Rh1AG352600

Protein GUCD1-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004784
Physical Location & Seq
Forward (+)
58839025 .. 58841499
2475 bp
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UTR
Exon/CDS
Intron
Rh1AG352600.1

Sequence Viewer

Length: 660 bp
ATGTGGCCTTCATATCTGCTGTTTAACAAGAGGGAAGATGTAGAAGCATCAGATGGTGAAAATTCTGATTTGGTAGAATCATACCCATTTGAACAGTCACCGAGAGATGGCAAATGCCGTCTTTCTGCCTTGCCATGCTCACACTTTGTTGAAGTCCCACACATAAACCAGCTATATTCTTGGGATTGTGGCCTCGCCTGCGTTCTGATGGTTTTTAGGACCGTTGGCATTGATAGCTGCGATATTCAGACATTGGCAGAGCTTTGTTGCACAAATAGCATTTGGACTGTTGATCTAGCATATCTGTTACAAAAGTTCTCTATTAGTTTTTCCTACTACACAGTAACATTTGGAGCAAACCCAAACTATTCTGGCGAGACATTTTACAAGGAGCAATTACCTAATGATTTGGTGCGAGTTGATACACTATTTCAAAAAGCACTGGAAGCTGGAATTAGGATAAAGTGCAGGTCAGTCAGTCGAGAAGAAATTTGTTTCTTGATTCTCTGTGGGAAATACATTGCCATAGTACTGGTTGATCAGTATAAGTTGAGCCCATCTAGTCAGGACAATGTTTTTATCTCAGACCGTTGTGGGAGCAACTCTGATTACACAGGTAGGACTATTTCTTTTGGATACACTGTTTCAGTAAGAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Guanylate_cyc_2

Protein Analysis

219

Amino Acids

24.82

Weight (kDa)

4.87

Isoelectric Point (pI)

