Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004784

Physical Location & Seq

Genomic Coordinates Forward (+)

28707465 .. 28713681

Gene Structure 6217 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1207800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTGGCCTTCGTATTTTTTATTCAATAAGATTCTTAAGACAGAAGATGAAGGTGTATCAAATGGAGAACATTCAGGCATGGTAGAACCCTACCCATGTGAACAGCCGTTGCCCTGCTCGCACTTTGTTGAAGTCCCGCACATAAACCAGCAAGATTCTTGGGATTGCGGCCTCGCCTGCGTTCTTATGGTCTTTCGGACCCTTGGCATAGACAACTGCGATATTCAGACATTGGCAGAGCTATGTCACACAAATAGCATTTGGACCGTTGATCTAGCATTTTTACTACGGAAGTTCTCTATTAGTTTTTCCTACTTCACAGTGACATTTGGAGCAAACCCTAATTATTCTGGCGAGACATTTTATAAGCAATTACCTAATGATCTGGAGCGAGTTGATAATCTATTTCAAAAAGCACTAGAAGCCGGAATTAATATACAGCGCAGATCAATCAGTCGAGAAGAAATTTGTTTTTCGATTTTGTCTGGGAAATACATTGCCATTGTTTTGGTTGATCAGTATAAATTGAGGTCTTCTCCGGACGATGTTTTCGTCTCAGACTATTGTGTAAGCAACTCTGGTTACACAGGTCACTATGTCGTCATATGTGGGTATGACACTACTGCAGATGAGTTTGAAATTAGAGATCCGGCCTGTTCAAGGAAAAATGAGAGGATCTCCTCAACGTGCTTAGAAGAAGCCCGCAAATCCTTTGGTACCGATGAGGATCTTCTCTTGATATCTCTGAAGAAGAGTGGGAAGCAAAATCGCCCGGGAACACACCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Guanylate_cyc_2

Protein Analysis

263

Amino Acids

29.73

Weight (kDa)

5.01

Isoelectric Point (pI)

