 cut(s)	659
PkrI	GCNGC	4 cut(s)	166, 289, 613, 709
PleI	GAGTC	2 cut(s)	590, 751
PmaCI	CACGTG	1 cut(s)	739
PmlI	CACGTG	1 cut(s)	739
PpsI	GAGTC	2 cut(s)	590, 751
Ppu21I	YACGTR	1 cut(s)	739
PsiI	TTATAA	1 cut(s)	717
PspCI	CACGTG	1 cut(s)	739
PspEI	GGTNACC	1 cut(s)	722
PspN4I	GGNNCC	5 cut(s)	179, 238, 503, 549, 629
PspPI	GGNCC	3 cut(s)	178, 397, 501
PsuI	RGATCY	1 cut(s)	547
RruI	TCGCGA	1 cut(s)	17
RsaI	GTAC	1 cut(s)	485
RsaNI	GTAC	1 cut(s)	484
SacII	CCGCGG	1 cut(s)	711
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	4 cut(s)	165, 288, 612, 708
Sau3AI	GATC	3 cut(s)	547, 552, 729
Sau96I	GGNCC	3 cut(s)	178, 397, 501
SchI	GAGTC	2 cut(s)	590, 752
ScrFI	CCNGG	3 cut(s)	74, 206, 686
SduI	GDGCHC	2 cut(s)	387, 758
SfaNI	GCATC	5 cut(s)	114, 253, 375, 687, 756
Sfr303I	CCGCGG	1 cut(s)	711
SgrAI	CRCCGGYG	1 cut(s)	171
SgrBI	CCGCGG	1 cut(s)	711
SinI	GGWCC	2 cut(s)	178, 501
SmlI	CTYRAG	2 cut(s)	9, 26
SmoI	CTYRAG	2 cut(s)	9, 26
Sse9I	AATT	3 cut(s)	19, 423, 680
SsiI	CCGC	6 cut(s)	160, 287, 506, 611, 708, 710
SspMI	CTAG	3 cut(s)	281, 362, 623
StyD4I	CCNGG	3 cut(s)	72, 204, 684
TaaI	ACNGT	3 cut(s)	118, 528, 575
TaiI	ACGT	2 cut(s)	223, 741
TaqI	TCGA	4 cut(s)	45, 63, 582, 695
TasI	AATT	3 cut(s)	19, 423, 680
TauI	GCSGC	3 cut(s)	290, 614, 710
TfiI	GAWTC	4 cut(s)	327, 402, 444, 478
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	4 cut(s)	57, 257, 531, 546
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	1 cut(s)	83
TspGWI	ACGGA	1 cut(s)	471
TspRI	CASTG	4 cut(s)	57, 257, 531, 546
VpaK11BI	GGWCC	2 cut(s)	178, 501
XapI	RAATTY	3 cut(s)	19, 423, 680
XceI	RCATGY	1 cut(s)	707
XmnI	GAANNNNTTC	1 cut(s)	59
XspI	CTAG	3 cut(s)	281, 362, 623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.