pycom07g18550

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
20995478 .. 20996509
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g18550.1

Sequence Viewer

Length: 1032 bp
ATGGCTACCACCAAGTTCCTCCTCTCCCTTCTCCTCCTCGTCCAGCTCGCCGCCACAGCCCACTCCATCGGTGTAAACTACGGTACTCTCGGCGACAACCTCCCGCCACCAGCCAAAGTCGCCGACTTCATCAAAACCCAAACCAACATCGACGCTGTCAAAATCTTTGACACCAACCCCGACATCATCAAGGCCTTCGCCAACACCAACATCTCCTTGACGATTACCATCCCTAACGGAGACATCCCGAAACTCATAAAGCTGCGCACCGCTCGCCGTTGGGTCGTTGATCATGTCAAGCCGTTTTACCCGGCAAGCAAAATCAAATACATTGCCATGGGCAACGAGGTGCTTCACTGGGGGGACGATGCTCTCAAGTCGAATCTCGTCCCTGCCATGAAGACATTACACAACGCTTTGGTCCGCGAGGGGATCAAAGACGTCAAGGTCTCGACCCCTCACTCGCTCGGAATCATGTTGTCTTCCGACCCGCCCAGCATGGGCCGGTTTAGACCGGAGGTGATTCCAATCCTGACCCAAATGCTCCGATTCTGTCGCCAGACCAAGTCGCCTTTCATGGTTAACCCGTACCCATATTTCGGGTGGTCACCCGAAAAGGAGAGCTACGCTCTCTTTAGACCCAACAATGGTGCGCACGATAAATTCACTGGCAAGTTTTACACTAACATGTTCGATGGGTTGATGGACGCGGTTTACTCAGCTGCCAAGGCAATTGGGTTTGGTGATGTGAACTTGATCGCGGCCGAGACCGGTTGGCCTTCGGCTTGCGAGTTCCCAGTCTGCTCGGTTCAGAACGCTGTGGACTACAACGGTCACTTGATCAAGCATATTGAGTCCGGGAGGGGTACGCCCTTGATGCCAAACCGGAAGTTCGAAACTTACATATTTGCTCTGTTTAATGAAAACCAGAAACCTGGTCCAGCCGCGGAGAAGAACTTTGGGCTGTTCAAACCAGACATGACTCCGGTTTACAATGCTGGGGTTATGCGCAATCAACAGGTTGGTTCTTGA

Protein Analysis

344

Amino Acids

37.98

Weight (kDa)

9.23

Isoelectric Point (pI)

