Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004784

Physical Location & Seq

Genomic Coordinates Forward (+)

15875149 .. 15879545

Gene Structure 4397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g16230.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTGGCCTTCGTATTTTTTATTCAACAAGATTGTTAAGACAGAAGATAAAGATGTATCAGATGGAGAACTTTCAGGCATGGTAGAACCCTACCCATGTGAACAGCCGTTGCCCTGCTCGCACTTTGTTGAAGTCCCACACATAAACCAGCAAGATTCTTGGGATTGCGGCCTTGCCTGCGTTCTGATGGTCTTTCGGACCATTGGCATAGACAACTGCGATATTCAGACATTGGCACAGCTATGTGGCACAACTAGCATTTGGACTGTTGATCTAGCATTTTTATTACAGAAGTTCTCTATTAGTTTTTGCTACTACACAGTGACAGTTGGAGCAAACCCAAGTTATTCTGGGGAGAAATTTTACAAGGAGCAATTACCTAATGATCTGGAGCGGGTCAATAATCTATTTCAAAAAGCACTGGAAGGTGGAATGACGCGATCAATCAGTCGAGAAGAAATTTGTTTCTCAATTTTGTCCAGGAAATACATTGCCATTGTTTTGGTTGATCAGTATAAGTTGAGTAGGTCTCGTCTGGACGATGTTTTTGTCTCAGACTTTTGTGGAAGCAACTCTGGTTACACAGGTCACTATGTTGTCATATGTGGGTATGACACTACCACGGATGAGTTTGAAATTAGAGATCCAGCCTGTTCAAGGAAAAATGAGAGGATCTCATCAACATGCTTAGAAGAAGCCCGCAAATCCTTTGGTACTGACGAGCGATCTTCTCTTGATATCTCTGAAGAAGAGCGGGAAGCAAAATCGCCCGGCAATACAACAGTGATAGTATTGATTCCTGACTTCAATTGTCGGTCCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Guanylate_cyc_2

Protein Analysis

275

Amino Acids

31.0

Weight (kDa)

