Rh1CG318000

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Reverse (-)
59344993 .. 59350250
5258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG318000.1

Sequence Viewer

Length: 1032 bp
ATGGCAGCAGCAACCAAGCTCGTCCTCTCCCTTCTCCTCTTTCAGCTCGCCACCACCGCCTACTCCATCGGCGTCAACTACGGCACCCTCGCCAACAACCTCCCTCCTCCCGCCCAGGTCGTCAACTTCCTCAAGACCCAAACCGTCATTGACGCCGTCAAGATCTTCGACGTCAACCCCGAGATCATCAAGGCCTTCGCTAACTCCGGCATCTCCTTAACCATCACCATCCCCAACGGTGAGATCCCCGGCCTCACGAACCTAGCTGGGGCCCGGCAATGGGTCGTCCAGCACATCAAGCCGTTCTACCCGGCCACCAAGATCAAGTACATTCTTATGGGGAACGAAATCCTTCACTGGGGAGATGATGCTCAGAAAAATGGACTCGTCCCCGCCATGAGGCAGCTCCACGCTGCTTTGATTCAGGAGGGTATTAAGGATGTTAAGGTCTCTACCCCACATTCCCTCGGAATCATGCTCGCGTCTGAACCGGCCAGCGCTGGCCGGTTCAGGCCGGAAGTGACCCCGATCTTGCTAGACCAGCTCAGGTTCTGCCGCGAGACCAAGTCCCCATTCATGTTCAACCCCTACCCTTACTTCGGGTGGTCGCCTCAGAAGGAGAACTTCGCTTTGTTCAGACCCAACAAGGGCATTGTCGATCAGTACACCAAGAAATTGTACACCAACATGTTCGACAACTTGATGGACGCCGTTTACTCAGCTAGCAAGGCTATCGGGTTCACCGATATCGAGTTCGTGGCGGCCGAGACCGGCTGGCCTTCGGCTTGCGAGTTCCCGGTCTGCTCGGTTCAGAACGCCGTGGACTACAACGCGAACTTGATCAAGCACGTGAACTCCGGCAAGGGAACTCCTCTGATGCCTAACAGGAAGTTCGAGACTTACATCTTTGCCTTGTTCAATGAGAACGAGAAGCCCGGGCCCCTCGCCGAGAAGAACTGGGGGCTGTTCAAGCCTGACATGACTCCGGTTTACAATGCCGGTGTTATGCGAAACCAACAGGTTGGTTCTTAG

Protein Analysis

343

Amino Acids

37.98

Weight (kDa)

8.77

Isoelectric Point (pI)