41.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C39_2	PF13529	44 - 218	5.8e-08	Peptidase_C39 like family
Guanylate_cyc_2	PF09778	45 - 247	4.6e-72	Guanylylate cyclase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05930 AT5G05930 AT5G05930 AT5G05930 AT5G05930 AT5G05930 AT5G05930
fragaria_vesca	FvH4_7g23620 FvH4_7g23620 FvH4_7g23620 FvH4_7g23620 FvH4_7g23620 FvH4_7g23620 FvH4_7g23620
malus_domestica	MD01G1142100.v1.1 MD07G1207800.v1.1
prunus_persica	Prupe.2G243100_v2.0.a1 Prupe.2G243100_v2.0.a1
pyrus_communis	pycom01g16230 pycom07g19330
rosa_chinensis	RchiOBHm_Chr1g0368881
rosa_laevigata	RLG00000027180
rosa_multiflora	Rmu_sc0004250.1_g000049
rosa_roxburghii	Rroxscaffold_4G00288240
rosa_rugosa	Rorug01G0345400 Rorug01G0345500
rosa_samantha	Rh1AG352600 Rh1BG316100 Rh1CG330800 Rh1DG347600
rosa_wichuraiana	Rw0G010000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	366
Acc65I	GGTACC	1 cut(s)	716
AccB1I	GGYRCC	1 cut(s)	716
AccIII	TCCGGA	1 cut(s)	538
AciI	CCGC	3 cut(s)	137, 168, 703
AclWI	GGATC	3 cut(s)	641, 683, 735
AcsI	RAATTY	1 cut(s)	465
AcuI	CTGAAG	1 cut(s)	767
AfaI	GTAC	1 cut(s)	718
AfiI	CCNNNNNNNGG	1 cut(s)	660
AflII	CTTAAG	1 cut(s)	35
AgsI	TTSAA	5 cut(s)	25, 131, 410, 638, 660
AleI	CACNNNNGTG	1 cut(s)	784
AluBI	AGCT	1 cut(s)	241
AluI	AGCT	1 cut(s)	241
Alw26I	GTCTC	2 cut(s)	350, 559
AlwI	GGATC	3 cut(s)	641, 683, 735
Ama87I	CYCGRG	1 cut(s)	772
Aor13HI	TCCGGA	1 cut(s)	538
AoxI	GGCC	3 cut(s)	5, 169, 651
ApoI	RAATTY	1 cut(s)	465
ArsI	GACNNNNNNTTYG	2 cut(s)	533, 565
AseI	ATTAAT	1 cut(s)	432
Asp718I	GGTACC	1 cut(s)	716
AspLEI	GCGC	1 cut(s)	444
AspS9I	GGNCC	2 cut(s)	198, 264
AsuC2I	CCSGG	2 cut(s)	773, 774
AvaI	CYCGRG	1 cut(s)	772
AvaII	GGWCC	2 cut(s)	198, 264
BanI	GGYRCC	1 cut(s)	716
BbsI	GAAGAC	1 cut(s)	525
BceAI	ACGGC	1 cut(s)	91
BclI	TGATCA	1 cut(s)	514
BcnI	CCSGG	2 cut(s)	773, 774
BcoDI	GTCTC	2 cut(s)	350, 559
BfaI	CTAG	2 cut(s)	275, 419
BfmI	CTRYAG	1 cut(s)	624
BfrI	CTTAAG	1 cut(s)	35
BisI	GCNGC	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	170
Bme1390I	CCNGG	2 cut(s)	773, 774
Bme18I	GGWCC	2 cut(s)	198, 264
BmeT110I	CYCGRG	1 cut(s)	772
BmgT120I	GGNCC	2 cut(s)	198, 264
BmiI	GGNNCC	2 cut(s)	200, 718
BmrFI	CCNGG	2 cut(s)	773, 774
BpiI	GAAGAC	1 cut(s)	525
BplI	GAGNNNNNCTC	4 cut(s)	520, 552, 662, 694
BpmI	CTGGAG	1 cut(s)	407
BpuMI	CCSGG	2 cut(s)	773, 774
BsaBI	GATNNNNATC	1 cut(s)	726
BsaJI	CCNNGG	2 cut(s)	202, 772
BsaWI	WCCGGW	1 cut(s)	538
Bsc4I	CCNNNNNNNGG	1 cut(s)	660
Bse1I	ACTGG	1 cut(s)	784
Bse3DI	GCAATG	1 cut(s)	495
Bse8I	GATNNNNATC	1 cut(s)	726
BseAI	TCCGGA	1 cut(s)	538
BseDI	CCNNGG	2 cut(s)	202, 772
BseJI	GATNNNNATC	1 cut(s)	726
BseLI	CCNNNNNNNGG	1 cut(s)	660
BseMI	GCAATG	1 cut(s)	495
BseMII	CTCAG	1 cut(s)	570
BseNI	ACTGG	1 cut(s)	784
BseRI	GAGGAG	1 cut(s)	670
BshFI	GGCC	3 cut(s)	7, 171, 653
BshNI	GGYRCC	1 cut(s)	716
BsiHKCI	CYCGRG	1 cut(s)	772
BsiSI	CCGG	4 cut(s)	426, 539, 650, 773