4.7

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05930 AT5G05930 AT5G05930 AT5G05930 AT5G05930 AT5G05930 AT5G05930
fragaria_vesca	FvH4_7g23620 FvH4_7g23620 FvH4_7g23620 FvH4_7g23620 FvH4_7g23620 FvH4_7g23620 FvH4_7g23620
malus_domestica	MD01G1142100.v1.1 MD07G1207800.v1.1
prunus_persica	Prupe.2G243100_v2.0.a1 Prupe.2G243100_v2.0.a1
pyrus_communis	pycom01g16230 pycom07g19330
rosa_chinensis	RchiOBHm_Chr1g0368881
rosa_laevigata	RLG00000027180
rosa_multiflora	Rmu_sc0004250.1_g000049
rosa_roxburghii	Rroxscaffold_4G00288240
rosa_rugosa	Rorug01G0345400 Rorug01G0345500
rosa_samantha	Rh1AG352600 Rh1BG316100 Rh1CG330800 Rh1DG347600
rosa_wichuraiana	Rw0G010000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	394, 754
AccII	CGCG	1 cut(s)	439
AciI	CCGC	4 cut(s)	168, 394, 700, 754
AclWI	GGATC	2 cut(s)	638, 680
AcsI	RAATTY	2 cut(s)	359, 459
AcuI	CTGAAG	1 cut(s)	765
AfaI	GTAC	1 cut(s)	715
AfiI	CCNNNNNNNGG	1 cut(s)	657
AgsI	TTSAA	6 cut(s)	25, 131, 413, 635, 657, 808
AjnI	CCWGG	1 cut(s)	479
AluBI	AGCT	1 cut(s)	241
AluI	AGCT	1 cut(s)	241
Alw26I	GTCTC	2 cut(s)	534, 556
AlwI	GGATC	2 cut(s)	638, 680
AoxI	GGCC	2 cut(s)	5, 169
ApoI	RAATTY	2 cut(s)	359, 459
ArsI	GACNNNNNNTTYG	2 cut(s)	530, 562
AspS9I	GGNCC	2 cut(s)	198, 816
AsuC2I	CCSGG	1 cut(s)	771
AvaII	GGWCC	2 cut(s)	198, 816
BccI	CCATC	2 cut(s)	56, 181
BceAI	ACGGC	1 cut(s)	91
BciT130I	CCWGG	1 cut(s)	481
BclI	TGATCA	1 cut(s)	508
BcnI	CCSGG	1 cut(s)	771
BcoDI	GTCTC	2 cut(s)	534, 556
BfaI	CTAG	2 cut(s)	255, 275
BisI	GCNGC	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	170
Bme1390I	CCNGG	2 cut(s)	481, 771
Bme18I	GGWCC	2 cut(s)	198, 816
BmgT120I	GGNCC	2 cut(s)	198, 816
BmrFI	CCNGG	2 cut(s)	481, 771
BplI	GAGNNNNNCTC	4 cut(s)	514, 546, 659, 691
BpmI	CTGGAG	1 cut(s)	410
BpuMI	CCSGG	1 cut(s)	771
BsaI	GGTCTC	1 cut(s)	534
BsaJI	CCNNGG	1 cut(s)	621
Bsc4I	CCNNNNNNNGG	1 cut(s)	657
Bse1I	ACTGG	1 cut(s)	426
Bse3DI	GCAATG	1 cut(s)	489
BseBI	CCWGG	1 cut(s)	481
BseDI	CCNNGG	1 cut(s)	621
BseGI	GGATG	1 cut(s)	631
BseLI	CCNNNNNNNGG	1 cut(s)	657
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	1 cut(s)	567
BseNI	ACTGG	1 cut(s)	426
Bsh1236I	CGCG	1 cut(s)	439
BshFI	GGCC	2 cut(s)	7, 171
BsiSI	CCGG	1 cut(s)	771
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	657
BsmAI	GTCTC	2 cut(s)	534, 556
BsmFI	GGGAC	1 cut(s)	119
BsnI	GGCC	2 cut(s)	7, 171
Bso31I	GGTCTC	1 cut(s)	534
Bsp143I	GATC	7 cut(s)	271, 385, 440, 508, 643, 672, 725
BspACI	CCGC	4 cut(s)	168, 394, 700, 754
BspANI	GGCC	2 cut(s)	7, 171
BspCNI	CTCAG	1 cut(s)	566
BspFNI	CGCG	1 cut(s)	439