27.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 23 - 332 4e-80 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 446
AatII GACGTC 1 cut(s) 444
Acc16I TGCGCA 3 cut(s) 266, 654, 1010
AccBSI CCGCTC 1 cut(s) 272
AccII CGCG 4 cut(s) 426, 710, 761, 947
AciI CCGC 9 cut(s) 51, 104, 270, 424, 491, 710, 761, 945, 947
AclWI GGATC 1 cut(s) 440
AcoI YGGCCR 1 cut(s) 762
AcsI RAATTY 1 cut(s) 662
AcyI GRCGYC 1 cut(s) 441
AfaI GTAC 3 cut(s) 85, 590, 868
AfiI CCNNNNNNNGG 3 cut(s) 500, 599, 647
AflIII ACRYGT 1 cut(s) 687
AgeI ACCGGT 1 cut(s) 770
AgsI TTSAA 1 cut(s) 970
AjnI CCWGG 1 cut(s) 934
AjuI GAANNNNNNNTTGG 2 cut(s) 557, 589
AluBI AGCT 4 cut(s) 46, 262, 624, 722
AluI AGCT 4 cut(s) 46, 262, 624, 722
Alw26I GTCTC 3 cut(s) 234, 454, 761
AlwI GGATC 1 cut(s) 440
AoxI GGCC 4 cut(s) 192, 502, 762, 776
ApeKI GCWGC 2 cut(s) 262, 722
ApoI RAATTY 1 cut(s) 662
AsiGI ACCGGT 1 cut(s) 770
AspLEI GCGC 3 cut(s) 267, 655, 1011
AspS9I GGNCC 3 cut(s) 421, 502, 938
AsuC2I CCSGG 2 cut(s) 311, 859
AsuHPI GGTGA 3 cut(s) 532, 600, 755
AsuII TTCGAA 1 cut(s) 894
AvaII GGWCC 2 cut(s) 421, 938
BbsI GAAGAC 2 cut(s) 407, 474
BbvI GCAGC 2 cut(s) 249, 709
BccI CCATC 4 cut(s) 74, 236, 689, 697
BceAI ACGGC 2 cut(s) 261, 286
BciT130I CCWGG 1 cut(s) 936
BclI TGATCA 2 cut(s) 289, 840
BcnI CCSGG 2 cut(s) 311, 859
BcoDI GTCTC 3 cut(s) 234, 454, 761
BisI GCNGC 5 cut(s) 51, 263, 723, 762, 945
BlsI GCNGC 5 cut(s) 52, 264, 724, 763, 946
Bme1390I CCNGG 3 cut(s) 311, 859, 936
Bme18I GGWCC 2 cut(s) 421, 938
BmgT120I GGNCC 3 cut(s) 421, 502, 938
BmrFI CCNGG 3 cut(s) 311, 859, 936
BmrI ACTGGG 2 cut(s) 367, 791
BmsI GCATC 2 cut(s) 358, 867
BmuI ACTGGG 2 cut(s) 367, 791
BpiI GAAGAC 2 cut(s) 407, 474
BplI GAGNNNNNCTC 2 cut(s) 613, 645
Bpu14I TTCGAA 1 cut(s) 894
BpuEI CTTGAG 1 cut(s) 359
BpuMI CCSGG 2 cut(s) 311, 859
BsaBI GATNNNNATC 2 cut(s) 227, 527
BsaHI GRCGYC 1 cut(s) 441
BsaI GGTCTC 2 cut(s) 454, 761
BsaJI CCNNGG 3 cut(s) 336, 726, 945
BsaWI WCCGGW 4 cut(s) 514, 770, 885, 985
Bsc4I CCNNNNNNNGG 3 cut(s) 500, 599, 647
Bse118I RCCGGY 2 cut(s) 504, 770
Bse1I ACTGG 3 cut(s) 362, 673, 797
Bse3DI GCAATG 1 cut(s) 330
Bse8I GATNNNNATC 2 cut(s) 227, 527
BseBI CCWGG 1 cut(s) 936
BseDI CCNNGG 3 cut(s) 336, 726, 945
BseGI GGATG 2 cut(s) 228, 243
BseJI GATNNNNATC 2 cut(s) 227, 527
BseLI CCNNNNNNNGG 3 cut(s) 500, 599, 647
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 1 cut(s) 732
BseNI ACTGG 3 cut(s) 362, 673, 797
BseRI GAGGAG 3 cut(s) 11, 23, 26
BseX3I CGGCCG 1 cut(s) 762
BseXI GCAGC 2 cut(s) 249, 709
BseYI CCCAGC 2 cut(s) 494, 998
