Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004784

Physical Location & Seq

Genomic Coordinates Forward (+)

21679059 .. 21683449

Gene Structure 4391 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g19330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGTGGCCTTCGTATTTTTTATTCAATAAGATTCTTAAGACAGAAGATGAAGATGTATCGAATGGAGAACATTCAGGCATGGTAGAACCCTACCCATGTGAACATCCGTTGCCCTGCTCGCACTTTGTTGAAGTCCCGCACATAAACCAGCAAGATTCTTGGGATTGCGGCCTTGCCTGCGTTCTTATGGTCTTTCGGACCCTTGGCATAGACAACTGCGATATTCAGACATTGGCAGAGCTATGTCACACAAATAGCATTTGGACCGTTGATCTAGCATTTTTACTACAGAAGTTCTCTATTAGTTTTTCCTACTACACAGTGACGTTTGGAGCAAACCCTAATTATTCTGGAGAGACATTTTACAAGGAGCAATTACCTAATGATCTGGAGCGAGTTGATAATCTATTTCAAAAAGCACTAGAAGCCGGAATTAATATACAGCGCAGATCAATCAGTCGAGAAGAAATTTGTTTCTCGATTTTGTCTGGGAAGTACATTGCCATTGTTTTGGTTGATCAGTATAAATTGAGTAGGTCTTCTTCGGACGATGTTTTCGTCTCTGACTATTGTGTAAGCAACTCTGGTTACACAGGTCACTATGTCGTCATATGTGGGTATGACACTACTGCAGATGAGTTTGAAATTAGAGATCCGGCCTGTTCAAGGAAAAATGAGAGGATCGATCCTCAACGTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Guanylate_cyc_2

Protein Analysis

234

Amino Acids

26.6

Weight (kDa)

