Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004784

Physical Location & Seq

Genomic Coordinates Forward (+)

46296764 .. 46303333

Gene Structure 6570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0345500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGACGAGCTCCGCATTGCAGGCTTCCCTAAACATTTCATTTGGTGTTGGTGGAGGCTTTATTTTGCTGGCTGCTGGACTTCTTTTGGTACATTGCACATTAAAGAGAAGAAAATTCATCAAGAAAGAAAGAGAAACCCAACGCAACGCTGACTTTGGGTCAGTTAATGCTGCGGATAGATACAAGAATTATGATCTGAATGAGAGAGAAATTACAATCTTTACTGTAGAAGAACTTATGGAGGCAACAAACGGTTTTAGTGAGAGTAAAAAAATTGGTACAGGAGCCTATGGACCAGTTTACATGGGAACACTAGCATGTAAAACAATGGTCGCCATAAAGAAGTGGAAAGTTTATGCTAACATATCTTTGGATGACGTGACGGCTCTTTCTCAGATCAACCACAAAAATGTGGTGAAGCTATTAGGGTGTTGTTTATTGACAAAATACCCTTTACTGGTTTATGAGTACTTCAACAGTGCAACTCTTTCTGAGCTCATTCAGAGAAAGGGGTCCTCACCATTGTCGTGGGAACTGCGAATGAAGATAGCTGTCCAATCCGCAACTGCACTGGCATACTTACACTCCTCCACTTCCAAGCCAAATATCATACACCGACATTTAAAGGCAACGAATATACTTTTAGATGATAATTACATGGTGAAACTGTCAGGCTCCGGAATTTCACCAGTCCGGATACTAGCACAAGTGACATTTGGATACTTAGATCCTATATCTATTCGAACACACCAAATAACAGAAAAAAGCGACGTGTTCAGCTTCGGAGTTGTCCTTGTGGAATTACTAACGAGCAGAAGCGCTACTTATTATGAGAAGTACTTTAAAAAGAGATACCTGGTATGGGACTTTGCTGATGCAATGGACAACGGTCACTTGCATCAAATTCTTGATTATAAAATTCTCGGCTTTTTTGAAAACATACGGATGGTGGAAAGAGTGGCGTATTTGGCATATAGGTGTATAAGGCCAGAAGATCATGAATTCAAAAGGCCTTCCATGAAAGAAGTTGCTATGGAACTCGAGGGATTGCGAATCAAAGGGAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Guanylate_cyc_2

Protein Analysis

356

Amino Acids

40.36

Weight (kDa)

9.24

Isoelectric Point (pI)

