Rw0G010000

Protein GUCD1-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00413
OG0004784
Physical Location & Seq
Forward (+)
16888 .. 18680
1793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G010000.1

Sequence Viewer

Length: 429 bp
ATGATGCTTTTTCATTGTCCTTGTACACATTTAAGGACGTTTTTTCAACTCCCATACATGAACCAGCTATATTCTTGGGATTGTGGCCTCGCCTGTGTTCTGATGGTTTTTTGCAGGTCAGTCAGTCGAGAAGAAATTTGTTTCTTGATTCTCTATGGGAAATACATTGCCATAGTACTGGTTGATCAGTATAAGTTGAGCCCATCTAGTCAGGACAATGTTTTTATCTCAGACCTTTGTGGAAGCAACTCTGATTACACAGGTCAATATGTGATCATATGTGGGTATGACACTGCTACGGATGAGTTTGAGATTAGAGATCCGGCCTGTTCAAAACATGAAAAAGTATCGTCAACATGCTTAGAAGAAAGTAGGAAGCCAGATAGCCCCTCATTACGACTTTCTCGGAATGATAATATTAATTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Guanylate_cyc_2

Protein Analysis

142

Amino Acids

16.26

Weight (kDa)

5.05

Isoelectric Point (pI)

58.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Guanylate_cyc_2 PF09778 38 - 126 1.2e-16 Guanylylate cyclase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 105
AclWI GGATC 1 cut(s) 314
AcsI RAATTY 1 cut(s) 135
AfaI GTAC 2 cut(s) 25, 177
AgsI TTSAA 2 cut(s) 47, 333
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
AlwI GGATC 1 cut(s) 314
AoxI GGCC 2 cut(s) 85, 324
ApoI RAATTY 1 cut(s) 135
AseI ATTAAT 1 cut(s) 420
BanII GRGCYC 1 cut(s) 203
BccI CCATC 2 cut(s) 97, 211
BclI TGATCA 2 cut(s) 184, 273
BfaI CTAG 1 cut(s) 207
BfuAI ACCTGC 1 cut(s) 105
BmcAI AGTACT 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 183
Bse3DI GCAATG 1 cut(s) 165
BseGI GGATG 1 cut(s) 307
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 243
BseNI ACTGG 1 cut(s) 183
BshFI GGCC 2 cut(s) 87, 326
BsiSI CCGG 1 cut(s) 323
BsnI GGCC 2 cut(s) 87, 326
Bsp1286I GDGCHC 1 cut(s) 203
Bsp1407I TGTACA 1 cut(s) 23
Bsp143I GATC 3 cut(s) 184, 273, 319
BspANI GGCC 2 cut(s) 87, 326
BspCNI CTCAG 1 cut(s) 242
BspMI ACCTGC 1 cut(s) 105
BspPI GGATC 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 165
BsrGI TGTACA 1 cut(s) 23
BsrI ACTGG 1 cut(s) 183
BssMI GATC 3 cut(s) 184, 273, 319
BstAUI TGTACA 1 cut(s) 23
BstDEI CTNAG 2 cut(s) 229, 361
BstF5I GGATG 1 cut(s) 307
BstKTI GATC 3 cut(s) 187, 276, 322
BstMBI GATC 3 cut(s) 184, 273, 319
BstNSI RCATGY 1 cut(s) 360
BstX2I RGATCY 1 cut(s) 319
BstXI CCANNNNNNTGG 1 cut(s) 178
BstYI RGATCY 1 cut(s) 319
BsuRI GGCC 2 cut(s) 87, 326
BtsCI GGATG 1 cut(s) 307
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 1 cut(s) 291
BveI ACCTGC 1 cut(s) 105
