MD08G1033900.v1.1

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0017382
Physical Location & Seq
Reverse (-)
2396273 .. 2397291
1019 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1033900.v1.1.491

Sequence Viewer

Length: 993 bp
ATGGCTAAACGCTACTTTAAGCTCAAATTCCCCCGAGTTATTTCCCTAATCCAATTCTGTCGTCCCAAGCACCACTCCACTTCACCGGCAATATACCGGCTGTCCCCTGTAAACGCCAAAGCCATGGACATCAAGTTCCCCAACCTCCCGGCCCCGCCGCCGTCCACACCGGAGCACCACTCCCTACAGCACTACGTGTTCTCCAAGCCCGCAAAATCCATCGGCTGCGGATCGTGCCGGTCCCGGTTATCCACGCGATTCATCTCCGATTGTAACGTTGAAATCAAATCATCCGCGGATAATGACGAACTTAATCACAATTTTATGCCGCCGATTTCGGAAACCGAGAAGTATTACAGGAAGAAGCGGAAGGAGGAGAAGACGAAGACGAAGAAGAAATCGAAACCGAAAGCGAAGCCGGAGCTTCCGTTTATAAATGCTTCTTCGGGAAACTGGTCCAGCGGCGAATTCGACGGCAGCCAAGAGAACAGCGAAGAAAGCGGAACTCCGATCTACTCTTCCAGCAGCTTCTCGAATGAATTCTCGCTGGTGATGGAGACGATAGGCAAGAAGATCTCGGAATCGCACAAGCAGAGCAGCAAGAAGAGACCTAACGGTGGCGACTACGATAAGGTTCGTAGATCGAATTCAGATTTGGATTCGAAGAAACCGGCGGCGACTGGCGGCGAGTTCGGAAAGATAAAGACGGTGCTGCGGCCGATGAGGGCGTGCAGAGGGGGAGAGGGGAAGGTGAGGGAGAGCGTGGCGGTGGTGAAGAAGTCGGAGGATCCCTACGAGGATTTCAGGCGGTCGATGATGGAGATGATCATGGAGAAGCAGATCTTCGAGGCCAAGGAGTTGGAGGAGCTCCTCCGTTGCTTCTTGACTTTGAATTCCCGCCACTACCAGGATGTTATCGTGGAGGCGTTTTCTGAGATATGGGAGCTCTTGTTTTCTGACCCTTCGGACCAAGGGGGAAATTTGAAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ovate

Protein Analysis

331

Amino Acids

37.48

Weight (kDa)

9.37

Isoelectric Point (pI)

57.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 261 - 317 3e-25 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017382)