4.68

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C39_2	PF13529	44 - 220	4.1e-09	Peptidase_C39 like family
Guanylate_cyc_2	PF09778	45 - 230	2e-63	Guanylylate cyclase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05930 AT5G05930 AT5G05930 AT5G05930 AT5G05930 AT5G05930 AT5G05930
fragaria_vesca	FvH4_7g23620 FvH4_7g23620 FvH4_7g23620 FvH4_7g23620 FvH4_7g23620 FvH4_7g23620 FvH4_7g23620
malus_domestica	MD01G1142100.v1.1 MD07G1207800.v1.1
prunus_persica	Prupe.2G243100_v2.0.a1 Prupe.2G243100_v2.0.a1
pyrus_communis	pycom01g16230 pycom07g19330
rosa_chinensis	RchiOBHm_Chr1g0368881
rosa_laevigata	RLG00000027180
rosa_multiflora	Rmu_sc0004250.1_g000049
rosa_roxburghii	Rroxscaffold_4G00288240
rosa_rugosa	Rorug01G0345400 Rorug01G0345500
rosa_samantha	Rh1AG352600 Rh1BG316100 Rh1CG330800 Rh1DG347600
rosa_wichuraiana	Rw0G010000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	137, 168
AclWI	GGATC	3 cut(s)	647, 680, 689
AcsI	RAATTY	1 cut(s)	468
AfaI	GTAC	1 cut(s)	497
AfiI	CCNNNNNNNGG	1 cut(s)	666
AflII	CTTAAG	1 cut(s)	35
AgsI	TTSAA	5 cut(s)	25, 131, 413, 644, 666
AluBI	AGCT	1 cut(s)	241
AluI	AGCT	1 cut(s)	241
Alw26I	GTCTC	2 cut(s)	350, 565
AlwI	GGATC	3 cut(s)	647, 680, 689
AoxI	GGCC	3 cut(s)	5, 169, 657
ApoI	RAATTY	1 cut(s)	468
ArsI	GACNNNNNNTTYG	2 cut(s)	539, 571
AseI	ATTAAT	1 cut(s)	435
AspLEI	GCGC	1 cut(s)	447
AspS9I	GGNCC	2 cut(s)	198, 264
AvaII	GGWCC	2 cut(s)	198, 264
BarI	GAAGNNNNNNTAC	2 cut(s)	526, 558
BbsI	GAAGAC	1 cut(s)	531
BclI	TGATCA	1 cut(s)	517
BcoDI	GTCTC	2 cut(s)	350, 565
BfaI	CTAG	2 cut(s)	275, 422
BfmI	CTRYAG	2 cut(s)	287, 630
BfrI	CTTAAG	1 cut(s)	35
BisI	GCNGC	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	170
Bme18I	GGWCC	2 cut(s)	198, 264
BmgT120I	GGNCC	2 cut(s)	198, 264
BmiI	GGNNCC	1 cut(s)	200
BpiI	GAAGAC	1 cut(s)	531
BpmI	CTGGAG	2 cut(s)	372, 410
Bsa29I	ATCGAT	1 cut(s)	684
BsaJI	CCNNGG	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	1 cut(s)	666
Bse3DI	GCAATG	1 cut(s)	498
BseCI	ATCGAT	1 cut(s)	684
BseDI	CCNNGG	1 cut(s)	202
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	1 cut(s)	666
BseMI	GCAATG	1 cut(s)	498
BshFI	GGCC	3 cut(s)	7, 171, 659
BshVI	ATCGAT	1 cut(s)	684
BsiSI	CCGG	2 cut(s)	429, 656
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	666
BsmAI	GTCTC	2 cut(s)	350, 565
BsmBI	CGTCTC	1 cut(s)	565
BsmFI	GGGAC	1 cut(s)	119
BsnI	GGCC	3 cut(s)	7, 171, 659
Bsp143I	GATC	7 cut(s)	271, 385, 449, 517, 652, 681, 685
BspACI	CCGC	2 cut(s)	137, 168
BspANI	GGCC	3 cut(s)	7, 171, 659
BspDI	ATCGAT	1 cut(s)	684
BspLI	GGNNCC	1 cut(s)	200
BspMAI	CTGCAG	1 cut(s)	634
BspPI	GGATC	3 cut(s)	647, 680, 689
BspTI	CTTAAG	1 cut(s)	35
BsrDI	GCAATG	1 cut(s)	498
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	7 cut(s)	271, 385, 449, 517, 652, 681, 685
BssT1I	CCWWGG	1 cut(s)	202
Bst4CI	ACNGT	2 cut(s)	268, 322
BstAFI	CTTAAG	1 cut(s)	35
BstC8I	GCNNGC	2 cut(s)	119, 178
BstDEI	CTNAG	1 cut(s)	699
BstENI	CCTNNNNNAGG	1 cut(s)	664
BstF5I	GGATG	1 cut(s)	103
BstHHI	GCGC	1 cut(s)	447
BstKTI	GATC	7 cut(s)	274, 388, 452, 520, 655, 684, 688
BstMAI	GTCTC	2 cut(s)	350, 565
BstMBI	GATC	7 cut(s)	271, 385, 449, 517, 652, 681, 685
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 177, 425
BstSFI	CTRYAG	2 cut(s)	287, 630
BstV2I	GAAGAC	1 cut(s)	531
BstX2I	RGATCY	1 cut(s)	652
BstXI	CCANNNNNNTGG	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	652
Bsu15I	ATCGAT	1 cut(s)	684
BsuRI	GGCC	3 cut(s)	7, 171, 659
BsuTUI	ATCGAT	1 cut(s)	684
BtsCI	GGATG	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	327
Cac8I	GCNNGC	2 cut(s)	119, 178
CfoI	GCGC	1 cut(s)	447
Cfr13I	GGNCC	2 cut(s)	198, 264
ClaI	ATCGAT	1 cut(s)	684
Csp6I	GTAC	1 cut(s)	496