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	660
BsmAI	GTCTC	2 cut(s)	350, 559
BsmBI	CGTCTC	1 cut(s)	559
BsmFI	GGGAC	1 cut(s)	119
BsnI	GGCC	3 cut(s)	7, 171, 653
BsoBI	CYCGRG	1 cut(s)	772
Bsp13I	TCCGGA	1 cut(s)	538
Bsp143I	GATC	7 cut(s)	271, 382, 446, 514, 646, 675, 727
BspACI	CCGC	3 cut(s)	137, 168, 703
BspANI	GGCC	3 cut(s)	7, 171, 653
BspCNI	CTCAG	1 cut(s)	569
BspEI	TCCGGA	1 cut(s)	538
BspLI	GGNNCC	2 cut(s)	200, 718
BspMAI	CTGCAG	1 cut(s)	628
BspPI	GGATC	3 cut(s)	641, 683, 735
BspT107I	GGYRCC	1 cut(s)	716
BspTI	CTTAAG	1 cut(s)	35
BsrDI	GCAATG	1 cut(s)	495
BsrI	ACTGG	1 cut(s)	784
BssECI	CCNNGG	2 cut(s)	202, 772
BssMI	GATC	7 cut(s)	271, 382, 446, 514, 646, 675, 727
BssT1I	CCWWGG	1 cut(s)	202
Bst4CI	ACNGT	2 cut(s)	268, 322
Bst6I	CTCTTC	1 cut(s)	746
BstAFI	CTTAAG	1 cut(s)	35
BstC8I	GCNNGC	3 cut(s)	119, 178, 703
BstDEI	CTNAG	2 cut(s)	556, 691
BstENI	CCTNNNNNAGG	1 cut(s)	658
BstHHI	GCGC	1 cut(s)	444
BstKTI	GATC	7 cut(s)	274, 385, 449, 517, 649, 678, 730
BstMAI	GTCTC	2 cut(s)	350, 559
BstMBI	GATC	7 cut(s)	271, 382, 446, 514, 646, 675, 727
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 177, 422
BstSCI	CCNGG	2 cut(s)	771, 772
BstSFI	CTRYAG	1 cut(s)	624
BstV2I	GAAGAC	1 cut(s)	525
BstX2I	RGATCY	3 cut(s)	646, 675, 727
BstXI	CCANNNNNNTGG	1 cut(s)	508
BstYI	RGATCY	3 cut(s)	646, 675, 727
BsuRI	GGCC	3 cut(s)	7, 171, 653
BtsIMutI	CAGTG	1 cut(s)	327
Cac8I	GCNNGC	3 cut(s)	119, 178, 703
CfoI	GCGC	1 cut(s)	444
Cfr13I	GGNCC	2 cut(s)	198, 264
Cfr9I	CCCGGG	1 cut(s)	772
Csp6I	GTAC	1 cut(s)	717
CviAII	CATG	2 cut(s)	79, 96
CviJI	RGCY	7 cut(s)	7, 106, 171, 241, 425, 653, 701
CviKI_1	RGCY	7 cut(s)	7, 106, 171, 241, 425, 653, 701
CviQI	GTAC	1 cut(s)	717
DdeI	CTNAG	2 cut(s)	556, 691
DpnI	GATC	7 cut(s)	273, 384, 448, 516, 648, 677, 729
DpnII	GATC	7 cut(s)	271, 382, 446, 514, 646, 675, 727
Eam1104I	CTCTTC	1 cut(s)	746
EarI	CTCTTC	1 cut(s)	746
Eco130I	CCWWGG	1 cut(s)	202
Eco32I	GATATC	1 cut(s)	741
Eco47I	GGWCC	2 cut(s)	198, 264
Eco57I	CTGAAG	1 cut(s)	767
Eco88I	CYCGRG	1 cut(s)	772
EcoNI	CCTNNNNNAGG	1 cut(s)	658
EcoRV	GATATC	1 cut(s)	741
EcoT14I	CCWWGG	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	202
Esp3I	CGTCTC	1 cut(s)	559
FaeI	CATG	2 cut(s)	82, 99
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	2 cut(s)	78, 95
FauI	CCCGC	2 cut(s)	144, 710
FauNDI	CATATG	1 cut(s)	605
FbaI	TGATCA	1 cut(s)	514
Fnu4HI	GCNGC	1 cut(s)	169
Fsp4HI	GCNGC	1 cut(s)	169
FspBI	CTAG	2 cut(s)	275, 419
GlaI	GCGC	1 cut(s)	443
GluI	GCNGC	1 cut(s)	169
GsuI	CTGGAG	1 cut(s)	407
HaeIII	GGCC	3 cut(s)	7, 171, 653
HapII	CCGG	4 cut(s)	426, 539, 650, 773
HhaI	GCGC	1 cut(s)	444
Hin1II	CATG	2 cut(s)	82, 99
Hin6I	GCGC	1 cut(s)	442
HinP1I	GCGC	1 cut(s)	442
HinfI	GANTC	2 cut(s)	31, 155
HpaII	CCGG	4 cut(s)	426, 539, 650, 773
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	4 cut(s)	198, 228, 559, 747
Hpy188III	TCNNGA	4 cut(s)	386, 458, 539, 736
Hpy8I	GTNNAC	1 cut(s)	101