Species Orthologous Gene IDs
malus_domestica MD08G1033900.v1.1 MD15G1030700.v1.1
prunus_persica Prupe.1G381100_v2.0.a1
pyrus_communis pycom15g02680
rosa_chinensis RchiOBHm_Chr6g0300811
rosa_laevigata RLG00000011299
rosa_multiflora Rmu_sc0008947.1_g000002
rosa_roxburghii Rroxscaffold_7G00167390
rosa_rugosa Rorug06G0299300
rosa_samantha Rh6AG412300 Rh6BG419500 Rh6CG427000 Rh6DG412300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 434
AccII CGCG 2 cut(s) 256, 296
AclI AACGTT 1 cut(s) 276
AclWI GGATC 3 cut(s) 238, 782, 795
AcoI YGGCCR 1 cut(s) 716
AcsI RAATTY 7 cut(s) 26, 467, 539, 646, 892, 979, 987
AdeI CACNNNGTG 1 cut(s) 196
AfiI CCNNNNNNNGG 2 cut(s) 617, 907
AflIII ACRYGT 1 cut(s) 195
AgsI TTSAA 3 cut(s) 281, 892, 985
AjnI CCWGG 1 cut(s) 906
AjuI GAANNNNNNNTTGG 2 cut(s) 638, 670
AloI GAACNNNNNNTCC 2 cut(s) 119, 151
AluBI AGCT 5 cut(s) 22, 424, 528, 868, 946
AluI AGCT 5 cut(s) 22, 424, 528, 868, 946
Alw21I GWGCWC 3 cut(s) 177, 870, 948
Alw26I GTCTC 2 cut(s) 551, 601
AlwI GGATC 3 cut(s) 238, 782, 795
Ama87I CYCGRG 1 cut(s) 33
AoxI GGCC 3 cut(s) 150, 716, 849
ApeKI GCWGC 5 cut(s) 225, 477, 525, 597, 712
ApoI RAATTY 7 cut(s) 26, 467, 539, 646, 892, 979, 987
Asp700I GAANNNNTTC 1 cut(s) 539
AspS9I GGNCC 4 cut(s) 151, 240, 456, 967
AsuC2I CCSGG 2 cut(s) 149, 244
AsuHPI GGTGA 4 cut(s) 75, 562, 763, 784
AsuII TTCGAA 1 cut(s) 662
AvaI CYCGRG 1 cut(s) 33
AvaII GGWCC 3 cut(s) 240, 456, 967
BamHI GGATCC 1 cut(s) 787
BanII GRGCYC 2 cut(s) 870, 948
BbsI GAAGAC 2 cut(s) 386, 392
Bbv12I GWGCWC 3 cut(s) 177, 870, 948
BbvI GCAGC 5 cut(s) 212, 489, 537, 609, 699
BccI CCATC 3 cut(s) 227, 547, 811
BceAI ACGGC 2 cut(s) 145, 490
BciT130I CCWGG 1 cut(s) 908
BclI TGATCA 1 cut(s) 825
BcnI CCSGG 2 cut(s) 149, 244
BcoDI GTCTC 2 cut(s) 551, 601
BfmI CTRYAG 1 cut(s) 185
BglII AGATCT 2 cut(s) 573, 840
Bme1390I CCNGG 3 cut(s) 149, 244, 908
Bme18I GGWCC 3 cut(s) 240, 456, 967
BmeT110I CYCGRG 1 cut(s) 33
BmgT120I GGNCC 4 cut(s) 151, 240, 456, 967
BmiI GGNNCC 3 cut(s) 153, 242, 789
BmrFI CCNGG 3 cut(s) 149, 244, 908
BpiI GAAGAC 2 cut(s) 386, 392
BplI GAGNNNNNCTC 2 cut(s) 164, 196
Bpu14I TTCGAA 1 cut(s) 662
BpuMI CCSGG 2 cut(s) 149, 244
BsaAI YACGTR 1 cut(s) 196
BsaI GGTCTC 1 cut(s) 601
BsaJI CCNNGG 4 cut(s) 123, 294, 852, 970
BsaWI WCCGGW 1 cut(s) 169
