Rroxscaffold_7G00167390

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0017382
Physical Location & Seq
Forward (+)
8527223 .. 8528230
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00167390.1

Sequence Viewer

Length: 1008 bp
ATGGATAAACGCTTCAAGCTCAAGCTCAAATTCCCTCGAGTTATTCCTATGATCCACTTTTGCCGTCCTAAACACAACCCCAATAATCCGGTGGTAGTTCCAGCAATCTACCGTCTGTCCCCGATGAACCCGAAAGTCGAGGACATCGGCTACCCCAGCATCATCCTGCCGGGACCACCACCATCAACACCGGAGAACACTTCCGTCAAGCGCCACGTGTCCTCCGGCACCACGGCGGTCGGCTGCAGATGCAGCGGGTCTAGGTCATGGACACGAGACCTCTTGTACTCCAGCATCGAATCACCAGAGTATGAGGTTAATGCAACGCCGCATTTGGTGACTGAAAAGTACTACAACGATAAGAAGAACAAGAGCAGCAATGAGAAGAGGAGGAAGAAACCGAAACCGAAAGCGAAAGCCAGTCTTCCTTCATCGGAAAGCAGTAACCGCTGGTTTAGCAGCGAAGAGGAGAATGAAGAGAGCGAAACCCCAATATATTCTTCGAGAAGCTTCTCGACAGACTTTTCAGCTGTGCTTGAGACTATAAGCGAGGTATCAGACCAACAAAGTAGCAAAACGAAGAAGAGCAATTATAAGGTAAGGAGATTGAACCGAGGCGTGTCAAAGAAGCGGAAAGAAGCAGAGAAATCATCAACTGGTGAGACAGGGAAGATCAAGTCGGTGTTCCAGCCGATGAGAGTGTGCAGGAGACAAGGGATGGTAAAGGAGAGCATGGCAGTGGTGAAGAAGTCGGAGGATCCTTTCGAGGACTTCAAGAAGTCGATGATGGAGATGATAATGGAGAAGCAGATTTTCGAGGCAAGAGAATTAGAGGAGCTGCTACACTGCTTCCTGACCTTGAACTCGCGCCATTATCAAGGAGTCATAGTTGAGGCCTTCTCAGAGATATGGAAGCTCGTGTTTTCAGACACACCCTCAACGTCAAGTGAATTCTACTGTTTTGCGGATAAGTCCCAAACAGACCAACTGTCCAAGTTGAAGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ovate

Protein Analysis

335

Amino Acids

38.4

Weight (kDa)

9.46

Isoelectric Point (pI)

55.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 251 - 305 5.9e-24 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017382)