CviAII	CATG	2 cut(s)	79, 96
CviJI	RGCY	5 cut(s)	7, 171, 241, 428, 659
CviKI_1	RGCY	5 cut(s)	7, 171, 241, 428, 659
CviQI	GTAC	1 cut(s)	496
DdeI	CTNAG	1 cut(s)	699
DpnI	GATC	7 cut(s)	273, 387, 451, 519, 654, 683, 687
DpnII	GATC	7 cut(s)	271, 385, 449, 517, 652, 681, 685
Eco130I	CCWWGG	1 cut(s)	202
Eco47I	GGWCC	2 cut(s)	198, 264
EcoNI	CCTNNNNNAGG	1 cut(s)	664
EcoT14I	CCWWGG	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	202
Esp3I	CGTCTC	1 cut(s)	565
FaeI	CATG	2 cut(s)	82, 99
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	2 cut(s)	78, 95
FauI	CCCGC	1 cut(s)	144
FauNDI	CATATG	1 cut(s)	611
FbaI	TGATCA	1 cut(s)	517
Fnu4HI	GCNGC	1 cut(s)	169
FokI	GGATG	1 cut(s)	90
Fsp4HI	GCNGC	1 cut(s)	169
FspBI	CTAG	2 cut(s)	275, 422
GlaI	GCGC	1 cut(s)	446
GluI	GCNGC	1 cut(s)	169
GsuI	CTGGAG	2 cut(s)	372, 410
HaeIII	GGCC	3 cut(s)	7, 171, 659
HapII	CCGG	2 cut(s)	429, 656
HhaI	GCGC	1 cut(s)	447
Hin1II	CATG	2 cut(s)	82, 99
Hin6I	GCGC	1 cut(s)	445
HinP1I	GCGC	1 cut(s)	445
HinfI	GANTC	2 cut(s)	31, 155
HpaII	CCGG	2 cut(s)	429, 656
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	4 cut(s)	198, 228, 547, 565
Hpy188III	TCNNGA	4 cut(s)	351, 389, 461, 478
Hpy8I	GTNNAC	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	18
HpyCH4III	ACNGT	2 cut(s)	268, 322
HpyCH4IV	ACGT	2 cut(s)	326, 694
HpyCH4V	TGCA	1 cut(s)	632
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 177, 425
HpyF3I	CTNAG	1 cut(s)	699
HpySE526I	ACGT	2 cut(s)	326, 694
Hsp92II	CATG	2 cut(s)	82, 99
HspAI	GCGC	1 cut(s)	445
Ksp22I	TGATCA	1 cut(s)	517
Kzo9I	GATC	7 cut(s)	271, 385, 449, 517, 652, 681, 685
LmnI	GCTCC	3 cut(s)	332, 370, 391
MaeI	CTAG	2 cut(s)	275, 422
MaeII	ACGT	2 cut(s)	326, 694
MaeIII	GTNAC	4 cut(s)	245, 322, 587, 596
MalI	GATC	7 cut(s)	273, 387, 451, 519, 654, 683, 687
MboI	GATC	7 cut(s)	271, 385, 449, 517, 652, 681, 685
MboII	GAAGA	5 cut(s)	56, 62, 476, 531, 534
MflI	RGATCY	1 cut(s)	652
MluCI	AATT	6 cut(s)	343, 374, 432, 468, 527, 645
MnlI	CCTC	2 cut(s)	672, 699
MseI	TTAA	2 cut(s)	36, 435
MspCI	CTTAAG	1 cut(s)	35
MspI	CCGG	2 cut(s)	429, 656
MwoI	GCNNNNNNNGC	3 cut(s)	118, 177, 425
NdeI	CATATG	1 cut(s)	611
NdeII	GATC	7 cut(s)	271, 385, 449, 517, 652, 681, 685
NlaIII	CATG	2 cut(s)	82, 99
NlaIV	GGNNCC	1 cut(s)	200
NmuCI	GTSAC	3 cut(s)	245, 322, 596
PcsI	WCGNNNNNNNCGW	1 cut(s)	555
PfeI	GAWTC	2 cut(s)	31, 155
PkrI	GCNGC	1 cut(s)	170
PshBI	ATTAAT	1 cut(s)	435
PspN4I	GGNNCC	1 cut(s)	200
PspPI	GGNCC	2 cut(s)	198, 264
PstI	CTGCAG	1 cut(s)	634
PsuI	RGATCY	1 cut(s)	652
RsaI	GTAC	1 cut(s)	497
RsaNI	GTAC	1 cut(s)	496
SaqAI	TTAA	2 cut(s)	36, 435
SatI	GCNGC	1 cut(s)	169
Sau3AI	GATC	7 cut(s)	271, 385, 449, 517, 652, 681, 685
Sau96I	GGNCC	2 cut(s)	198, 264
SetI	ASST	6 cut(s)	243, 329, 382, 539, 598, 697
SfcI	CTRYAG	2 cut(s)	287, 630
SinI	GGWCC	2 cut(s)	198, 264
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	6 cut(s)	343, 374, 432, 468, 527, 645
SsiI	CCGC	2 cut(s)	137, 168
SspMI	CTAG	2 cut(s)	275, 422
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	2 cut(s)	268, 322
TaiI	ACGT	2 cut(s)	329, 697
TaqI	TCGA	4 cut(s)	59, 460, 479, 684
TasI	AATT	6 cut(s)	343, 374, 432, 468, 527, 645
TatI	WGTACW	1 cut(s)	495
TauI	GCSGC	1 cut(s)	171
TfiI	GAWTC	2 cut(s)	31, 155
Tru1I	TTAA	2 cut(s)	36, 435
Tru9I	TTAA	2 cut(s)	36, 435
TscAI	CASTG	1 cut(s)	327
TseFI	GTSAC	3 cut(s)	245, 322, 596
Tsp45I	GTSAC	3 cut(s)	245, 322, 596
TspDTI	ATGAA	1 cut(s)	63
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	1 cut(s)	327
Vha464I	CTTAAG	1 cut(s)	35
VpaK11BI	GGWCC	2 cut(s)	198, 264
VspI	ATTAAT	1 cut(s)	435
XagI	CCTNNNNNAGG	1 cut(s)	664
XapI	RAATTY	1 cut(s)	468
XspI	CTAG	2 cut(s)	275, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.