BsaXI ACNNNNNCTCC 6 cut(s) 185, 215, 413, 443, 935, 965
Bsc4I CCNNNNNNNGG 2 cut(s) 617, 907
Bse118I RCCGGY 4 cut(s) 85, 96, 237, 670
Bse1I ACTGG 2 cut(s) 458, 685
BseBI CCWGG 1 cut(s) 908
BseDI CCNNGG 4 cut(s) 123, 294, 852, 970
BseGI GGATG 2 cut(s) 290, 916
BseLI CCNNNNNNNGG 2 cut(s) 617, 907
BseMII CTCAG 1 cut(s) 924
BseNI ACTGG 2 cut(s) 458, 685
BseRI GAGGAG 3 cut(s) 389, 860, 878
BseX3I CGGCCG 1 cut(s) 716
BseXI GCAGC 5 cut(s) 212, 489, 537, 609, 699
BsgI GTGCAG 1 cut(s) 751
Bsh1236I CGCG 2 cut(s) 256, 296
Bsh1285I CGRYCG 2 cut(s) 719, 812
BshFI GGCC 3 cut(s) 152, 718, 851
BsiEI CGRYCG 2 cut(s) 719, 812
BsiHKAI GWGCWC 3 cut(s) 177, 870, 948
BsiHKCI CYCGRG 1 cut(s) 33
BsiSI CCGG 8 cut(s) 86, 97, 149, 170, 238, 244, 419, 671
BslFI GGGAC 3 cut(s) 48, 88, 226
BslI CCNNNNNNNGG 2 cut(s) 617, 907
BsmAI GTCTC 2 cut(s) 551, 601
BsmBI CGTCTC 1 cut(s) 551
BsmFI GGGAC 3 cut(s) 48, 88, 226
BsnI GGCC 3 cut(s) 152, 718, 851
Bso31I GGTCTC 1 cut(s) 601
BsoBI CYCGRG 1 cut(s) 33
Bsp119I TTCGAA 1 cut(s) 662
Bsp1286I GDGCHC 3 cut(s) 177, 870, 948
Bsp143I GATC 7 cut(s) 230, 510, 573, 641, 787, 825, 840
Bsp19I CCATGG 1 cut(s) 123
BspANI GGCC 3 cut(s) 152, 718, 851
BspCNI CTCAG 1 cut(s) 925
BspFNI CGCG 2 cut(s) 256, 296
BspLI GGNNCC 3 cut(s) 153, 242, 789
BspPI GGATC 3 cut(s) 238, 782, 795
BspT104I TTCGAA 1 cut(s) 662
BspTNI GGTCTC 1 cut(s) 601
BsrFI RCCGGY 4 cut(s) 85, 96, 237, 670
BsrI ACTGG 2 cut(s) 458, 685
BssAI RCCGGY 4 cut(s) 85, 96, 237, 670
BssECI CCNNGG 4 cut(s) 123, 294, 852, 970
BssMI GATC 7 cut(s) 230, 510, 573, 641, 787, 825, 840
BssT1I CCWWGG 3 cut(s) 123, 852, 970
Bst2UI CCWGG 1 cut(s) 908
Bst4CI ACNGT 2 cut(s) 617, 709
Bst6I CTCTTC 2 cut(s) 523, 599
BstBAI YACGTR 1 cut(s) 196
BstBI TTCGAA 1 cut(s) 662
BstC8I GCNNGC 2 cut(s) 210, 730
BstDEI CTNAG 1 cut(s) 933
BstDSI CCRYGG 2 cut(s) 123, 294
BstF5I GGATG 2 cut(s) 290, 916
BstFNI CGCG 2 cut(s) 256, 296
BstKTI GATC 7 cut(s) 233, 513, 576, 644, 790, 828, 843
BstMAI GTCTC 2 cut(s) 551, 601
BstMBI GATC 7 cut(s) 230, 510, 573, 641, 787, 825, 840
BstMCI CGRYCG 2 cut(s) 719, 812
BstMWI GCNNNNNNNGC 2 cut(s) 234, 498
BstNI CCWGG 1 cut(s) 908
BstSCI CCNGG 3 cut(s) 147, 242, 906
BstSFI CTRYAG 1 cut(s) 185
BstUI CGCG 2 cut(s) 256, 296
BstV1I GCAGC 5 cut(s) 212, 489, 537, 609, 699
BstV2I GAAGAC 2 cut(s) 386, 392
BstX2I RGATCY 3 cut(s) 573, 787, 840
