Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8287615.1

Orthogroup ID

OG0003916

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 654

Gene Structure 653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8287615.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 653 bp

atggcagcagcaaccaagctcgtcctctcccttctcctctttcagctcgccaccaccgcctactccatcggcgtcaactacggcaccctcgccaacaacctccctcctcccgcccaggtcgccaacttcctcaagacccaaaccgtcattgacgccgtcaagatcttcgacgtcaaccccgagatcatcaaggccttcgctaactccggcatctccttaaccatcaccatccccaacggtgagatccccggcctcacgaacctagctggcgcccggcaatgggtcgtccagcacatcaagccgttctacccggccaccaagatcaagtacattcttatggggaacgaaatccttcactggggagatgatgctcagaaaaatggactagtccccgccatgaggcagctccacgctgctttgattcaagagggtattaaggacgttaaggtctctaccccacactccctcggaattatgctcgcgtctgaaccggccagcgctggccggttcaggcccgaagtgaccccgatcttgctagaccagctcaggttctgccgcgagaccaagtccccattcatgttcaacccctacccctacttcgggtggtcgcctcagaaggagaacttcgctttgttcagacccaacaagggcat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

217

Amino Acids

23.89

Weight (kDa)

9.46

Isoelectric Point (pI)

31.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55430
fragaria_vesca	FvH4_7g22480 FvH4_7g22494
malus_domestica	MD01G1134200.v1.1 MD07G1198400.v1.1 MD07G1198600.v1.1 MD07G1198700.v1.1
prunus_persica	Prupe.2G235400_v2.0.a1
pyrus_communis	pycom01g15500 pycom07g18550 pycom07g18560 pycom07g18600
rosa_chinensis	RchiOBHm_Chr1g0367091 RchiOBHm_Chr1g0367121
rosa_laevigata	RLG00000027296 RLG00000027300
rosa_multiflora	Rmu_co8239959.1_g000001 Rmu_co8287615.1_g000001 Rmu_sc0007424.1_g000003 Rmu_sc0007844.1_g000002
rosa_roxburghii	Rroxscaffold_4G00289610 Rroxscaffold_4G00289630
rosa_rugosa	Rorug01G0334300 Rorug01G0334700 Rorug01G0334800
rosa_samantha	Rh1AG341300 Rh1AG341500 Rh1BG302000 Rh1CG318000 Rh1CG318400 Rh1DG334200 Rh1DG334500
rosa_wichuraiana	Rw1G030320 Rw1G030350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	446
AatII	GACGTC	1 cut(s)	174
AccB1I	GGYRCC	2 cut(s)	83, 269
AccII	CGCG	2 cut(s)	482, 558
AciI	CCGC	4 cut(s)	57, 111, 393, 556
AclWI	GGATC	1 cut(s)	238
AcoI	YGGCCR	3 cut(s)	312, 492, 502
AcyI	GRCGYC	4 cut(s)	72, 153, 171, 270
AfaI	GTAC	1 cut(s)	329
AfeI	AGCGCT	1 cut(s)	499
AfiI	CCNNNNNNNGG	7 cut(s)	279, 280, 358, 399, 599, 600, 647
AgsI	TTSAA	2 cut(s)	425, 583
AhlI	ACTAGT	1 cut(s)	385
AjnI	CCWGG	1 cut(s)	114
AjuI	GAANNNNNNNTTGG	2 cut(s)	557, 589
AluBI	AGCT	5 cut(s)	19, 46, 266, 406, 544
AluI	AGCT	5 cut(s)	19, 46, 266, 406, 544
Alw26I	GTCTC	2 cut(s)	454, 554
AlwI	GGATC	1 cut(s)	238
AlwNI	CAGNNNCTG	1 cut(s)	552
Ama87I	CYCGRG	1 cut(s)	179
Aor51HI	AGCGCT	1 cut(s)	499
AoxI	GGCC	6 cut(s)	192, 250, 312, 492, 502, 512
ApeKI	GCWGC	4 cut(s)	5, 8, 403, 413
Asp700I	GAANNNNTTC	1 cut(s)	351