BspPI	GGATC	2 cut(s)	638, 680
BspQI	GCTCTTC	1 cut(s)	744
BspTNI	GGTCTC	1 cut(s)	534
BsrBI	CCGCTC	2 cut(s)	394, 754
BsrDI	GCAATG	1 cut(s)	489
BsrI	ACTGG	1 cut(s)	426
BssECI	CCNNGG	1 cut(s)	621
BssMI	GATC	7 cut(s)	271, 385, 440, 508, 643, 672, 725
Bst2UI	CCWGG	1 cut(s)	481
Bst4CI	ACNGT	4 cut(s)	268, 322, 328, 784
Bst6I	CTCTTC	1 cut(s)	744
BstC8I	GCNNGC	3 cut(s)	119, 178, 700
BstDEI	CTNAG	2 cut(s)	553, 688
BstDSI	CCRYGG	1 cut(s)	621
BstENI	CCTNNNNNAGG	1 cut(s)	655
BstF5I	GGATG	1 cut(s)	631
BstFNI	CGCG	1 cut(s)	439
BstKTI	GATC	7 cut(s)	274, 388, 443, 511, 646, 675, 728
BstMAI	GTCTC	2 cut(s)	534, 556
BstMBI	GATC	7 cut(s)	271, 385, 440, 508, 643, 672, 725
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 177, 255
BstNI	CCWGG	1 cut(s)	481
BstNSI	RCATGY	1 cut(s)	687
BstSCI	CCNGG	2 cut(s)	479, 769
BstUI	CGCG	1 cut(s)	439
BstX2I	RGATCY	2 cut(s)	643, 672
BstXI	CCANNNNNNTGG	1 cut(s)	502
BstYI	RGATCY	2 cut(s)	643, 672
BsuRI	GGCC	2 cut(s)	7, 171
BtgI	CCRYGG	1 cut(s)	621
BtsCI	GGATG	1 cut(s)	631
BtsIMutI	CAGTG	3 cut(s)	327, 419, 789
Cac8I	GCNNGC	3 cut(s)	119, 178, 700
Cfr13I	GGNCC	2 cut(s)	198, 816
CpoI	CGGWCCG	1 cut(s)	816
CseI	GACGC	1 cut(s)	445
Csp6I	GTAC	1 cut(s)	714
CspI	CGGWCCG	1 cut(s)	816
CviAII	CATG	3 cut(s)	79, 96, 684
CviJI	RGCY	6 cut(s)	7, 106, 171, 241, 650, 698
CviKI_1	RGCY	6 cut(s)	7, 106, 171, 241, 650, 698
CviQI	GTAC	1 cut(s)	714
DdeI	CTNAG	2 cut(s)	553, 688
DpnI	GATC	7 cut(s)	273, 387, 442, 510, 645, 674, 727
DpnII	GATC	7 cut(s)	271, 385, 440, 508, 643, 672, 725
Eam1104I	CTCTTC	1 cut(s)	744
EarI	CTCTTC	1 cut(s)	744
Eco31I	GGTCTC	1 cut(s)	534
Eco32I	GATATC	1 cut(s)	739
Eco47I	GGWCC	2 cut(s)	198, 816
Eco57I	CTGAAG	1 cut(s)	765
EcoNI	CCTNNNNNAGG	1 cut(s)	655
EcoRII	CCWGG	1 cut(s)	479
EcoRV	GATATC	1 cut(s)	739
FaeI	CATG	3 cut(s)	82, 99, 687
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	3 cut(s)	78, 95, 683
FauI	CCCGC	3 cut(s)	387, 707, 747
FauNDI	CATATG	1 cut(s)	602
FbaI	TGATCA	1 cut(s)	508
Fnu4HI	GCNGC	1 cut(s)	169
FokI	GGATG	1 cut(s)	638
Fsp4HI	GCNGC	1 cut(s)	169
FspBI	CTAG	2 cut(s)	255, 275
GluI	GCNGC	1 cut(s)	169
GsuI	CTGGAG	1 cut(s)	410
HaeIII	GGCC	2 cut(s)	7, 171
HapII	CCGG	1 cut(s)	771
HgaI	GACGC	1 cut(s)	445
Hin1II	CATG	3 cut(s)	82, 99, 687
HinfI	GANTC	2 cut(s)	155, 796
HpaII	CCGG	1 cut(s)	771
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	6 cut(s)	61, 186, 198, 228, 556, 745
Hpy188III	TCNNGA	5 cut(s)	389, 452, 536, 734, 800
Hpy8I	GTNNAC	1 cut(s)	101
HpyAV	CCTTC	2 cut(s)	18, 419
HpyCH4III	ACNGT	4 cut(s)	268, 322, 328, 784