24.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 23 - 332 1.3e-79 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 174
AccB1I GGYRCC 1 cut(s) 83
AccII CGCG 3 cut(s) 482, 558, 833
AciI CCGC 5 cut(s) 57, 111, 393, 556, 761
AclWI GGATC 1 cut(s) 238
AcoI YGGCCR 4 cut(s) 312, 492, 502, 762
AcvI CACGTG 1 cut(s) 850
AcyI GRCGYC 4 cut(s) 72, 153, 171, 708
AfaI GTAC 3 cut(s) 329, 665, 680
AfeI AGCGCT 1 cut(s) 499
AfiI CCNNNNNNNGG 7 cut(s) 268, 279, 280, 358, 399, 599, 647
AflIII ACRYGT 1 cut(s) 687
AgsI TTSAA 3 cut(s) 583, 919, 970
AjnI CCWGG 1 cut(s) 114
AjuI GAANNNNNNNTTGG 2 cut(s) 557, 589
AluBI AGCT 6 cut(s) 19, 46, 266, 406, 544, 722
AluI AGCT 6 cut(s) 19, 46, 266, 406, 544, 722
Alw26I GTCTC 4 cut(s) 454, 554, 761, 890
AlwI GGATC 1 cut(s) 238
AlwNI CAGNNNCTG 1 cut(s) 552
Ama87I CYCGRG 2 cut(s) 179, 935
Aor51HI AGCGCT 1 cut(s) 499
ApaI GGGCCC 2 cut(s) 274, 942
ApeKI GCWGC 4 cut(s) 5, 8, 403, 413
Asp700I GAANNNNTTC 1 cut(s) 351
AspLEI GCGC 1 cut(s) 500
AspS9I GGNCC 4 cut(s) 270, 271, 938, 939
AsuC2I CCSGG 6 cut(s) 249, 274, 311, 797, 936, 937
AsuHPI GGTGA 3 cut(s) 217, 251, 733
AsuNHI GCTAGC 1 cut(s) 722
AvaI CYCGRG 2 cut(s) 179, 935
BaeGI GKGCMC 2 cut(s) 274, 942
BanI GGYRCC 1 cut(s) 83
BanII GRGCYC 2 cut(s) 274, 942
BbrPI CACGTG 1 cut(s) 850
BbvI GCAGC 4 cut(s) 17, 20, 400, 415
BccI CCATC 4 cut(s) 74, 230, 236, 697
BceAI ACGGC 5 cut(s) 97, 140, 286, 695, 803
BcgI CGANNNNNNTGC 2 cut(s) 715, 749
BciT130I CCWGG 1 cut(s) 116
BclI TGATCA 1 cut(s) 840
BcnI CCSGG 6 cut(s) 249, 274, 311, 797, 936, 937
BcoDI GTCTC 4 cut(s) 454, 554, 761, 890
BfaI CTAG 3 cut(s) 263, 536, 723
BfoI RGCGCY 1 cut(s) 501
BglII AGATCT 1 cut(s) 162
BisI GCNGC 6 cut(s) 6, 9, 404, 414, 556, 762
BlsI GCNGC 6 cut(s) 7, 10, 405, 415, 557, 763
Bme1390I CCNGG 7 cut(s) 116, 249, 274, 311, 797, 936, 937
BmeT110I CYCGRG 2 cut(s) 179, 935
BmgT120I GGNCC 4 cut(s) 270, 271, 938, 939
BmiI GGNNCC 5 cut(s) 85, 271, 272, 940, 941
BmrFI CCNGG 7 cut(s) 116, 249, 274, 311, 797, 936, 937
BmrI ACTGGG 2 cut(s) 367, 967
BmsI GCATC 3 cut(s) 219, 358, 867
BmtI GCTAGC 1 cut(s) 726
BmuI ACTGGG 2 cut(s) 367, 967
Bpu10I CCTNAGC 1 cut(s) 545
BpuEI CTTGAG 1 cut(s) 116
BpuMI CCSGG 6 cut(s) 249, 274, 311, 797, 936, 937
BsaAI YACGTR 1 cut(s) 850
BsaHI GRCGYC 4 cut(s) 72, 153, 171, 708
BsaI GGTCTC 3 cut(s) 454, 554, 761
BsaJI CCNNGG 5 cut(s) 114, 247, 466, 819, 935
BsaWI WCCGGW 1 cut(s) 985
BsaXI ACNNNNNCTCC 2 cut(s) 839, 869
Bsc4I CCNNNNNNNGG 7 cut(s) 268, 279, 280, 358, 399, 599, 647
Bse118I RCCGGY 4 cut(s) 490, 504, 770, 998
Bse1I ACTGG 2 cut(s) 362, 962
Bse3DI GCAATG 1 cut(s) 284
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 5 cut(s) 114, 247, 466, 819, 935
BseGI GGATG 2 cut(s) 228, 445