AspLEI	GCGC	2 cut(s)	272, 500
AspS9I	GGNCC	1 cut(s)	513
AsuC2I	CCSGG	3 cut(s)	249, 274, 311
AsuHPI	GGTGA	2 cut(s)	217, 251
AvaI	CYCGRG	1 cut(s)	179
BanI	GGYRCC	2 cut(s)	83, 269
BbvI	GCAGC	4 cut(s)	17, 20, 400, 415
BccI	CCATC	3 cut(s)	74, 230, 236
BceAI	ACGGC	3 cut(s)	97, 140, 286
BciT130I	CCWGG	1 cut(s)	116
BcnI	CCSGG	3 cut(s)	249, 274, 311
BcoDI	GTCTC	2 cut(s)	454, 554
BcuI	ACTAGT	1 cut(s)	385
BfaI	CTAG	3 cut(s)	263, 386, 536
BfoI	RGCGCY	2 cut(s)	273, 501
BglII	AGATCT	1 cut(s)	162
BisI	GCNGC	5 cut(s)	6, 9, 404, 414, 556
BlsI	GCNGC	5 cut(s)	7, 10, 405, 415, 557
Bme1390I	CCNGG	4 cut(s)	116, 249, 274, 311
BmeT110I	CYCGRG	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	513
BmiI	GGNNCC	2 cut(s)	85, 271
BmrFI	CCNGG	4 cut(s)	116, 249, 274, 311
BmrI	ACTGGG	1 cut(s)	367
BmsI	GCATC	2 cut(s)	219, 358
BmuI	ACTGGG	1 cut(s)	367
Bpu10I	CCTNAGC	1 cut(s)	545
BpuEI	CTTGAG	1 cut(s)	116
BpuMI	CCSGG	3 cut(s)	249, 274, 311
BsaHI	GRCGYC	4 cut(s)	72, 153, 171, 270
BsaI	GGTCTC	2 cut(s)	454, 554
BsaJI	CCNNGG	3 cut(s)	114, 247, 466
Bsc4I	CCNNNNNNNGG	7 cut(s)	279, 280, 358, 399, 599, 600, 647
Bse118I	RCCGGY	2 cut(s)	490, 504
Bse1I	ACTGG	1 cut(s)	362
Bse3DI	GCAATG	1 cut(s)	284
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	3 cut(s)	114, 247, 466
BseGI	GGATG	1 cut(s)	228
BseLI	CCNNNNNNNGG	7 cut(s)	279, 280, 358, 399, 599, 600, 647
BseMI	GCAATG	1 cut(s)	284
BseMII	CTCAG	3 cut(s)	386, 559, 626
BseNI	ACTGG	1 cut(s)	362
BseRI	GAGGAG	2 cut(s)	26, 96
BseXI	GCAGC	4 cut(s)	17, 20, 400, 415
Bsh1236I	CGCG	2 cut(s)	482, 558
BshFI	GGCC	6 cut(s)	194, 252, 314, 494, 504, 514
BshNI	GGYRCC	2 cut(s)	83, 269
BsiHKCI	CYCGRG	1 cut(s)	179
BsiSI	CCGG	6 cut(s)	207, 249, 274, 311, 491, 505
BslFI	GGGAC	2 cut(s)	374, 553
BslI	CCNNNNNNNGG	7 cut(s)	279, 280, 358, 399, 599, 600, 647
BsmAI	GTCTC	2 cut(s)	454, 554
BsmFI	GGGAC	2 cut(s)	374, 553
BsnI	GGCC	6 cut(s)	194, 252, 314, 494, 504, 514
Bso31I	GGTCTC	2 cut(s)	454, 554
BsoBI	CYCGRG	1 cut(s)	179
Bsp143I	GATC	5 cut(s)	162, 183, 243, 321, 528
BspACI	CCGC	4 cut(s)	57, 111, 393, 556
BspANI	GGCC	6 cut(s)	194, 252, 314, 494, 504, 514
BspCNI	CTCAG	3 cut(s)	385, 558, 625
BspFNI	CGCG	2 cut(s)	482, 558
BspLI	GGNNCC	2 cut(s)	85, 271
BspPI	GGATC	1 cut(s)	238
BspT107I	GGYRCC	2 cut(s)	83, 269
BspTNI	GGTCTC	2 cut(s)	454, 554
BsrDI	GCAATG	1 cut(s)	284
BsrFI	RCCGGY	2 cut(s)	490, 504
BsrI	ACTGG	1 cut(s)	362
BssAI	RCCGGY	2 cut(s)	490, 504
BssECI	CCNNGG	3 cut(s)	114, 247, 466
BssMI	GATC	5 cut(s)	162, 183, 243, 321, 528
BssNI	GRCGYC	4 cut(s)	72, 153, 171, 270
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	2 cut(s)	145, 239
BstACI	GRCGYC	4 cut(s)	72, 153, 171, 270
BstC8I	GCNNGC	5 cut(s)	48, 268, 480, 496, 502
BstDEI	CTNAG	3 cut(s)	372, 545, 612