Species Orthologous Gene IDs
malus_domestica MD08G1033900.v1.1 MD15G1030700.v1.1
prunus_persica Prupe.1G381100_v2.0.a1
pyrus_communis pycom15g02680
rosa_chinensis RchiOBHm_Chr6g0300811
rosa_laevigata RLG00000011299
rosa_multiflora Rmu_sc0008947.1_g000002
rosa_roxburghii Rroxscaffold_7G00167390
rosa_rugosa Rorug06G0299300
rosa_samantha Rh6AG412300 Rh6BG419500 Rh6CG427000 Rh6DG412300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 594
AccB1I GGYRCC 1 cut(s) 227
AccII CGCG 1 cut(s) 868
AciI CCGC 6 cut(s) 236, 255, 329, 448, 631, 965
AclWI GGATC 3 cut(s) 46, 752, 765
AcsI RAATTY 2 cut(s) 29, 950
AcvI CACGTG 1 cut(s) 217
AfaI GTAC 2 cut(s) 287, 350
AflIII ACRYGT 1 cut(s) 216
AgsI TTSAA 5 cut(s) 16, 610, 775, 862, 1000
AhdI GACNNNNNGTC 1 cut(s) 988
AjuI GAANNNNNNNTTGG 2 cut(s) 484, 516
AluBI AGCT 6 cut(s) 19, 25, 510, 530, 838, 916
AluI AGCT 6 cut(s) 19, 25, 510, 530, 838, 916
Alw26I GTCTC 4 cut(s) 270, 533, 656, 703
AlwI GGATC 3 cut(s) 46, 752, 765
Ama87I CYCGRG 1 cut(s) 36
AoxI GGCC 1 cut(s) 894
ApeKI GCWGC 5 cut(s) 243, 252, 375, 459, 838
ApoI RAATTY 2 cut(s) 29, 950
AspLEI GCGC 2 cut(s) 213, 870
AspS9I GGNCC 1 cut(s) 173
AsuC2I CCSGG 1 cut(s) 171
AsuHPI GGTGA 4 cut(s) 294, 349, 671, 754
AvaI CYCGRG 1 cut(s) 36
AvaII GGWCC 1 cut(s) 173
BamHI GGATCC 1 cut(s) 757
BanI GGYRCC 1 cut(s) 227
BauI CACGAG 2 cut(s) 273, 917
BbrPI CACGTG 1 cut(s) 217
BbsI GAAGAC 1 cut(s) 416
BbvI GCAGC 5 cut(s) 230, 264, 387, 471, 825
BccI CCATC 3 cut(s) 190, 712, 781
BceAI ACGGC 2 cut(s) 48, 249
BcnI CCSGG 1 cut(s) 171
BcoDI GTCTC 4 cut(s) 270, 533, 656, 703
BfaI CTAG 1 cut(s) 261
BfmI CTRYAG 1 cut(s) 244
BfoI RGCGCY 1 cut(s) 214
BglII AGATCT 1 cut(s) 1002
BisI GCNGC 6 cut(s) 244, 253, 329, 376, 460, 839
BlsI GCNGC 6 cut(s) 245, 254, 330, 377, 461, 840
BmcAI AGTACT 1 cut(s) 350
Bme1390I CCNGG 1 cut(s) 171
Bme18I GGWCC 1 cut(s) 173
BmeRI GACNNNNNGTC 1 cut(s) 988
BmeT110I CYCGRG 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 3 cut(s) 174, 229, 759
BmrFI CCNGG 1 cut(s) 171
BmsI GCATC 3 cut(s) 168, 239, 303
BpiI GAAGAC 1 cut(s) 416
BplI GAGNNNNNCTC 2 cut(s) 884, 916
BpmI CTGGAG 1 cut(s) 274
BpuEI CTTGAG 2 cut(s) 5, 557
BpuMI CCSGG 1 cut(s) 171
BsaAI YACGTR 1 cut(s) 217
BsaI GGTCTC 1 cut(s) 270
BsaJI CCNNGG 2 cut(s) 231, 613
BsaWI WCCGGW 2 cut(s) 88, 190
BsaXI ACNNNNNCTCC 4 cut(s) 206, 236, 873, 903
Bse1I ACTGG 2 cut(s) 420, 661
Bse3DI GCAATG 1 cut(s) 385
BseDI CCNNGG 2 cut(s) 231, 613
BseGI GGATG 2 cut(s) 162, 723
BseMI GCAATG 1 cut(s) 385
BseMII CTCAG 1 cut(s) 915
BseNI ACTGG 2 cut(s) 420, 661
BseRI GAGGAG 3 cut(s) 403, 482, 848
BseXI GCAGC 5 cut(s) 230, 264, 387, 471, 825
BseYI CCCAGC 1 cut(s) 155
BsgI GTGCAG 1 cut(s) 724
Bsh1236I CGCG 1 cut(s) 868
Bsh1285I CGRYCG 1 cut(s) 240
BshFI GGCC 1 cut(s) 896
BshNI GGYRCC 1 cut(s) 227
BsiEI CGRYCG 1 cut(s) 240
BsiHKCI CYCGRG 1 cut(s) 36
BsiSI CCGG 4 cut(s) 89, 170, 191, 225
BslFI GGGAC 3 cut(s) 103, 186, 958
BsmAI GTCTC 4 cut(s) 270, 533, 656, 703
BsmFI GGGAC 3 cut(s) 103, 186, 958
BsnI GGCC 1 cut(s) 896
Bso31I GGTCTC 1 cut(s) 270