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 177, 255
HpyF3I	CTNAG	2 cut(s)	553, 688
Hsp92II	CATG	3 cut(s)	82, 99, 687
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	7 cut(s)	271, 385, 440, 508, 643, 672, 725
LguI	GCTCTTC	1 cut(s)	744
LmnI	GCTCC	3 cut(s)	332, 370, 391
MaeI	CTAG	2 cut(s)	255, 275
MaeIII	GTNAC	3 cut(s)	322, 578, 587
MalI	GATC	7 cut(s)	273, 387, 442, 510, 645, 674, 727
MbiI	CCGCTC	2 cut(s)	394, 754
MboI	GATC	7 cut(s)	271, 385, 440, 508, 643, 672, 725
MboII	GAAGA	6 cut(s)	56, 467, 704, 720, 758, 761
MfeI	CAATTG	1 cut(s)	808
MflI	RGATCY	2 cut(s)	643, 672
MluCI	AATT	6 cut(s)	359, 374, 459, 471, 636, 808
MmeI	TCCRAC	1 cut(s)	310
MnlI	CCTC	1 cut(s)	663
MseI	TTAA	1 cut(s)	36
MslI	CAYNNNNRTG	2 cut(s)	241, 682
MspI	CCGG	1 cut(s)	771
MspR9I	CCNGG	2 cut(s)	481, 771
MunI	CAATTG	1 cut(s)	808
MvaI	CCWGG	1 cut(s)	481
MvnI	CGCG	1 cut(s)	439
MwoI	GCNNNNNNNGC	3 cut(s)	118, 177, 255
NciI	CCSGG	1 cut(s)	771
NdeI	CATATG	1 cut(s)	602
NdeII	GATC	7 cut(s)	271, 385, 440, 508, 643, 672, 725
NlaIII	CATG	3 cut(s)	82, 99, 687
NmuCI	GTSAC	2 cut(s)	322, 587
NspI	RCATGY	1 cut(s)	687
PciSI	GCTCTTC	1 cut(s)	744
PfeI	GAWTC	2 cut(s)	155, 796
PfoI	TCCNGGA	1 cut(s)	479
PkrI	GCNGC	1 cut(s)	170
Psp6I	CCWGG	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	479
PspPI	GGNCC	2 cut(s)	198, 816
PsuI	RGATCY	2 cut(s)	643, 672
RsaI	GTAC	1 cut(s)	715
RsaNI	GTAC	1 cut(s)	714
RseI	CAYNNNNRTG	2 cut(s)	241, 682
Rsr2I	CGGWCCG	1 cut(s)	816
RsrII	CGGWCCG	1 cut(s)	816
SapI	GCTCTTC	1 cut(s)	744
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	1 cut(s)	169
Sau3AI	GATC	7 cut(s)	271, 385, 440, 508, 643, 672, 725
Sau96I	GGNCC	2 cut(s)	198, 816
ScrFI	CCNGG	2 cut(s)	481, 771
SetI	ASST	5 cut(s)	243, 382, 430, 530, 589
SinI	GGWCC	2 cut(s)	198, 816
SmiMI	CAYNNNNRTG	2 cut(s)	241, 682
Sse9I	AATT	6 cut(s)	359, 374, 459, 471, 636, 808
SsiI	CCGC	4 cut(s)	168, 394, 700, 754
SspMI	CTAG	2 cut(s)	255, 275
StyD4I	CCNGG	2 cut(s)	479, 769
TaaI	ACNGT	4 cut(s)	268, 322, 328, 784
TaqI	TCGA	1 cut(s)	451
TaqII	GACCGA	1 cut(s)	804
TasI	AATT	6 cut(s)	359, 374, 459, 471, 636, 808
TauI	GCSGC	1 cut(s)	171
TfiI	GAWTC	2 cut(s)	155, 796
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	3 cut(s)	327, 426, 789
TseFI	GTSAC	2 cut(s)	322, 587
Tsp45I	GTSAC	2 cut(s)	322, 587
TspGWI	ACGGA	2 cut(s)	638, 808
TspRI	CASTG	3 cut(s)	327, 426, 789
VpaK11BI	GGWCC	2 cut(s)	198, 816
XagI	CCTNNNNNAGG	1 cut(s)	655
XapI	RAATTY	2 cut(s)	359, 459
XceI	RCATGY	1 cut(s)	687
XspI	CTAG	2 cut(s)	255, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.