BstF5I	GGATG	1 cut(s)	228
BstFNI	CGCG	2 cut(s)	482, 558
BstH2I	RGCGCY	2 cut(s)	273, 501
BstHHI	GCGC	2 cut(s)	272, 500
BstKTI	GATC	5 cut(s)	165, 186, 246, 324, 531
BstMAI	GTCTC	2 cut(s)	454, 554
BstMBI	GATC	5 cut(s)	162, 183, 243, 321, 528
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 119, 298, 541
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	4 cut(s)	114, 247, 272, 309
BstUI	CGCG	2 cut(s)	482, 558
BstV1I	GCAGC	4 cut(s)	17, 20, 400, 415
BstX2I	RGATCY	2 cut(s)	162, 243
BstYI	RGATCY	2 cut(s)	162, 243
BsuRI	GGCC	6 cut(s)	194, 252, 314, 494, 504, 514
BtsCI	GGATG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	355
Cac8I	GCNNGC	5 cut(s)	48, 268, 480, 496, 502
CaiI	CAGNNNCTG	1 cut(s)	552
CfoI	GCGC	2 cut(s)	272, 500
Cfr10I	RCCGGY	2 cut(s)	490, 504
Cfr13I	GGNCC	1 cut(s)	513
CseI	GACGC	3 cut(s)	61, 161, 471
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	2 cut(s)	397, 577
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	3 cut(s)	372, 545, 612
DinI	GGCGCC	1 cut(s)	271
DpnI	GATC	5 cut(s)	164, 185, 245, 323, 530
DpnII	GATC	5 cut(s)	162, 183, 243, 321, 528
DrdI	GACNNNNNNGTC	1 cut(s)	446
DseDI	GACNNNNNNGTC	1 cut(s)	446
EaeI	YGGCCR	3 cut(s)	312, 492, 502
Eco147I	AGGCCT	1 cut(s)	194
Eco31I	GGTCTC	2 cut(s)	454, 554
Eco47III	AGCGCT	1 cut(s)	499
Eco88I	CYCGRG	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	114
EgeI	GGCGCC	1 cut(s)	271
EheI	GGCGCC	1 cut(s)	271
FaeI	CATG	2 cut(s)	400, 580
FaiI	YATR	4 cut(s)	338, 398, 476, 578
FalI	AAGNNNNNCTT	2 cut(s)	608, 640
FaqI	GGGAC	2 cut(s)	374, 553
FatI	CATG	2 cut(s)	396, 576
FauI	CCCGC	2 cut(s)	118, 400
Fnu4HI	GCNGC	5 cut(s)	6, 9, 404, 414, 556
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	5 cut(s)	6, 9, 404, 414, 556
FspBI	CTAG	3 cut(s)	263, 386, 536
GlaI	GCGC	2 cut(s)	271, 499
GluI	GCNGC	5 cut(s)	6, 9, 404, 414, 556
HaeII	RGCGCY	2 cut(s)	273, 501
HaeIII	GGCC	6 cut(s)	194, 252, 314, 494, 504, 514
HapII	CCGG	6 cut(s)	207, 249, 274, 311, 491, 505
HgaI	GACGC	3 cut(s)	61, 161, 471
HhaI	GCGC	2 cut(s)	272, 500
Hin1I	GRCGYC	4 cut(s)	72, 153, 171, 270
Hin1II	CATG	2 cut(s)	400, 580
Hin6I	GCGC	2 cut(s)	270, 498
HinP1I	GCGC	2 cut(s)	270, 498
HincII	GTYRAC	2 cut(s)	76, 175
HindII	GTYRAC	2 cut(s)	76, 175
HinfI	GANTC	1 cut(s)	421
HpaII	CCGG	6 cut(s)	207, 249, 274, 311, 491, 505
HphI	GGTGA	2 cut(s)	217, 251
Hpy166II	GTNNAC	2 cut(s)	76, 175
Hpy188I	TCNGA	5 cut(s)	375, 470, 487, 615, 638
Hpy188III	TCNNGA	4 cut(s)	133, 160, 256, 425
Hpy8I	GTNNAC	2 cut(s)	76, 175
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	4 cut(s)	41, 205, 362, 610
HpyCH4III	ACNGT	2 cut(s)	145, 239
HpyCH4IV	ACGT	2 cut(s)	171, 441
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 119, 298, 541