BsoBI CYCGRG 1 cut(s) 36
Bsp143I GATC 4 cut(s) 51, 672, 757, 1002
BspACI CCGC 6 cut(s) 236, 255, 329, 448, 631, 965
BspANI GGCC 1 cut(s) 896
BspCNI CTCAG 1 cut(s) 914
BspFNI CGCG 1 cut(s) 868
BspLI GGNNCC 3 cut(s) 174, 229, 759
BspMAI CTGCAG 1 cut(s) 248
BspPI GGATC 3 cut(s) 46, 752, 765
BspQI GCTCTTC 1 cut(s) 578
BspT107I GGYRCC 1 cut(s) 227
BspTNI GGTCTC 1 cut(s) 270
BsrDI GCAATG 1 cut(s) 385
BsrI ACTGG 2 cut(s) 420, 661
BssECI CCNNGG 2 cut(s) 231, 613
BssMI GATC 4 cut(s) 51, 672, 757, 1002
BssSI CACGAG 2 cut(s) 273, 917
Bst2BI CACGAG 2 cut(s) 273, 917
Bst4CI ACNGT 3 cut(s) 113, 959, 990
Bst6I CTCTTC 4 cut(s) 380, 459, 471, 578
BstBAI YACGTR 1 cut(s) 217
BstDEI CTNAG 1 cut(s) 901
BstDSI CCRYGG 1 cut(s) 231
BstF5I GGATG 2 cut(s) 162, 723
BstFNI CGCG 1 cut(s) 868
BstH2I RGCGCY 1 cut(s) 214
BstHHI GCGC 2 cut(s) 213, 870
BstKTI GATC 4 cut(s) 54, 675, 760, 1005
BstMAI GTCTC 4 cut(s) 270, 533, 656, 703
BstMBI GATC 4 cut(s) 51, 672, 757, 1002
BstMCI CGRYCG 1 cut(s) 240
BstMWI GCNNNNNNNGC 5 cut(s) 156, 249, 252, 447, 456
BstSCI CCNGG 1 cut(s) 169
BstSFI CTRYAG 1 cut(s) 244
BstUI CGCG 1 cut(s) 868
BstV1I GCAGC 5 cut(s) 230, 264, 387, 471, 825
BstV2I GAAGAC 1 cut(s) 416
BstX2I RGATCY 2 cut(s) 757, 1002
BstYI RGATCY 2 cut(s) 757, 1002
BsuRI GGCC 1 cut(s) 896
BtgI CCRYGG 1 cut(s) 231
BtsCI GGATG 2 cut(s) 162, 723
BtsI GCAGTG 2 cut(s) 744, 844
BtsIMutI CAGTG 2 cut(s) 744, 844
CfoI GCGC 2 cut(s) 213, 870
Cfr13I GGNCC 1 cut(s) 173
Csp6I GTAC 2 cut(s) 286, 349
CviAII CATG 2 cut(s) 267, 733
CviQI GTAC 2 cut(s) 286, 349
DdeI CTNAG 1 cut(s) 901
DpnI GATC 4 cut(s) 53, 674, 759, 1004
DpnII GATC 4 cut(s) 51, 672, 757, 1002
DriI GACNNNNNGTC 1 cut(s) 988
Eam1104I CTCTTC 4 cut(s) 380, 459, 471, 578
Eam1105I GACNNNNNGTC 1 cut(s) 988
EarI CTCTTC 4 cut(s) 380, 459, 471, 578
Eco147I AGGCCT 1 cut(s) 896
Eco31I GGTCTC 1 cut(s) 270
Eco47I GGWCC 1 cut(s) 173
Eco72I CACGTG 1 cut(s) 217
Eco88I CYCGRG 1 cut(s) 36
EcoRI GAATTC 1 cut(s) 950
FaeI CATG 2 cut(s) 270, 736
FaiI YATR 9 cut(s) 50, 268, 312, 496, 545, 594, 734, 887, 910
FalI AAGNNNNNCTT 2 cut(s) 408, 440
FaqI GGGAC 3 cut(s) 103, 186, 958
FatI CATG 2 cut(s) 266, 732
FauI CCCGC 1 cut(s) 248
Fnu4HI GCNGC 6 cut(s) 244, 253, 329, 376, 460, 839
FokI GGATG 2 cut(s) 149, 730
Fsp4HI GCNGC 6 cut(s) 244, 253, 329, 376, 460, 839
FspBI CTAG 1 cut(s) 261
GlaI GCGC 2 cut(s) 212, 869
GluI GCNGC 6 cut(s) 244, 253, 329, 376, 460, 839
GsaI CCCAGC 1 cut(s) 159
GsuI CTGGAG 1 cut(s) 274
HaeII RGCGCY 1 cut(s) 214
HaeIII GGCC 1 cut(s) 896
HapII CCGG 4 cut(s) 89, 170, 191, 225
HhaI GCGC 2 cut(s) 213, 870
Hin1II CATG 2 cut(s) 270, 736
Hin6I GCGC 2 cut(s) 211, 868
HinP1I GCGC 2 cut(s) 211, 868
HindIII AAGCTT 1 cut(s) 508
HinfI GANTC 2 cut(s) 299, 882
HpaII CCGG 4 cut(s) 89, 170, 191, 225
HphI GGTGA 4 cut(s) 294, 349, 671, 754
Hpy188I TCNGA 6 cut(s) 436, 559, 754, 904, 928, 1007
Hpy188III TCNNGA 4 cut(s) 504, 514, 775, 853
HpyAV CCTTC 2 cut(s) 438, 907
HpyCH4III ACNGT 3 cut(s) 113, 959, 990
HpyCH4IV ACGT 2 cut(s) 216, 941
HpyCH4V TGCA 4 cut(s) 246, 252, 323, 705