37.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	87 - 276	2e-29	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	89 - 278	5.4e-34	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05930 AT5G05930 AT5G05930 AT5G05930 AT5G05930 AT5G05930 AT5G05930
fragaria_vesca	FvH4_7g23620 FvH4_7g23620 FvH4_7g23620 FvH4_7g23620 FvH4_7g23620 FvH4_7g23620 FvH4_7g23620
malus_domestica	MD01G1142100.v1.1 MD07G1207800.v1.1
prunus_persica	Prupe.2G243100_v2.0.a1 Prupe.2G243100_v2.0.a1
pyrus_communis	pycom01g16230 pycom07g19330
rosa_chinensis	RchiOBHm_Chr1g0368881
rosa_laevigata	RLG00000027180
rosa_multiflora	Rmu_sc0004250.1_g000049
rosa_roxburghii	Rroxscaffold_4G00288240
rosa_rugosa	Rorug01G0345400 Rorug01G0345500
rosa_samantha	Rh1AG352600 Rh1BG316100 Rh1CG330800 Rh1DG347600
rosa_wichuraiana	Rw0G010000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	915
AccIII	TCCGGA	2 cut(s)	677, 693
AciI	CCGC	3 cut(s)	12, 173, 561
AclWI	GGATC	1 cut(s)	722
AcsI	RAATTY	5 cut(s)	113, 681, 903, 918, 1001
AfaI	GTAC	4 cut(s)	90, 280, 470, 839
AfeI	AGCGCT	1 cut(s)	820
AfiI	CCNNNNNNNGG	2 cut(s)	457, 862
AflIII	ACRYGT	1 cut(s)	771
AgsI	TTSAA	3 cut(s)	475, 935, 1006
AhdI	GACNNNNNGTC	1 cut(s)	157
AjiI	CACGTC	2 cut(s)	379, 772
AjnI	CCWGG	1 cut(s)	855
AluBI	AGCT	5 cut(s)	9, 421, 496, 551, 780
AluI	AGCT	5 cut(s)	9, 421, 496, 551, 780
Alw21I	GWGCWC	2 cut(s)	11, 498
AlwI	GGATC	1 cut(s)	722
Ama87I	CYCGRG	1 cut(s)	1040
Aor13HI	TCCGGA	2 cut(s)	677, 693
Aor51HI	AGCGCT	1 cut(s)	820
AoxI	GGCC	2 cut(s)	986, 1010
ApeKI	GCWGC	2 cut(s)	71, 170
ApoI	RAATTY	5 cut(s)	113, 681, 903, 918, 1001
AspLEI	GCGC	1 cut(s)	821
AspS9I	GGNCC	2 cut(s)	293, 513
AsuHPI	GGTGA	4 cut(s)	427, 510, 673, 678
AsuII	TTCGAA	1 cut(s)	742
AvaI	CYCGRG	1 cut(s)	1040
AvaII	GGWCC	2 cut(s)	293, 513
BanII	GRGCYC	2 cut(s)	11, 498
Bbv12I	GWGCWC	2 cut(s)	11, 498
BbvI	GCAGC	2 cut(s)	58, 157
BccI	CCATC	1 cut(s)	940
BceAI	ACGGC	1 cut(s)	399
BciT130I	CCWGG	1 cut(s)	857
BciVI	GTATCC	2 cut(s)	690, 713
BfaI	CTAG	2 cut(s)	314, 701
BfmI	CTRYAG	1 cut(s)	225
BfoI	RGCGCY	1 cut(s)	822
BfuI	GTATCC	2 cut(s)	690, 713
BisI	GCNGC	2 cut(s)	72, 171
BlsI	GCNGC	2 cut(s)	73, 172
BmcAI	AGTACT	2 cut(s)	470, 839
Bme1390I	CCNGG	1 cut(s)	857
Bme18I	GGWCC	2 cut(s)	293, 513
BmeRI	GACNNNNNGTC	1 cut(s)	157
BmeT110I	CYCGRG	1 cut(s)	1040
BmgBI	CACGTC	2 cut(s)	379, 772
BmgT120I	GGNCC	2 cut(s)	293, 513
BmiI	GGNNCC	3 cut(s)	286, 514, 676
BmrFI	CCNGG	1 cut(s)	857