BseLI CCNNNNNNNGG 7 cut(s) 268, 279, 280, 358, 399, 599, 647
BseMI GCAATG 1 cut(s) 284
BseMII CTCAG 4 cut(s) 386, 559, 626, 732
BseNI ACTGG 2 cut(s) 362, 962
BseRI GAGGAG 3 cut(s) 26, 96, 861
BseSI GKGCMC 2 cut(s) 274, 942
BseX3I CGGCCG 1 cut(s) 762
BseXI GCAGC 4 cut(s) 17, 20, 400, 415
BseYI CCCAGC 1 cut(s) 266
Bsh1236I CGCG 3 cut(s) 482, 558, 833
Bsh1285I CGRYCG 1 cut(s) 765
BshNI GGYRCC 1 cut(s) 83
BsiEI CGRYCG 1 cut(s) 765
BsiHKCI CYCGRG 2 cut(s) 179, 935
BslFI GGGAC 2 cut(s) 374, 553
BslI CCNNNNNNNGG 7 cut(s) 268, 279, 280, 358, 399, 599, 647
BsmAI GTCTC 4 cut(s) 454, 554, 761, 890
BsmFI GGGAC 2 cut(s) 374, 553
Bso31I GGTCTC 3 cut(s) 454, 554, 761
BsoBI CYCGRG 2 cut(s) 179, 935
Bsp120I GGGCCC 2 cut(s) 270, 938
Bsp1286I GDGCHC 2 cut(s) 274, 942
Bsp1407I TGTACA 1 cut(s) 678
Bsp143I GATC 7 cut(s) 162, 183, 243, 321, 528, 658, 840
BspACI CCGC 5 cut(s) 57, 111, 393, 556, 761
BspCNI CTCAG 4 cut(s) 385, 558, 625, 731
BspFNI CGCG 3 cut(s) 482, 558, 833
BspLI GGNNCC 5 cut(s) 85, 271, 272, 940, 941
BspOI GCTAGC 1 cut(s) 726
BspPI GGATC 1 cut(s) 238
BspT107I GGYRCC 1 cut(s) 83
BspTNI GGTCTC 3 cut(s) 454, 554, 761
BsrDI GCAATG 1 cut(s) 284
BsrFI RCCGGY 4 cut(s) 490, 504, 770, 998
BsrGI TGTACA 1 cut(s) 678
BsrI ACTGG 2 cut(s) 362, 962
BssAI RCCGGY 4 cut(s) 490, 504, 770, 998
BssECI CCNNGG 5 cut(s) 114, 247, 466, 819, 935
BssMI GATC 7 cut(s) 162, 183, 243, 321, 528, 658, 840
BssNI GRCGYC 4 cut(s) 72, 153, 171, 708
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 2 cut(s) 145, 239
BstACI GRCGYC 4 cut(s) 72, 153, 171, 708
BstAUI TGTACA 1 cut(s) 678
BstBAI YACGTR 1 cut(s) 850
BstC8I GCNNGC 7 cut(s) 48, 480, 496, 502, 724, 776, 787
BstDEI CTNAG 5 cut(s) 372, 545, 612, 718, 1029
BstDSI CCRYGG 1 cut(s) 819
BstF5I GGATG 2 cut(s) 228, 445
BstFNI CGCG 3 cut(s) 482, 558, 833
BstH2I RGCGCY 1 cut(s) 501
BstHHI GCGC 1 cut(s) 500
BstKTI GATC 7 cut(s) 165, 186, 246, 324, 531, 661, 843
BstMAI GTCTC 4 cut(s) 454, 554, 761, 890
BstMBI GATC 7 cut(s) 162, 183, 243, 321, 528, 658, 840
BstMCI CGRYCG 1 cut(s) 765
BstMWI GCNNNNNNNGC 5 cut(s) 56, 298, 541, 728, 970
BstNI CCWGG 1 cut(s) 116
BstNSI RCATGY 1 cut(s) 691
BstSCI CCNGG 7 cut(s) 114, 247, 272, 309, 795, 934, 935
BstSLI GKGCMC 2 cut(s) 274, 942
BstUI CGCG 3 cut(s) 482, 558, 833
BstV1I GCAGC 4 cut(s) 17, 20, 400, 415
BstX2I RGATCY 2 cut(s) 162, 243
BstXI CCANNNNNNTGG 1 cut(s) 1022
BstYI RGATCY 2 cut(s) 162, 243
BstZI CGGCCG 1 cut(s) 762
BtgI CCRYGG 1 cut(s) 819
BtsCI GGATG 2 cut(s) 228, 445
BtsIMutI CAGTG 1 cut(s) 355
Cac8I GCNNGC 7 cut(s) 48, 480, 496, 502, 724, 776, 787
CaiI CAGNNNCTG 1 cut(s) 552
CfoI GCGC 1 cut(s) 500
Cfr10I RCCGGY 4 cut(s) 490, 504, 770, 998
Cfr13I GGNCC 4 cut(s) 270, 271, 938, 939
Cfr9I CCCGGG 1 cut(s) 935
CseI GACGC 4 cut(s) 61, 161, 471, 716