HpyF10VI GCNNNNNNNGC 5 cut(s) 156, 249, 252, 447, 456
HpyF3I CTNAG 1 cut(s) 901
HpySE526I ACGT 2 cut(s) 216, 941
Hsp92II CATG 2 cut(s) 270, 736
HspAI GCGC 2 cut(s) 211, 868
Kzo9I GATC 4 cut(s) 51, 672, 757, 1002
LguI GCTCTTC 1 cut(s) 578
LmnI GCTCC 1 cut(s) 835
Lsp1109I GCAGC 5 cut(s) 230, 264, 387, 471, 825
LweI GCATC 3 cut(s) 168, 239, 303
MaeI CTAG 1 cut(s) 261
MaeII ACGT 2 cut(s) 216, 941
MaeIII GTNAC 2 cut(s) 337, 443
MalI GATC 4 cut(s) 53, 674, 759, 1004
MboI GATC 4 cut(s) 51, 672, 757, 1002
MflI RGATCY 2 cut(s) 757, 1002
MluCI AATT 4 cut(s) 29, 589, 827, 950
MlyI GAGTC 1 cut(s) 891
MmeI TCCRAC 1 cut(s) 732
MseI TTAA 1 cut(s) 318
MslI CAYNNNNRTG 1 cut(s) 737
MspA1I CMGCKG 3 cut(s) 255, 450, 530
MspI CCGG 4 cut(s) 89, 170, 191, 225
MspR9I CCNGG 1 cut(s) 171
MvnI CGCG 1 cut(s) 868
MwoI GCNNNNNNNGC 5 cut(s) 156, 249, 252, 447, 456
NciI CCSGG 1 cut(s) 171
NdeII GATC 4 cut(s) 51, 672, 757, 1002
NlaIII CATG 2 cut(s) 270, 736
NlaIV GGNNCC 3 cut(s) 174, 229, 759
NmuCI GTSAC 1 cut(s) 337
PaeR7I CTCGAG 1 cut(s) 36
PceI AGGCCT 1 cut(s) 896
PciSI GCTCTTC 1 cut(s) 578
PfeI GAWTC 1 cut(s) 299
PkrI GCNGC 6 cut(s) 245, 254, 330, 377, 461, 840
PleI GAGTC 1 cut(s) 890
PmaCI CACGTG 1 cut(s) 217
PmlI CACGTG 1 cut(s) 217
PpsI GAGTC 1 cut(s) 890
Ppu21I YACGTR 1 cut(s) 217
PsiI TTATAA 1 cut(s) 594
PspCI CACGTG 1 cut(s) 217
PspFI CCCAGC 1 cut(s) 155
PspN4I GGNNCC 3 cut(s) 174, 229, 759
PspPI GGNCC 1 cut(s) 173
PspXI VCTCGAGB 1 cut(s) 36
PstI CTGCAG 1 cut(s) 248
PsuI RGATCY 2 cut(s) 757, 1002
PvuII CAGCTG 1 cut(s) 530
RsaI GTAC 2 cut(s) 287, 350
RsaNI GTAC 2 cut(s) 286, 349
RseI CAYNNNNRTG 1 cut(s) 737
SapI GCTCTTC 1 cut(s) 578
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 6 cut(s) 244, 253, 329, 376, 460, 839
Sau3AI GATC 4 cut(s) 51, 672, 757, 1002
Sau96I GGNCC 1 cut(s) 173
ScaI AGTACT 1 cut(s) 350
SchI GAGTC 1 cut(s) 891
ScrFI CCNGG 1 cut(s) 171
SfaNI GCATC 3 cut(s) 168, 239, 303
SfcI CTRYAG 1 cut(s) 244
Sfr274I CTCGAG 1 cut(s) 36
SinI GGWCC 1 cut(s) 173
SlaI CTCGAG 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 737
SmlI CTYRAG 3 cut(s) 20, 36, 536
SmoI CTYRAG 3 cut(s) 20, 36, 536
Sse9I AATT 4 cut(s) 29, 589, 827, 950
SseBI AGGCCT 1 cut(s) 896
SsiI CCGC 6 cut(s) 236, 255, 329, 448, 631, 965
SspMI CTAG 1 cut(s) 261
StuI AGGCCT 1 cut(s) 896
StyD4I CCNGG 1 cut(s) 169
TaaI ACNGT 3 cut(s) 113, 959, 990
TaiI ACGT 2 cut(s) 219, 944
TaqI TCGA 8 cut(s) 37, 138, 297, 503, 515, 765, 782, 816
TasI AATT 4 cut(s) 29, 589, 827, 950
TatI WGTACW 2 cut(s) 285, 348
TauI GCSGC 1 cut(s) 331
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 2 cut(s) 744, 851
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 5 cut(s) 243, 252, 375, 459, 838
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 3 cut(s) 140, 420, 489
TspGWI ACGGA 1 cut(s) 193
TspRI CASTG 2 cut(s) 744, 851
VpaK11BI GGWCC 1 cut(s) 173
XapI RAATTY 2 cut(s) 29, 950
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
XhoI CTCGAG 1 cut(s) 36
XspI CTAG 1 cut(s) 261
ZrmI AGTACT 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.