BmsI	GCATC	2 cut(s)	865, 907
BoxI	GACNNNNGTC	1 cut(s)	888
Bpu14I	TTCGAA	1 cut(s)	742
BsaWI	WCCGGW	2 cut(s)	677, 693
BsaXI	ACNNNNNCTCC	2 cut(s)	569, 599
Bsc4I	CCNNNNNNNGG	2 cut(s)	457, 862
Bse1I	ACTGG	4 cut(s)	296, 462, 576, 689
Bse3DI	GCAATG	3 cut(s)	14, 91, 885
BseAI	TCCGGA	2 cut(s)	677, 693
BseBI	CCWGG	1 cut(s)	857
BseGI	GGATG	2 cut(s)	379, 951
BseLI	CCNNNNNNNGG	2 cut(s)	457, 862
BseMI	GCAATG	3 cut(s)	14, 91, 885
BseMII	CTCAG	2 cut(s)	407, 483
BseNI	ACTGG	4 cut(s)	296, 462, 576, 689
BseRI	GAGGAG	1 cut(s)	577
BseXI	GCAGC	2 cut(s)	58, 157
BsgI	GTGCAG	1 cut(s)	552
BshFI	GGCC	2 cut(s)	988, 1012
BsiHKAI	GWGCWC	2 cut(s)	11, 498
BsiHKCI	CYCGRG	1 cut(s)	1040
BsiSI	CCGG	2 cut(s)	678, 694
BslFI	GGGAC	1 cut(s)	878
BslI	CCNNNNNNNGG	2 cut(s)	457, 862
BsmFI	GGGAC	1 cut(s)	878
BsnI	GGCC	2 cut(s)	988, 1012
BsoBI	CYCGRG	1 cut(s)	1040
Bsp119I	TTCGAA	1 cut(s)	742
Bsp1286I	GDGCHC	2 cut(s)	11, 498
Bsp13I	TCCGGA	2 cut(s)	677, 693
Bsp143I	GATC	4 cut(s)	193, 396, 727, 994
BspACI	CCGC	3 cut(s)	12, 173, 561
BspANI	GGCC	2 cut(s)	988, 1012
BspCNI	CTCAG	2 cut(s)	406, 484
BspEI	TCCGGA	2 cut(s)	677, 693
BspHI	TCATGA	1 cut(s)	997
BspLI	GGNNCC	3 cut(s)	286, 514, 676
BspPI	GGATC	1 cut(s)	722
BspT104I	TTCGAA	1 cut(s)	742
BsrDI	GCAATG	3 cut(s)	14, 91, 885
BsrI	ACTGG	4 cut(s)	296, 462, 576, 689
BssMI	GATC	4 cut(s)	193, 396, 727, 994
Bst2UI	CCWGG	1 cut(s)	857
Bst4CI	ACNGT	5 cut(s)	226, 254, 479, 669, 890
BstBI	TTCGAA	1 cut(s)	742
BstC8I	GCNNGC	2 cut(s)	21, 69
BstDEI	CTNAG	3 cut(s)	393, 492, 724
BstF5I	GGATG	2 cut(s)	379, 951
BstH2I	RGCGCY	1 cut(s)	822
BstHHI	GCGC	1 cut(s)	821
BstKTI	GATC	4 cut(s)	196, 399, 730, 997
BstMBI	GATC	4 cut(s)	193, 396, 727, 994
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 968
BstNI	CCWGG	1 cut(s)	857
BstNSI	RCATGY	1 cut(s)	321
BstPAI	GACNNNNGTC	1 cut(s)	888
BstSCI	CCNGG	1 cut(s)	855
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	2 cut(s)	58, 157
BstX2I	RGATCY	1 cut(s)	727
BstXI	CCANNNNNNTGG	1 cut(s)	528
BstYI	RGATCY	1 cut(s)	727
BsuI	GTATCC	2 cut(s)	690, 713
BsuRI	GGCC	2 cut(s)	988, 1012
BtrI	CACGTC	2 cut(s)	379, 772
BtsCI	GGATG	2 cut(s)	379, 951
BtsIMutI	CAGTG	2 cut(s)	484, 569
Cac8I	GCNNGC	2 cut(s)	21, 69
CciI	TCATGA	1 cut(s)	997
CfoI	GCGC	1 cut(s)	821
Cfr13I	GGNCC	2 cut(s)	293, 513
CsiI	ACCWGGT	1 cut(s)	855
Csp6I	GTAC	4 cut(s)	89, 279, 469, 838
CviAII	CATG	5 cut(s)	304, 318, 658, 998, 1018
CviQI	GTAC	4 cut(s)	89, 279, 469, 838