Csp6I GTAC 3 cut(s) 328, 664, 679
CviAII CATG 5 cut(s) 397, 475, 577, 688, 979
CviQI GTAC 3 cut(s) 328, 664, 679
DdeI CTNAG 5 cut(s) 372, 545, 612, 718, 1029
DpnI GATC 7 cut(s) 164, 185, 245, 323, 530, 660, 842
DpnII GATC 7 cut(s) 162, 183, 243, 321, 528, 658, 840
EaeI YGGCCR 4 cut(s) 312, 492, 502, 762
EagI CGGCCG 1 cut(s) 762
EclXI CGGCCG 1 cut(s) 762
Eco147I AGGCCT 1 cut(s) 194
Eco24I GRGCYC 2 cut(s) 274, 942
Eco31I GGTCTC 3 cut(s) 454, 554, 761
Eco32I GATATC 1 cut(s) 748
Eco47III AGCGCT 1 cut(s) 499
Eco52I CGGCCG 1 cut(s) 762
Eco72I CACGTG 1 cut(s) 850
Eco88I CYCGRG 2 cut(s) 179, 935
EcoO109I RGGNCCY 2 cut(s) 270, 939
EcoRII CCWGG 1 cut(s) 114
EcoRV GATATC 1 cut(s) 748
EcoT38I GRGCYC 2 cut(s) 274, 942
FaeI CATG 5 cut(s) 400, 478, 580, 691, 982
FaiI YATR 7 cut(s) 338, 398, 476, 578, 689, 980, 1007
FalI AAGNNNNNCTT 2 cut(s) 608, 640
FaqI GGGAC 2 cut(s) 374, 553
FatI CATG 5 cut(s) 396, 474, 576, 687, 978
FauI CCCGC 2 cut(s) 118, 400
FbaI TGATCA 1 cut(s) 840
Fnu4HI GCNGC 6 cut(s) 6, 9, 404, 414, 556, 762
FokI GGATG 2 cut(s) 215, 452
FriOI GRGCYC 2 cut(s) 274, 942
Fsp4HI GCNGC 6 cut(s) 6, 9, 404, 414, 556, 762
FspBI CTAG 3 cut(s) 263, 536, 723
GlaI GCGC 1 cut(s) 499
GluI GCNGC 6 cut(s) 6, 9, 404, 414, 556, 762
GsaI CCCAGC 1 cut(s) 270
HaeII RGCGCY 1 cut(s) 501
HgaI GACGC 4 cut(s) 61, 161, 471, 716
HhaI GCGC 1 cut(s) 500
Hin1I GRCGYC 4 cut(s) 72, 153, 171, 708
Hin1II CATG 5 cut(s) 400, 478, 580, 691, 982
Hin6I GCGC 1 cut(s) 498
HinP1I GCGC 1 cut(s) 498
HincII GTYRAC 3 cut(s) 76, 124, 175
HindII GTYRAC 3 cut(s) 76, 124, 175
HinfI GANTC 4 cut(s) 384, 421, 471, 982
HphI GGTGA 3 cut(s) 217, 251, 733
Hpy188I TCNGA 7 cut(s) 375, 470, 487, 615, 638, 813, 876
Hpy188III TCNNGA 5 cut(s) 133, 160, 256, 425, 895
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 5 cut(s) 41, 205, 362, 610, 789
HpyCH4III ACNGT 2 cut(s) 145, 239
HpyCH4IV ACGT 2 cut(s) 171, 849
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 298, 541, 728, 970
HpyF3I CTNAG 5 cut(s) 372, 545, 612, 718, 1029
HpySE526I ACGT 2 cut(s) 171, 849
Hsp92I GRCGYC 4 cut(s) 72, 153, 171, 708
Hsp92II CATG 5 cut(s) 400, 478, 580, 691, 982
HspAI GCGC 1 cut(s) 498
Ksp22I TGATCA 1 cut(s) 840
Kzo9I GATC 7 cut(s) 162, 183, 243, 321, 528, 658, 840
LmnI GCTCC 1 cut(s) 411
Lsp1109I GCAGC 4 cut(s) 17, 20, 400, 415
LweI GCATC 3 cut(s) 219, 358, 867
MaeI CTAG 3 cut(s) 263, 536, 723
MaeII ACGT 2 cut(s) 171, 849
MaeIII GTNAC 1 cut(s) 520
MalI GATC 7 cut(s) 164, 185, 245, 323, 530, 660, 842
MboI GATC 7 cut(s) 162, 183, 243, 321, 528, 658, 840
MboII GAAGA 2 cut(s) 157, 964
MflI RGATCY 2 cut(s) 162, 243
MhlI GDGCHC 2 cut(s) 274, 942
MluCI AATT 1 cut(s) 674
MlyI GAGTC 2 cut(s) 378, 976
MroXI GAANNNNTTC 1 cut(s) 351