Bsh1236I CGCG 4 cut(s) 426, 710, 761, 947
Bsh1285I CGRYCG 1 cut(s) 765
BshFI GGCC 4 cut(s) 194, 504, 764, 778
BshTI ACCGGT 1 cut(s) 770
BsiEI CGRYCG 1 cut(s) 765
BsiSI CCGG 7 cut(s) 311, 505, 515, 771, 858, 886, 986
BslFI GGGAC 2 cut(s) 374, 377
BslI CCNNNNNNNGG 3 cut(s) 500, 599, 647
BsmAI GTCTC 3 cut(s) 234, 454, 761
BsmFI GGGAC 2 cut(s) 374, 377
BsnI GGCC 4 cut(s) 194, 504, 764, 778
Bso31I GGTCTC 2 cut(s) 454, 761
Bsp119I TTCGAA 1 cut(s) 894
Bsp143I GATC 4 cut(s) 289, 432, 756, 840
Bsp19I CCATGG 1 cut(s) 336
BspACI CCGC 9 cut(s) 51, 104, 270, 424, 491, 710, 761, 945, 947
BspANI GGCC 4 cut(s) 194, 504, 764, 778
BspCNI CTCAG 1 cut(s) 731
BspFNI CGCG 4 cut(s) 426, 710, 761, 947
BspPI GGATC 1 cut(s) 440
BspT104I TTCGAA 1 cut(s) 894
BspTNI GGTCTC 2 cut(s) 454, 761
BsrBI CCGCTC 1 cut(s) 272
BsrDI GCAATG 1 cut(s) 330
BsrFI RCCGGY 2 cut(s) 504, 770
BsrI ACTGG 3 cut(s) 362, 673, 797
BssAI RCCGGY 2 cut(s) 504, 770
BssECI CCNNGG 3 cut(s) 336, 726, 945
BssMI GATC 4 cut(s) 289, 432, 756, 840
BssNI GRCGYC 1 cut(s) 441
BssT1I CCWWGG 2 cut(s) 336, 726
Bst2UI CCWGG 1 cut(s) 936
Bst4CI ACNGT 2 cut(s) 83, 833
BstACI GRCGYC 1 cut(s) 441
BstBI TTCGAA 1 cut(s) 894
BstC8I GCNNGC 4 cut(s) 48, 274, 316, 787
BstDEI CTNAG 1 cut(s) 718
BstDSI CCRYGG 2 cut(s) 336, 945
BstEII GGTNACC 1 cut(s) 606
BstF5I GGATG 2 cut(s) 228, 243
BstFNI CGCG 4 cut(s) 426, 710, 761, 947
BstHHI GCGC 3 cut(s) 267, 655, 1011
BstKTI GATC 4 cut(s) 292, 435, 759, 843
BstMAI GTCTC 3 cut(s) 234, 454, 761
BstMBI GATC 4 cut(s) 289, 432, 756, 840
BstMCI CGRYCG 1 cut(s) 765
BstMWI GCNNNNNNNGC 5 cut(s) 56, 119, 273, 728, 877
BstNI CCWGG 1 cut(s) 936
BstNSI RCATGY 1 cut(s) 691
BstPI GGTNACC 1 cut(s) 606
BstSCI CCNGG 3 cut(s) 309, 857, 934
BstUI CGCG 4 cut(s) 426, 710, 761, 947
BstV1I GCAGC 2 cut(s) 249, 709
BstV2I GAAGAC 2 cut(s) 407, 474
BstXI CCANNNNNNTGG 1 cut(s) 935
BstZI CGGCCG 1 cut(s) 762
BsuRI GGCC 4 cut(s) 194, 504, 764, 778
BtgI CCRYGG 2 cut(s) 336, 945
BtsCI GGATG 2 cut(s) 228, 243
BtsIMutI CAGTG 2 cut(s) 355, 666
Cac8I GCNNGC 4 cut(s) 48, 274, 316, 787
CfoI GCGC 3 cut(s) 267, 655, 1011
Cfr10I RCCGGY 2 cut(s) 504, 770
Cfr13I GGNCC 3 cut(s) 421, 502, 938
Cfr42I CCGCGG 1 cut(s) 948
CseI GACGC 2 cut(s) 161, 716
CsiI ACCWGGT 1 cut(s) 934
Csp6I GTAC 3 cut(s) 84, 589, 867
CspAI ACCGGT 1 cut(s) 770
CviAII CATG 8 cut(s) 293, 337, 397, 475, 499, 577, 688, 979
CviQI GTAC 3 cut(s) 84, 589, 867
DdeI CTNAG 1 cut(s) 718
DpnI GATC 4 cut(s) 291, 434, 758, 842
DpnII GATC 4 cut(s) 289, 432, 756, 840
DrdI GACNNNNNNGTC 1 cut(s) 446
DseDI GACNNNNNNGTC 1 cut(s) 446
EaeI YGGCCR 1 cut(s) 762