HpyF3I	CTNAG	3 cut(s)	372, 545, 612
HpySE526I	ACGT	2 cut(s)	171, 441
Hsp92I	GRCGYC	4 cut(s)	72, 153, 171, 270
Hsp92II	CATG	2 cut(s)	400, 580
HspAI	GCGC	2 cut(s)	270, 498
KasI	GGCGCC	1 cut(s)	269
Kzo9I	GATC	5 cut(s)	162, 183, 243, 321, 528
LmnI	GCTCC	1 cut(s)	411
Lsp1109I	GCAGC	4 cut(s)	17, 20, 400, 415
LweI	GCATC	2 cut(s)	219, 358
MaeI	CTAG	3 cut(s)	263, 386, 536
MaeII	ACGT	2 cut(s)	171, 441
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	5 cut(s)	164, 185, 245, 323, 530
MboI	GATC	5 cut(s)	162, 183, 243, 321, 528
MboII	GAAGA	1 cut(s)	157
MflI	RGATCY	2 cut(s)	162, 243
MluCI	AATT	1 cut(s)	471
Mly113I	GGCGCC	1 cut(s)	270
MroXI	GAANNNNTTC	1 cut(s)	351
MseI	TTAA	3 cut(s)	218, 435, 444
MslI	CAYNNNNRTG	1 cut(s)	335
MspI	CCGG	6 cut(s)	207, 249, 274, 311, 491, 505
MspR9I	CCNGG	4 cut(s)	116, 249, 274, 311
MvaI	CCWGG	1 cut(s)	116
MvnI	CGCG	2 cut(s)	482, 558
MwoI	GCNNNNNNNGC	4 cut(s)	56, 119, 298, 541
NarI	GGCGCC	1 cut(s)	270
NciI	CCSGG	3 cut(s)	249, 274, 311
NdeII	GATC	5 cut(s)	162, 183, 243, 321, 528
NlaIII	CATG	2 cut(s)	400, 580
NlaIV	GGNNCC	2 cut(s)	85, 271
NmuCI	GTSAC	1 cut(s)	520
PceI	AGGCCT	1 cut(s)	194
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PdmI	GAANNNNTTC	1 cut(s)	351
PfeI	GAWTC	1 cut(s)	421
PflFI	GACNNNGTC	2 cut(s)	155, 565
PkrI	GCNGC	5 cut(s)	7, 10, 405, 415, 557
PluTI	GGCGCC	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	2 cut(s)	85, 271
PspPI	GGNCC	1 cut(s)	513
PstNI	CAGNNNCTG	1 cut(s)	552
PsuI	RGATCY	2 cut(s)	162, 243
PsyI	GACNNNGTC	2 cut(s)	155, 565
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	1 cut(s)	335
SaqAI	TTAA	3 cut(s)	218, 435, 444
SatI	GCNGC	5 cut(s)	6, 9, 404, 414, 556
Sau3AI	GATC	5 cut(s)	162, 183, 243, 321, 528
Sau96I	GGNCC	1 cut(s)	513
ScrFI	CCNGG	4 cut(s)	116, 249, 274, 311
SfaNI	GCATC	2 cut(s)	219, 358
SfoI	GGCGCC	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
SpeI	ACTAGT	1 cut(s)	385
Sse9I	AATT	1 cut(s)	471
SseBI	AGGCCT	1 cut(s)	194
SsiI	CCGC	4 cut(s)	57, 111, 393, 556
SspDI	GGCGCC	1 cut(s)	269
SspMI	CTAG	3 cut(s)	263, 386, 536
StuI	AGGCCT	1 cut(s)	194
StyD4I	CCNGG	4 cut(s)	114, 247, 272, 309
TaaI	ACNGT	2 cut(s)	145, 239
TaiI	ACGT	2 cut(s)	174, 444
TaqI	TCGA	1 cut(s)	168
TasI	AATT	1 cut(s)	471
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	1 cut(s)	558
TfiI	GAWTC	1 cut(s)	421
Tru1I	TTAA	3 cut(s)	218, 435, 444
Tru9I	TTAA	3 cut(s)	218, 435, 444
TscAI	CASTG	1 cut(s)	362
TseFI	GTSAC	1 cut(s)	520
TseI	GCWGC	4 cut(s)	5, 8, 403, 413
Tsp45I	GTSAC	1 cut(s)	520
TspDTI	ATGAA	1 cut(s)	565
TspRI	CASTG	1 cut(s)	362
Tth111I	GACNNNGTC	2 cut(s)	155, 565
XmnI	GAANNNNTTC	1 cut(s)	351
XspI	CTAG	3 cut(s)	263, 386, 536
ZraI	GACGTC	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.