BstXI CCANNNNNNTGG 2 cut(s) 124, 859
BstYI RGATCY 3 cut(s) 573, 787, 840
BstZI CGGCCG 1 cut(s) 716
BsuRI GGCC 3 cut(s) 152, 718, 851
BtgI CCRYGG 2 cut(s) 123, 294
BtsCI GGATG 2 cut(s) 290, 916
Cac8I GCNNGC 2 cut(s) 210, 730
Cfr10I RCCGGY 4 cut(s) 85, 96, 237, 670
Cfr13I GGNCC 4 cut(s) 151, 240, 456, 967
Cfr42I CCGCGG 1 cut(s) 297
CviAII CATG 2 cut(s) 124, 829
DdeI CTNAG 1 cut(s) 933
DpnI GATC 7 cut(s) 232, 512, 575, 643, 789, 827, 842
DpnII GATC 7 cut(s) 230, 510, 573, 641, 787, 825, 840
DraIII CACNNNGTG 1 cut(s) 196
EaeI YGGCCR 1 cut(s) 716
EagI CGGCCG 1 cut(s) 716
Eam1104I CTCTTC 2 cut(s) 523, 599
EarI CTCTTC 2 cut(s) 523, 599
Ecl136II GAGCTC 2 cut(s) 868, 946
EclXI CGGCCG 1 cut(s) 716
Eco130I CCWWGG 3 cut(s) 123, 852, 970
Eco24I GRGCYC 2 cut(s) 870, 948
Eco31I GGTCTC 1 cut(s) 601
Eco47I GGWCC 3 cut(s) 240, 456, 967
Eco52I CGGCCG 1 cut(s) 716
Eco53kI GAGCTC 2 cut(s) 868, 946
Eco88I CYCGRG 1 cut(s) 33
EcoICRI GAGCTC 2 cut(s) 868, 946
EcoRI GAATTC 4 cut(s) 467, 539, 646, 892
EcoRII CCWGG 1 cut(s) 906
EcoT14I CCWWGG 3 cut(s) 123, 852, 970
EcoT38I GRGCYC 2 cut(s) 870, 948
ErhI CCWWGG 3 cut(s) 123, 852, 970
Esp3I CGTCTC 1 cut(s) 551
FaeI CATG 2 cut(s) 127, 832
FaiI YATR 6 cut(s) 94, 125, 326, 434, 830, 940
FalI AAGNNNNNCTT 2 cut(s) 827, 859
FaqI GGGAC 3 cut(s) 48, 88, 226
FatI CATG 2 cut(s) 123, 828
FauI CCCGC 3 cut(s) 162, 217, 905
FbaI TGATCA 1 cut(s) 825
FokI GGATG 2 cut(s) 277, 923
FriOI GRGCYC 2 cut(s) 870, 948
HaeIII GGCC 3 cut(s) 152, 718, 851
HapII CCGG 8 cut(s) 86, 97, 149, 170, 238, 244, 419, 671
Hin1II CATG 2 cut(s) 127, 832
HinfI GANTC 3 cut(s) 258, 581, 659
HpaII CCGG 8 cut(s) 86, 97, 149, 170, 238, 244, 419, 671
HphI GGTGA 4 cut(s) 75, 562, 763, 784
Hpy166II GTNNAC 2 cut(s) 112, 165
Hpy188III TCNNGA 3 cut(s) 447, 532, 883
Hpy8I GTNNAC 2 cut(s) 112, 165
Hpy99I CGWCG 1 cut(s) 476
HpyAV CCTTC 3 cut(s) 364, 742, 972
HpyCH4III ACNGT 2 cut(s) 617, 709
HpyCH4IV ACGT 2 cut(s) 195, 276
HpyCH4V TGCA 1 cut(s) 732
HpyF10VI GCNNNNNNNGC 2 cut(s) 234, 498
HpyF3I CTNAG 1 cut(s) 933
HpySE526I ACGT 2 cut(s) 195, 276
Hsp92II CATG 2 cut(s) 127, 832
Ksp22I TGATCA 1 cut(s) 825
KspI CCGCGG 1 cut(s) 297
Kzo9I GATC 7 cut(s) 230, 510, 573, 641, 787, 825, 840
LmnI GCTCC 5 cut(s) 172, 421, 865, 873, 943
Lsp1109I GCAGC 5 cut(s) 212, 489, 537, 609, 699