EagI CGGCCG 1 cut(s) 762
EclXI CGGCCG 1 cut(s) 762
Eco130I CCWWGG 2 cut(s) 336, 726
Eco147I AGGCCT 1 cut(s) 194
Eco31I GGTCTC 2 cut(s) 454, 761
Eco47I GGWCC 2 cut(s) 421, 938
Eco52I CGGCCG 1 cut(s) 762
Eco91I GGTNACC 1 cut(s) 606
EcoO65I GGTNACC 1 cut(s) 606
EcoRII CCWGG 1 cut(s) 934
EcoT14I CCWWGG 2 cut(s) 336, 726
ErhI CCWWGG 2 cut(s) 336, 726
FaeI CATG 8 cut(s) 296, 340, 400, 478, 502, 580, 691, 982
FaqI GGGAC 2 cut(s) 374, 377
FatI CATG 8 cut(s) 292, 336, 396, 474, 498, 576, 687, 978
FauI CCCGC 2 cut(s) 111, 498
FbaI TGATCA 2 cut(s) 289, 840
Fnu4HI GCNGC 5 cut(s) 51, 263, 723, 762, 945
FokI GGATG 2 cut(s) 215, 230
Fsp4HI GCNGC 5 cut(s) 51, 263, 723, 762, 945
FspAI RTGCGCAY 1 cut(s) 654
FspI TGCGCA 3 cut(s) 266, 654, 1010
GlaI GCGC 3 cut(s) 266, 654, 1010
GluI GCNGC 5 cut(s) 51, 263, 723, 762, 945
GsaI CCCAGC 2 cut(s) 498, 1002
HaeIII GGCC 4 cut(s) 194, 504, 764, 778
HapII CCGG 7 cut(s) 311, 505, 515, 771, 858, 886, 986
HgaI GACGC 2 cut(s) 161, 716
HhaI GCGC 3 cut(s) 267, 655, 1011
Hin1I GRCGYC 1 cut(s) 441
Hin1II CATG 8 cut(s) 296, 340, 400, 478, 502, 580, 691, 982
Hin6I GCGC 3 cut(s) 265, 653, 1009
HinP1I GCGC 3 cut(s) 265, 653, 1009
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HinfI GANTC 6 cut(s) 382, 471, 523, 549, 854, 982
HpaI GTTAAC 1 cut(s) 583
HpaII CCGG 7 cut(s) 311, 505, 515, 771, 858, 886, 986
HphI GGTGA 3 cut(s) 532, 600, 755
Hpy166II GTNNAC 6 cut(s) 76, 583, 715, 751, 823, 991
Hpy188I TCNGA 4 cut(s) 470, 487, 548, 813
Hpy188III TCNNGA 4 cut(s) 247, 451, 532, 1029
Hpy8I GTNNAC 6 cut(s) 76, 583, 715, 751, 823, 991
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 3 cut(s) 38, 205, 789
HpyCH4III ACNGT 2 cut(s) 83, 833
HpyCH4IV ACGT 1 cut(s) 441
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 119, 273, 728, 877
HpyF3I CTNAG 1 cut(s) 718
HpySE526I ACGT 1 cut(s) 441
Hsp92I GRCGYC 1 cut(s) 441
Hsp92II CATG 8 cut(s) 296, 340, 400, 478, 502, 580, 691, 982
HspAI GCGC 3 cut(s) 265, 653, 1009
Ksp22I TGATCA 2 cut(s) 289, 840
KspAI GTTAAC 1 cut(s) 583
KspI CCGCGG 1 cut(s) 948
Kzo9I GATC 4 cut(s) 289, 432, 756, 840
LmnI GCTCC 1 cut(s) 549
Lsp1109I GCAGC 2 cut(s) 249, 709
LweI GCATC 2 cut(s) 358, 867
MabI ACCWGGT 1 cut(s) 934
MaeII ACGT 1 cut(s) 441
MaeIII GTNAC 2 cut(s) 606, 833
MalI GATC 4 cut(s) 291, 434, 758, 842
MbiI CCGCTC 1 cut(s) 272
MboI GATC 4 cut(s) 289, 432, 756, 840
MboII GAAGA 3 cut(s) 412, 474, 964
MfeI CAATTG 1 cut(s) 732
MluCI AATT 2 cut(s) 662, 732
MlyI GAGTC 2 cut(s) 863, 976
MmeI TCCRAC 1 cut(s) 510
MseI TTAA 2 cut(s) 582, 918
MslI CAYNNNNRTG 2 cut(s) 335, 686