DdeI	CTNAG	3 cut(s)	393, 492, 724
DpnI	GATC	4 cut(s)	195, 398, 729, 996
DpnII	GATC	4 cut(s)	193, 396, 727, 994
DraI	TTTAAA	2 cut(s)	624, 844
DriI	GACNNNNNGTC	1 cut(s)	157
Eam1105I	GACNNNNNGTC	1 cut(s)	157
Ecl136II	GAGCTC	2 cut(s)	9, 496
Eco147I	AGGCCT	1 cut(s)	1012
Eco24I	GRGCYC	2 cut(s)	11, 498
Eco47I	GGWCC	2 cut(s)	293, 513
Eco47III	AGCGCT	1 cut(s)	820
Eco53kI	GAGCTC	2 cut(s)	9, 496
Eco88I	CYCGRG	1 cut(s)	1040
EcoICRI	GAGCTC	2 cut(s)	9, 496
EcoO109I	RGGNCCY	1 cut(s)	513
EcoRI	GAATTC	1 cut(s)	1001
EcoRII	CCWGG	1 cut(s)	855
EcoT38I	GRGCYC	2 cut(s)	11, 498
FaeI	CATG	5 cut(s)	307, 321, 661, 1001, 1021
FalI	AAGNNNNNCTT	2 cut(s)	808, 840
FaqI	GGGAC	1 cut(s)	878
FatI	CATG	5 cut(s)	303, 317, 657, 997, 1017
Fnu4HI	GCNGC	2 cut(s)	72, 171
FokI	GGATG	2 cut(s)	386, 958
FriOI	GRGCYC	2 cut(s)	11, 498
Fsp4HI	GCNGC	2 cut(s)	72, 171
FspBI	CTAG	2 cut(s)	314, 701
GlaI	GCGC	1 cut(s)	820
GluI	GCNGC	2 cut(s)	72, 171
HaeII	RGCGCY	1 cut(s)	822
HaeIII	GGCC	2 cut(s)	988, 1012
HapII	CCGG	2 cut(s)	678, 694
HhaI	GCGC	1 cut(s)	821
Hin1II	CATG	5 cut(s)	307, 321, 661, 1001, 1021
Hin6I	GCGC	1 cut(s)	819
HinP1I	GCGC	1 cut(s)	819
HinfI	GANTC	1 cut(s)	1053
HpaII	CCGG	2 cut(s)	678, 694
HphI	GGTGA	4 cut(s)	427, 510, 673, 678
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	5 cut(s)	198, 396, 493, 504, 785
Hpy188III	TCNNGA	5 cut(s)	121, 678, 694, 908, 998
Hpy8I	GTNNAC	1 cut(s)	301
Hpy99I	CGWCG	1 cut(s)	773
HpyAV	CCTTC	1 cut(s)	1023
HpyCH4III	ACNGT	5 cut(s)	226, 254, 479, 669, 890
HpyCH4IV	ACGT	2 cut(s)	378, 771
HpyCH4V	TGCA	6 cut(s)	19, 96, 482, 569, 878, 898
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 968
HpyF3I	CTNAG	3 cut(s)	393, 492, 724
HpySE526I	ACGT	2 cut(s)	378, 771
Hsp92II	CATG	5 cut(s)	307, 321, 661, 1001, 1021
HspAI	GCGC	1 cut(s)	819
Kpn2I	TCCGGA	2 cut(s)	677, 693
Kzo9I	GATC	4 cut(s)	193, 396, 727, 994
LmnI	GCTCC	3 cut(s)	14, 284, 680
Lsp1109I	GCAGC	2 cut(s)	58, 157
LweI	GCATC	2 cut(s)	865, 907
MabI	ACCWGGT	1 cut(s)	855
MaeI	CTAG	2 cut(s)	314, 701
MaeII	ACGT	2 cut(s)	378, 771
MaeIII	GTNAC	3 cut(s)	379, 709, 890
MalI	GATC	4 cut(s)	195, 398, 729, 996
MboI	GATC	4 cut(s)	193, 396, 727, 994
MboII	GAAGA	4 cut(s)	120, 242, 556, 1004
MflI	RGATCY	1 cut(s)	727
MhlI	GDGCHC	2 cut(s)	11, 498
MnlI	CCTC	5 cut(s)	47, 235, 526, 598, 1036
MroI	TCCGGA	2 cut(s)	677, 693
MseI	TTAA	4 cut(s)	101, 165, 623, 843
MslI	CAYNNNNRTG	5 cut(s)	316, 408, 526, 944, 976
MspI	CCGG	2 cut(s)	678, 694