HpyAV	CCTTC	2 cut(s)	18, 44
HpyCH4III	ACNGT	2 cut(s)	268, 322
HpyCH4IV	ACGT	1 cut(s)	686
HpyCH4V	TGCA	1 cut(s)	626
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 177, 422
HpyF3I	CTNAG	2 cut(s)	556, 691
HpySE526I	ACGT	1 cut(s)	686
Hsp92II	CATG	2 cut(s)	82, 99
HspAI	GCGC	1 cut(s)	442
Kpn2I	TCCGGA	1 cut(s)	538
KpnI	GGTACC	1 cut(s)	720
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	7 cut(s)	271, 382, 446, 514, 646, 675, 727
LmnI	GCTCC	2 cut(s)	332, 388
MaeI	CTAG	2 cut(s)	275, 419
MaeII	ACGT	1 cut(s)	686
MaeIII	GTNAC	4 cut(s)	245, 322, 581, 590
MalI	GATC	7 cut(s)	273, 384, 448, 516, 648, 677, 729
MboI	GATC	7 cut(s)	271, 382, 446, 514, 646, 675, 727
MboII	GAAGA	7 cut(s)	56, 473, 525, 707, 722, 760, 763
MflI	RGATCY	3 cut(s)	646, 675, 727
MluCI	AATT	6 cut(s)	343, 371, 429, 465, 524, 639
MnlI	CCTC	5 cut(s)	182, 522, 666, 691, 718
MroI	TCCGGA	1 cut(s)	538
MseI	TTAA	2 cut(s)	36, 432
MslI	CAYNNNNRTG	1 cut(s)	784
MspCI	CTTAAG	1 cut(s)	35
MspI	CCGG	4 cut(s)	426, 539, 650, 773
MspR9I	CCNGG	2 cut(s)	773, 774
MwoI	GCNNNNNNNGC	3 cut(s)	118, 177, 422
NciI	CCSGG	2 cut(s)	773, 774
NdeI	CATATG	1 cut(s)	605
NdeII	GATC	7 cut(s)	271, 382, 446, 514, 646, 675, 727
NlaIII	CATG	2 cut(s)	82, 99
NlaIV	GGNNCC	2 cut(s)	200, 718
NmuCI	GTSAC	3 cut(s)	245, 322, 590
OliI	CACNNNNGTG	1 cut(s)	784
PcsI	WCGNNNNNNNCGW	1 cut(s)	549
PfeI	GAWTC	2 cut(s)	31, 155
PkrI	GCNGC	1 cut(s)	170
PshBI	ATTAAT	1 cut(s)	432
PsiI	TTATAA	1 cut(s)	366
PspN4I	GGNNCC	2 cut(s)	200, 718
PspPI	GGNCC	2 cut(s)	198, 264
PstI	CTGCAG	1 cut(s)	628
PsuI	RGATCY	3 cut(s)	646, 675, 727
RsaI	GTAC	1 cut(s)	718
RsaNI	GTAC	1 cut(s)	717
RseI	CAYNNNNRTG	1 cut(s)	784
SaqAI	TTAA	2 cut(s)	36, 432
SatI	GCNGC	1 cut(s)	169
Sau3AI	GATC	7 cut(s)	271, 382, 446, 514, 646, 675, 727
Sau96I	GGNCC	2 cut(s)	198, 264
ScrFI	CCNGG	2 cut(s)	773, 774
SetI	ASST	6 cut(s)	55, 243, 379, 533, 592, 689
SfcI	CTRYAG	1 cut(s)	624
SinI	GGWCC	2 cut(s)	198, 264
SmaI	CCCGGG	1 cut(s)	774
SmiMI	CAYNNNNRTG	1 cut(s)	784
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	6 cut(s)	343, 371, 429, 465, 524, 639
SsiI	CCGC	3 cut(s)	137, 168, 703
SspMI	CTAG	2 cut(s)	275, 419
StyD4I	CCNGG	2 cut(s)	771, 772
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	2 cut(s)	268, 322
TaiI	ACGT	1 cut(s)	689
TaqI	TCGA	2 cut(s)	457, 476
TasI	AATT	6 cut(s)	343, 371, 429, 465, 524, 639
TauI	GCSGC	1 cut(s)	171
TfiI	GAWTC	2 cut(s)	31, 155
Tru1I	TTAA	2 cut(s)	36, 432
Tru9I	TTAA	2 cut(s)	36, 432
TscAI	CASTG	1 cut(s)	327
TseFI	GTSAC	3 cut(s)	245, 322, 590
Tsp45I	GTSAC	3 cut(s)	245, 322, 590
TspDTI	ATGAA	1 cut(s)	63
TspGWI	ACGGA	1 cut(s)	304
TspMI	CCCGGG	1 cut(s)	772
TspRI	CASTG	1 cut(s)	327
Vha464I	CTTAAG	1 cut(s)	35
VpaK11BI	GGWCC	2 cut(s)	198, 264
VspI	ATTAAT	1 cut(s)	432
XagI	CCTNNNNNAGG	1 cut(s)	658
XapI	RAATTY	1 cut(s)	465
XmaI	CCCGGG	1 cut(s)	772
XspI	CTAG	2 cut(s)	275, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.