Csp6I GTAC 2 cut(s) 24, 176
CviAII CATG 3 cut(s) 58, 338, 357
CviJI RGCY 6 cut(s) 67, 87, 201, 326, 379, 387
CviKI_1 RGCY 6 cut(s) 67, 87, 201, 326, 379, 387
CviQI GTAC 2 cut(s) 24, 176
DdeI CTNAG 2 cut(s) 229, 361
DpnI GATC 3 cut(s) 186, 275, 321
DpnII GATC 3 cut(s) 184, 273, 319
Eco24I GRGCYC 1 cut(s) 203
EcoT38I GRGCYC 1 cut(s) 203
FaeI CATG 3 cut(s) 61, 341, 360
FatI CATG 3 cut(s) 57, 337, 356
FauNDI CATATG 1 cut(s) 278
FbaI TGATCA 2 cut(s) 184, 273
FokI GGATG 1 cut(s) 314
FriOI GRGCYC 1 cut(s) 203
FspBI CTAG 1 cut(s) 207
HaeIII GGCC 2 cut(s) 87, 326
HapII CCGG 1 cut(s) 323
Hin1II CATG 3 cut(s) 61, 341, 360
HincII GTYRAC 1 cut(s) 354
HindII GTYRAC 1 cut(s) 354
HinfI GANTC 1 cut(s) 148
HpaII CCGG 1 cut(s) 323
Hpy166II GTNNAC 2 cut(s) 26, 354
Hpy188I TCNGA 4 cut(s) 102, 232, 253, 408
Hpy188III TCNNGA 4 cut(s) 128, 145, 212, 426
Hpy8I GTNNAC 2 cut(s) 26, 354
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 1 cut(s) 114
HpyF3I CTNAG 2 cut(s) 229, 361
HpySE526I ACGT 1 cut(s) 38
Hsp92II CATG 3 cut(s) 61, 341, 360
Ksp22I TGATCA 2 cut(s) 184, 273
Kzo9I GATC 3 cut(s) 184, 273, 319
LpnPI CCDG 9 cut(s) 77, 100, 106, 164, 197, 246, 336, 340, 393
MaeI CTAG 1 cut(s) 207
MaeII ACGT 1 cut(s) 38
MalI GATC 3 cut(s) 186, 275, 321
MboI GATC 3 cut(s) 184, 273, 319
MboII GAAGA 2 cut(s) 143, 377
MflI RGATCY 1 cut(s) 319
MhlI GDGCHC 1 cut(s) 203
MluCI AATT 2 cut(s) 135, 421
MnlI CCTC 2 cut(s) 98, 400
MseI TTAA 2 cut(s) 32, 420
MspI CCGG 1 cut(s) 323
NdeI CATATG 1 cut(s) 278
NdeII GATC 3 cut(s) 184, 273, 319
NlaIII CATG 3 cut(s) 61, 341, 360
NspI RCATGY 1 cut(s) 360
PfeI GAWTC 1 cut(s) 148
PshBI ATTAAT 1 cut(s) 420
PsuI RGATCY 1 cut(s) 319
RsaI GTAC 2 cut(s) 25, 177
RsaNI GTAC 2 cut(s) 24, 176
SaqAI TTAA 2 cut(s) 32, 420
Sau3AI GATC 3 cut(s) 184, 273, 319
ScaI AGTACT 1 cut(s) 177
SduI GDGCHC 1 cut(s) 203
SetI ASST 5 cut(s) 41, 69, 119, 237, 265
Sse9I AATT 2 cut(s) 135, 421
SspI AATATT 1 cut(s) 418
SspMI CTAG 1 cut(s) 207
TaiI ACGT 1 cut(s) 41
TaqI TCGA 1 cut(s) 127
TasI AATT 2 cut(s) 135, 421
TatI WGTACW 2 cut(s) 23, 175
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 2 cut(s) 32, 420
Tru9I TTAA 2 cut(s) 32, 420
TscAI CASTG 1 cut(s) 298
TspDTI ATGAA 2 cut(s) 74, 354
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 1 cut(s) 298
VspI ATTAAT 1 cut(s) 420
XapI RAATTY 1 cut(s) 135
XceI RCATGY 1 cut(s) 360
XspI CTAG 1 cut(s) 207
ZrmI AGTACT 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.