36.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Guanylate_cyc_2 PF09778 52 - 209 1e-50 Guanylylate cyclase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 459
AcsI RAATTY 3 cut(s) 61, 489, 654
AfaI GTAC 1 cut(s) 531
AfiI CCNNNNNNNGG 1 cut(s) 107
AgsI TTSAA 3 cut(s) 92, 152, 434
AluBI AGCT 4 cut(s) 172, 237, 262, 449
AluI AGCT 4 cut(s) 172, 237, 262, 449
Alw26I GTCTC 1 cut(s) 371
AoxI GGCC 2 cut(s) 5, 190
ApeKI GCWGC 1 cut(s) 237
ApoI RAATTY 3 cut(s) 61, 489, 654
AspS9I GGNCC 1 cut(s) 219
AsuHPI GGTGA 2 cut(s) 68, 90
AvaII GGWCC 1 cut(s) 219
BanII GRGCYC 1 cut(s) 557
BbvI GCAGC 1 cut(s) 224
BccI CCATC 4 cut(s) 47, 101, 202, 565
BceAI ACGGC 1 cut(s) 102
BciVI GTATCC 1 cut(s) 629
BclI TGATCA 1 cut(s) 538
BcoDI GTCTC 1 cut(s) 371
BfaI CTAG 2 cut(s) 296, 561
BfuAI ACCTGC 1 cut(s) 459
BfuI GTATCC 1 cut(s) 629
BisI GCNGC 1 cut(s) 238
BlsI GCNGC 1 cut(s) 239
BmcAI AGTACT 1 cut(s) 531
Bme18I GGWCC 1 cut(s) 219
BmgT120I GGNCC 1 cut(s) 219
BmsI GCATC 1 cut(s) 56
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse1I ACTGG 2 cut(s) 447, 537
Bse3DI GCAATG 1 cut(s) 519
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMI GCAATG 1 cut(s) 519
BseMII CTCAG 1 cut(s) 597
BseNI ACTGG 2 cut(s) 447, 537
BseXI GCAGC 1 cut(s) 224
BsgI GTGCAG 1 cut(s) 487
BshFI GGCC 2 cut(s) 7, 192
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 107
BsmAI GTCTC 1 cut(s) 371
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 2 cut(s) 7, 192
Bsp1286I GDGCHC 1 cut(s) 557
Bsp143I GATC 2 cut(s) 292, 538
BspANI GGCC 2 cut(s) 7, 192
BspCNI CTCAG 1 cut(s) 596
BspMI ACCTGC 1 cut(s) 459
BsrDI GCAATG 1 cut(s) 519
BsrI ACTGG 2 cut(s) 447, 537
BssMI GATC 2 cut(s) 292, 538
Bst4CI ACNGT 6 cut(s) 96, 223, 289, 343, 590, 643
BstC8I GCNNGC 1 cut(s) 199
BstDEI CTNAG 1 cut(s) 583
BstKTI GATC 2 cut(s) 295, 541
BstMAI GTCTC 1 cut(s) 371
BstMBI GATC 2 cut(s) 292, 538
BstMWI GCNNNNNNNGC 4 cut(s) 198, 234, 276, 446
BstV1I GCAGC 1 cut(s) 224
BstXI CCANNNNNNTGG 1 cut(s) 532
BsuI GTATCC 1 cut(s) 629
BsuRI GGCC 2 cut(s) 7, 192
BtsIMutI CAGTG 2 cut(s) 440, 639
BveI ACCTGC 1 cut(s) 459
Cac8I GCNNGC 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 219
Csp6I GTAC 1 cut(s) 530
CviAII CATG 1 cut(s) 135
CviJI RGCY 7 cut(s) 7, 172, 192, 237, 262, 449, 555
CviKI_1 RGCY 7 cut(s) 7, 172, 192, 237, 262, 449, 555
CviQI GTAC 1 cut(s) 530
DdeI CTNAG 1 cut(s) 583
DpnI GATC 2 cut(s) 294, 540
DpnII GATC 2 cut(s) 292, 538
Eco24I GRGCYC 1 cut(s) 557
Eco47I GGWCC 1 cut(s) 219
EcoT38I GRGCYC 1 cut(s) 557
FaeI CATG 1 cut(s) 138
FaiI YATR 8 cut(s) 13, 82, 136, 164, 175, 301, 527, 546
FaqI GGGAC 1 cut(s) 140
FatI CATG 1 cut(s) 134
FbaI TGATCA 1 cut(s) 538
Fnu4HI GCNGC 1 cut(s) 238
FriOI GRGCYC 1 cut(s) 557
Fsp4HI GCNGC 1 cut(s) 238
FspBI CTAG 2 cut(s) 296, 561
GluI GCNGC 1 cut(s) 238
HaeIII GGCC 2 cut(s) 7, 192
Hin1II CATG 1 cut(s) 138
HinfI GANTC 2 cut(s) 77, 502
HphI GGTGA 2 cut(s) 68, 90
Hpy188I TCNGA 6 cut(s) 52, 67, 207, 249, 586, 607
Hpy188III TCNNGA 3 cut(s) 482, 499, 566
HpyAV CCTTC 1 cut(s) 18
HpyCH4III ACNGT 6 cut(s) 96, 223, 289, 343, 590, 643
HpyCH4V TGCA 2 cut(s) 270, 468
HpyF10VI GCNNNNNNNGC 4 cut(s) 198, 234, 276, 446
HpyF3I CTNAG 1 cut(s) 583
Hsp92II CATG 1 cut(s) 138
Ksp22I TGATCA 1 cut(s) 538
Kzo9I GATC 2 cut(s) 292, 538
LmnI GCTCC 3 cut(s) 353, 391, 597
LpnPI CCDG 9 cut(s) 182, 211, 357, 428, 435, 454, 518, 551, 600
Lsp1109I GCAGC 1 cut(s) 224
LweI GCATC 1 cut(s) 56
MaeI CTAG 2 cut(s) 296, 561
MaeIII GTNAC 3 cut(s) 96, 306, 343
MalI GATC 2 cut(s) 294, 540
MboI GATC 2 cut(s) 292, 538
MboII GAAGA 2 cut(s) 47, 497
MhlI GDGCHC 1 cut(s) 557
MluCI AATT 5 cut(s) 61, 395, 453, 489, 654
MnlI CCTC 2 cut(s) 24, 203
MseI TTAA 2 cut(s) 24, 658
MwoI GCNNNNNNNGC 4 cut(s) 198, 234, 276, 446
NdeII GATC 2 cut(s) 292, 538
NlaIII CATG 1 cut(s) 138
NmuCI GTSAC 1 cut(s) 96
PfeI GAWTC 2 cut(s) 77, 502
PkrI GCNGC 1 cut(s) 239
PspPI GGNCC 1 cut(s) 219
RsaI GTAC 1 cut(s) 531
RsaNI GTAC 1 cut(s) 530
SaqAI TTAA 2 cut(s) 24, 658
SatI GCNGC 1 cut(s) 238
Sau3AI GATC 2 cut(s) 292, 538
Sau96I GGNCC 1 cut(s) 219
ScaI AGTACT 1 cut(s) 531
SduI GDGCHC 1 cut(s) 557
SetI ASST 7 cut(s) 174, 239, 264, 403, 451, 473, 619
SfaNI GCATC 1 cut(s) 56
SinI GGWCC 1 cut(s) 219
Sse9I AATT 5 cut(s) 61, 395, 453, 489, 654
SspMI CTAG 2 cut(s) 296, 561
TaaI ACNGT 6 cut(s) 96, 223, 289, 343, 590, 643
TaqI TCGA 1 cut(s) 481
TasI AATT 5 cut(s) 61, 395, 453, 489, 654
TatI WGTACW 1 cut(s) 529
TfiI GAWTC 2 cut(s) 77, 502
Tru1I TTAA 2 cut(s) 24, 658
Tru9I TTAA 2 cut(s) 24, 658
TscAI CASTG 2 cut(s) 447, 646
TseFI GTSAC 1 cut(s) 96
TseI GCWGC 1 cut(s) 237
Tsp45I GTSAC 1 cut(s) 96
TspRI CASTG 2 cut(s) 447, 646
VpaK11BI GGWCC 1 cut(s) 219
XapI RAATTY 3 cut(s) 61, 489, 654
XspI CTAG 2 cut(s) 296, 561
ZrmI AGTACT 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.