MseI TTAA 3 cut(s) 218, 435, 444
MslI CAYNNNNRTG 2 cut(s) 335, 686
MspR9I CCNGG 7 cut(s) 116, 249, 274, 311, 797, 936, 937
MvaI CCWGG 1 cut(s) 116
MvnI CGCG 3 cut(s) 482, 558, 833
MwoI GCNNNNNNNGC 5 cut(s) 56, 298, 541, 728, 970
NciI CCSGG 6 cut(s) 249, 274, 311, 797, 936, 937
NdeII GATC 7 cut(s) 162, 183, 243, 321, 528, 658, 840
NheI GCTAGC 1 cut(s) 722
NlaIII CATG 5 cut(s) 400, 478, 580, 691, 982
NlaIV GGNNCC 5 cut(s) 85, 271, 272, 940, 941
NmeAIII GCCGAG 2 cut(s) 790, 973
NmuCI GTSAC 1 cut(s) 520
NspI RCATGY 1 cut(s) 691
PceI AGGCCT 1 cut(s) 194
PciI ACATGT 1 cut(s) 687
PcsI WCGNNNNNNNCGW 3 cut(s) 177, 741, 762
PdmI GAANNNNTTC 1 cut(s) 351
PfeI GAWTC 2 cut(s) 421, 471
PflFI GACNNNGTC 2 cut(s) 155, 565
PkrI GCNGC 6 cut(s) 7, 10, 405, 415, 557, 763
PleI GAGTC 2 cut(s) 378, 976
PmaCI CACGTG 1 cut(s) 850
PmlI CACGTG 1 cut(s) 850
PpsI GAGTC 2 cut(s) 378, 976
Ppu21I YACGTR 1 cut(s) 850
PscI ACATGT 1 cut(s) 687
Psp6I CCWGG 1 cut(s) 114
PspCI CACGTG 1 cut(s) 850
PspFI CCCAGC 1 cut(s) 266
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 5 cut(s) 85, 271, 272, 940, 941
PspOMI GGGCCC 2 cut(s) 270, 938
PspPI GGNCC 4 cut(s) 270, 271, 938, 939
PstNI CAGNNNCTG 1 cut(s) 552
PsuI RGATCY 2 cut(s) 162, 243
PsyI GACNNNGTC 2 cut(s) 155, 565
RsaI GTAC 3 cut(s) 329, 665, 680
RsaNI GTAC 3 cut(s) 328, 664, 679
RseI CAYNNNNRTG 2 cut(s) 335, 686
SaqAI TTAA 3 cut(s) 218, 435, 444
SatI GCNGC 6 cut(s) 6, 9, 404, 414, 556, 762
Sau3AI GATC 7 cut(s) 162, 183, 243, 321, 528, 658, 840
Sau96I GGNCC 4 cut(s) 270, 271, 938, 939
SchI GAGTC 2 cut(s) 378, 976
ScrFI CCNGG 7 cut(s) 116, 249, 274, 311, 797, 936, 937
SduI GDGCHC 2 cut(s) 274, 942
SfaNI GCATC 3 cut(s) 219, 358, 867
SmaI CCCGGG 1 cut(s) 937
SmiMI CAYNNNNRTG 2 cut(s) 335, 686
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
SrfI GCCCGGGC 1 cut(s) 937
Sse9I AATT 1 cut(s) 674
SseBI AGGCCT 1 cut(s) 194
SsiI CCGC 5 cut(s) 57, 111, 393, 556, 761
SspMI CTAG 3 cut(s) 263, 536, 723
StuI AGGCCT 1 cut(s) 194
StyD4I CCNGG 7 cut(s) 114, 247, 272, 309, 795, 934, 935
TaaI ACNGT 2 cut(s) 145, 239
TaiI ACGT 2 cut(s) 174, 852
TaqI TCGA 5 cut(s) 168, 657, 693, 750, 894
TasI AATT 1 cut(s) 674
TatI WGTACW 3 cut(s) 327, 663, 678
TauI GCSGC 2 cut(s) 558, 764
TfiI GAWTC 2 cut(s) 421, 471
Tru1I TTAA 3 cut(s) 218, 435, 444
Tru9I TTAA 3 cut(s) 218, 435, 444
TscAI CASTG 1 cut(s) 362
TseFI GTSAC 1 cut(s) 520
TseI GCWGC 4 cut(s) 5, 8, 403, 413
Tsp45I GTSAC 1 cut(s) 520
TspDTI ATGAA 1 cut(s) 565
TspMI CCCGGG 1 cut(s) 935
TspRI CASTG 1 cut(s) 362
Tth111I GACNNNGTC 2 cut(s) 155, 565
XceI RCATGY 1 cut(s) 691
XmaI CCCGGG 1 cut(s) 935
XmnI GAANNNNTTC 1 cut(s) 351
XspI CTAG 3 cut(s) 263, 536, 723
ZraI GACGTC 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.