MaeII ACGT 2 cut(s) 195, 276
MaeIII GTNAC 1 cut(s) 272
MalI GATC 7 cut(s) 232, 512, 575, 643, 789, 827, 842
MboI GATC 7 cut(s) 230, 510, 573, 641, 787, 825, 840
MflI RGATCY 3 cut(s) 573, 787, 840
MhlI GDGCHC 3 cut(s) 177, 870, 948
MluCI AATT 9 cut(s) 26, 53, 319, 467, 539, 646, 892, 979, 987
MmeI TCCRAC 2 cut(s) 762, 840
MroXI GAANNNNTTC 1 cut(s) 539
MseI TTAA 2 cut(s) 18, 312
MspA1I CMGCKG 2 cut(s) 296, 462
MspI CCGG 8 cut(s) 86, 97, 149, 170, 238, 244, 419, 671
MspR9I CCNGG 3 cut(s) 149, 244, 908
MvaI CCWGG 1 cut(s) 908
MvnI CGCG 2 cut(s) 256, 296
MwoI GCNNNNNNNGC 2 cut(s) 234, 498
NciI CCSGG 2 cut(s) 149, 244
NcoI CCATGG 1 cut(s) 123
NdeII GATC 7 cut(s) 230, 510, 573, 641, 787, 825, 840
NlaIII CATG 2 cut(s) 127, 832
NlaIV GGNNCC 3 cut(s) 153, 242, 789
NspV TTCGAA 1 cut(s) 662
PdmI GAANNNNTTC 1 cut(s) 539
PfeI GAWTC 3 cut(s) 258, 581, 659
Ppu21I YACGTR 1 cut(s) 196
PsiI TTATAA 1 cut(s) 434
Psp124BI GAGCTC 2 cut(s) 870, 948
Psp1406I AACGTT 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 906
PspGI CCWGG 1 cut(s) 906
PspN4I GGNNCC 3 cut(s) 153, 242, 789
PspPI GGNCC 4 cut(s) 151, 240, 456, 967
PsuI RGATCY 3 cut(s) 573, 787, 840
SacI GAGCTC 2 cut(s) 870, 948
SacII CCGCGG 1 cut(s) 297
SaqAI TTAA 2 cut(s) 18, 312
Sau3AI GATC 7 cut(s) 230, 510, 573, 641, 787, 825, 840
Sau96I GGNCC 4 cut(s) 151, 240, 456, 967
ScrFI CCNGG 3 cut(s) 149, 244, 908
SduI GDGCHC 3 cut(s) 177, 870, 948
SfcI CTRYAG 1 cut(s) 185
Sfr303I CCGCGG 1 cut(s) 297
SfuI TTCGAA 1 cut(s) 662
SgrBI CCGCGG 1 cut(s) 297
SinI GGWCC 3 cut(s) 240, 456, 967
Sse9I AATT 9 cut(s) 26, 53, 319, 467, 539, 646, 892, 979, 987
SstI GAGCTC 2 cut(s) 870, 948
StyD4I CCNGG 3 cut(s) 147, 242, 906
StyI CCWWGG 3 cut(s) 123, 852, 970
TaaI ACNGT 2 cut(s) 617, 709
TaiI ACGT 2 cut(s) 198, 279
TaqI TCGA 7 cut(s) 401, 471, 533, 644, 662, 812, 846
TasI AATT 9 cut(s) 26, 53, 319, 467, 539, 646, 892, 979, 987
TauI GCSGC 6 cut(s) 160, 331, 465, 677, 687, 718
TfiI GAWTC 3 cut(s) 258, 581, 659
Tru1I TTAA 2 cut(s) 18, 312
Tru9I TTAA 2 cut(s) 18, 312
TseI GCWGC 5 cut(s) 225, 477, 525, 597, 712
TspDTI ATGAA 2 cut(s) 250, 552
TspGWI ACGGA 2 cut(s) 417, 863
VpaK11BI GGWCC 3 cut(s) 240, 456, 967
XapI RAATTY 7 cut(s) 26, 467, 539, 646, 892, 979, 987
XmnI GAANNNNTTC 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.