MspA1I CMGCKG 2 cut(s) 722, 947
MspI CCGG 7 cut(s) 311, 505, 515, 771, 858, 886, 986
MspR9I CCNGG 3 cut(s) 311, 859, 936
MunI CAATTG 1 cut(s) 732
MvaI CCWGG 1 cut(s) 936
MvnI CGCG 4 cut(s) 426, 710, 761, 947
MwoI GCNNNNNNNGC 5 cut(s) 56, 119, 273, 728, 877
NciI CCSGG 2 cut(s) 311, 859
NcoI CCATGG 1 cut(s) 336
NdeII GATC 4 cut(s) 289, 432, 756, 840
NlaIII CATG 8 cut(s) 296, 340, 400, 478, 502, 580, 691, 982
NmeAIII GCCGAG 2 cut(s) 69, 790
NmuCI GTSAC 2 cut(s) 606, 833
NsbI TGCGCA 3 cut(s) 266, 654, 1010
NspI RCATGY 1 cut(s) 691
NspV TTCGAA 1 cut(s) 894
PceI AGGCCT 1 cut(s) 194
PciI ACATGT 1 cut(s) 687
PfeI GAWTC 4 cut(s) 382, 471, 523, 549
PflFI GACNNNGTC 2 cut(s) 155, 565
PfoI TCCNGGA 1 cut(s) 857
PinAI ACCGGT 1 cut(s) 770
PkrI GCNGC 5 cut(s) 52, 264, 724, 763, 946
PleI GAGTC 2 cut(s) 862, 976
PpsI GAGTC 2 cut(s) 862, 976
PscI ACATGT 1 cut(s) 687
Psp6I CCWGG 1 cut(s) 934
PspEI GGTNACC 1 cut(s) 606
PspFI CCCAGC 2 cut(s) 494, 998
PspGI CCWGG 1 cut(s) 934
PspPI GGNCC 3 cut(s) 421, 502, 938
PsyI GACNNNGTC 2 cut(s) 155, 565
PvuII CAGCTG 1 cut(s) 722
RsaI GTAC 3 cut(s) 85, 590, 868
RsaNI GTAC 3 cut(s) 84, 589, 867
RseI CAYNNNNRTG 2 cut(s) 335, 686
SacII CCGCGG 1 cut(s) 948
SaqAI TTAA 2 cut(s) 582, 918
SatI GCNGC 5 cut(s) 51, 263, 723, 762, 945
Sau3AI GATC 4 cut(s) 289, 432, 756, 840
Sau96I GGNCC 3 cut(s) 421, 502, 938
SchI GAGTC 2 cut(s) 863, 976
ScrFI CCNGG 3 cut(s) 311, 859, 936
SexAI ACCWGGT 1 cut(s) 934
SfaNI GCATC 2 cut(s) 358, 867
Sfr303I CCGCGG 1 cut(s) 948
SfuI TTCGAA 1 cut(s) 894
SgrBI CCGCGG 1 cut(s) 948
SinI GGWCC 2 cut(s) 421, 938
SmiMI CAYNNNNRTG 2 cut(s) 335, 686
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 2 cut(s) 662, 732
SseBI AGGCCT 1 cut(s) 194
SsiI CCGC 9 cut(s) 51, 104, 270, 424, 491, 710, 761, 945, 947
StuI AGGCCT 1 cut(s) 194
StyD4I CCNGG 3 cut(s) 309, 857, 934
StyI CCWWGG 2 cut(s) 336, 726
TaaI ACNGT 2 cut(s) 83, 833
TaiI ACGT 1 cut(s) 444
TaqI TCGA 5 cut(s) 150, 380, 452, 693, 894
TasI AATT 2 cut(s) 662, 732
TauI GCSGC 3 cut(s) 53, 764, 947
TfiI GAWTC 4 cut(s) 382, 471, 523, 549
Tru1I TTAA 2 cut(s) 582, 918
Tru9I TTAA 2 cut(s) 582, 918
TscAI CASTG 2 cut(s) 362, 673
TseFI GTSAC 2 cut(s) 606, 833
TseI GCWGC 2 cut(s) 262, 722
Tsp45I GTSAC 2 cut(s) 606, 833
TspDTI ATGAA 4 cut(s) 118, 413, 565, 936
TspGWI ACGGA 1 cut(s) 252
TspRI CASTG 2 cut(s) 362, 673
Tth111I GACNNNGTC 2 cut(s) 155, 565
VpaK11BI GGWCC 2 cut(s) 421, 938
XapI RAATTY 1 cut(s) 662
XceI RCATGY 1 cut(s) 691
XcmI CCANNNNNNNNNTGG 1 cut(s) 600
ZraI GACGTC 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.