MspR9I	CCNGG	1 cut(s)	857
MvaI	CCWGG	1 cut(s)	857
MwoI	GCNNNNNNNGC	2 cut(s)	20, 968
NdeII	GATC	4 cut(s)	193, 396, 727, 994
NlaIII	CATG	5 cut(s)	307, 321, 661, 1001, 1021
NlaIV	GGNNCC	3 cut(s)	286, 514, 676
NmeAIII	GCCGAG	1 cut(s)	903
NmuCI	GTSAC	3 cut(s)	379, 709, 890
NspI	RCATGY	1 cut(s)	321
NspV	TTCGAA	1 cut(s)	742
PaeR7I	CTCGAG	1 cut(s)	1040
PagI	TCATGA	1 cut(s)	997
PceI	AGGCCT	1 cut(s)	1012
PfeI	GAWTC	1 cut(s)	1053
PkrI	GCNGC	2 cut(s)	73, 172
PpuMI	RGGWCCY	1 cut(s)	513
PshAI	GACNNNNGTC	1 cut(s)	888
PsiI	TTATAA	1 cut(s)	915
Psp124BI	GAGCTC	2 cut(s)	11, 498
Psp5II	RGGWCCY	1 cut(s)	513
Psp6I	CCWGG	1 cut(s)	855
PspGI	CCWGG	1 cut(s)	855
PspN4I	GGNNCC	3 cut(s)	286, 514, 676
PspPI	GGNCC	2 cut(s)	293, 513
PspPPI	RGGWCCY	1 cut(s)	513
PspXI	VCTCGAGB	1 cut(s)	1040
PsuI	RGATCY	1 cut(s)	727
RsaI	GTAC	4 cut(s)	90, 280, 470, 839
RsaNI	GTAC	4 cut(s)	89, 279, 469, 838
RseI	CAYNNNNRTG	5 cut(s)	316, 408, 526, 944, 976
SacI	GAGCTC	2 cut(s)	11, 498
SaqAI	TTAA	4 cut(s)	101, 165, 623, 843
SatI	GCNGC	2 cut(s)	72, 171
Sau3AI	GATC	4 cut(s)	193, 396, 727, 994
Sau96I	GGNCC	2 cut(s)	293, 513
ScaI	AGTACT	2 cut(s)	470, 839
ScrFI	CCNGG	1 cut(s)	857
SduI	GDGCHC	2 cut(s)	11, 498
SetI	ASST	9 cut(s)	11, 381, 423, 498, 553, 774, 782, 858, 980
SexAI	ACCWGGT	1 cut(s)	855
SfaNI	GCATC	2 cut(s)	865, 907
SfcI	CTRYAG	1 cut(s)	225
Sfr274I	CTCGAG	1 cut(s)	1040
SfuI	TTCGAA	1 cut(s)	742
SinI	GGWCC	2 cut(s)	293, 513
SlaI	CTCGAG	1 cut(s)	1040
SmiMI	CAYNNNNRTG	5 cut(s)	316, 408, 526, 944, 976
SmlI	CTYRAG	1 cut(s)	1040
SmoI	CTYRAG	1 cut(s)	1040
SseBI	AGGCCT	1 cut(s)	1012
SsiI	CCGC	3 cut(s)	12, 173, 561
SspMI	CTAG	2 cut(s)	314, 701
SstI	GAGCTC	2 cut(s)	11, 498
StuI	AGGCCT	1 cut(s)	1012
StyD4I	CCNGG	1 cut(s)	855
TaaI	ACNGT	5 cut(s)	226, 254, 479, 669, 890
TaiI	ACGT	2 cut(s)	381, 774
TaqI	TCGA	2 cut(s)	742, 1041
TatI	WGTACW	2 cut(s)	468, 837
TfiI	GAWTC	1 cut(s)	1053
Tru1I	TTAA	4 cut(s)	101, 165, 623, 843
Tru9I	TTAA	4 cut(s)	101, 165, 623, 843
TscAI	CASTG	2 cut(s)	484, 576
TseFI	GTSAC	3 cut(s)	379, 709, 890
TseI	GCWGC	2 cut(s)	71, 170
Tsp45I	GTSAC	3 cut(s)	379, 709, 890
TspDTI	ATGAA	5 cut(s)	27, 106, 557, 1014, 1034
TspGWI	ACGGA	1 cut(s)	958
TspRI	CASTG	2 cut(s)	484, 576
VpaK11BI	GGWCC	2 cut(s)	293, 513
XapI	RAATTY	5 cut(s)	113, 681, 903, 918, 1001
XceI	RCATGY	1 cut(s)	321
XhoI	CTCGAG	1 cut(s)	1040
XspI	CTAG	2 cut(s)	314, 701
ZrmI	AGTACT	2 cut(s)	470, 839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.