Rh6AG412300

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0017382
Physical Location & Seq
Reverse (-)
60869308 .. 60870727
1420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG412300.1

Sequence Viewer

Length: 1002 bp
ATGGATAAACGCTTCAAGCTCAAGCTCAAATTCCCTCGAGTTATTCCTATGATCCACTTTTGCCGTCCTAAACACAACCCCAATAATTCGGTGGTCGTTCCAGCAATTTACCGTCTGTCCCCGATGAACCCGAAAGTCGAGGACATCGGCTACCCCAGCATCATCCTGCCGGGACCACCACCATCAACACCGGAGAACACTTCCGTCAAGCGCCATGTCTATTCCGGCACCACGGCGGTCGGCTGCGGATGCAACGGGTCTAGGTCATGGACACGAGACCTCTTGTACTCCAGCATCGAATCACCAGAGTATGAAGTTAATGCAACGCCGCATTTGATGACTGAAAAGTACTACAACGATAAGAAGAACAAGAGCAGCAATGAGAAGAGGAGGAAGAAACCGAAAGCGAAAGCCAGTCTTCCTTCATCGGAAAGCAGTAAACGCTGGTTTAGCAGCGAAGAGGAGAATGAAGAGAGCGAAACCCCAATCTATTCTTCGAGAAGCTTCTCGACAGACTTTTCAGCTGTGCTTGAGACTATAAGCGAGGTATCAGACAAACAAAGTAGCAAAACGAAGAAGAGCAATTACAAGGTTAGGAGACTGAACCGAGGCGTATCAAAGAACTGGAAAGAAGCAGAGAAATCATCAACTGGTGAGATAGGGAAGATCAAGTCGGTGTTCCAGCCGATGAGAGTGTGCAGGAGACAAGGGATGGTAAAGGAGAGCTTGGCAGTGGTGAAGAAGTCGGAGGATCCGTTCGAGGACTTCAAGAAGTCGATGATGGAGATGATAATGGAGAAGCAGATTTTCGAGGCAAGAGAATTAGAGGAGCTGCTACACTGCTTCCTGACCTTGAACTCGCGCCATTATCATGGTGTCATAGTTGAAGCCTTCTCGGAGATATGGAAGCTCGTGTTTTCAGACACACCCTCAACGTCAAGTGAGTTCTACTGTTTTGCAGAGAAGTCCCAAACAGACCAACTGTCGAAGTTGAAGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ovate

Protein Analysis

333

Amino Acids

38.24

Weight (kDa)

9.35

Isoelectric Point (pI)

55.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 249 - 303 2.7e-25 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017382)

Species Orthologous Gene IDs
malus_domestica MD08G1033900.v1.1 MD15G1030700.v1.1
prunus_persica Prupe.1G381100_v2.0.a1
pyrus_communis pycom15g02680
rosa_chinensis RchiOBHm_Chr6g0300811
rosa_laevigata RLG00000011299
rosa_multiflora Rmu_sc0008947.1_g000002
rosa_roxburghii Rroxscaffold_7G00167390
rosa_rugosa Rorug06G0299300
rosa_samantha Rh6AG412300 Rh6BG419500 Rh6CG427000 Rh6DG412300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 227
AccII CGCG 1 cut(s) 862
AciI CCGC 3 cut(s) 236, 246, 329
AclWI GGATC 3 cut(s) 46, 746, 759
AcsI RAATTY 1 cut(s) 29
AfaI GTAC 2 cut(s) 287, 350
AgsI TTSAA 5 cut(s) 16, 769, 856, 887, 994
AhdI GACNNNNNGTC 1 cut(s) 982
AjuI GAANNNNNNNTTGG 2 cut(s) 478, 510
AloI GAACNNNNNNTCC 2 cut(s) 740, 772
AluBI AGCT 7 cut(s) 19, 25, 504, 524, 726, 832, 910
AluI AGCT 7 cut(s) 19, 25, 504, 524, 726, 832, 910
Alw26I GTCTC 4 cut(s) 270, 527, 592, 697
AlwI GGATC 3 cut(s) 46, 746, 759
Ama87I CYCGRG 1 cut(s) 36
ApeKI GCWGC 4 cut(s) 243, 375, 453, 832
ApoI RAATTY 1 cut(s) 29
AspLEI GCGC 2 cut(s) 213, 864
AspS9I GGNCC 1 cut(s) 173
AsuC2I CCSGG 1 cut(s) 171
AsuHPI GGTGA 3 cut(s) 294, 665, 748
AvaI CYCGRG 1 cut(s) 36
AvaII GGWCC 1 cut(s) 173
BamHI GGATCC 1 cut(s) 751
BanI GGYRCC 1 cut(s) 227
BarI GAAGNNNNNNTAC 2 cut(s) 569, 601
BauI CACGAG 2 cut(s) 273, 911
BbsI GAAGAC 1 cut(s) 410
BbvI GCAGC 4 cut(s) 230, 387, 465, 819
BccI CCATC 3 cut(s) 190, 706, 775
BceAI ACGGC 2 cut(s) 48, 249
BcnI CCSGG 1 cut(s) 171
BcoDI GTCTC 4 cut(s) 270, 527, 592, 697
BfaI CTAG 1 cut(s) 261
BfoI RGCGCY 1 cut(s) 214
BglII AGATCT 1 cut(s) 996
BisI GCNGC 5 cut(s) 244, 329, 376, 454, 833
BlsI GCNGC 5 cut(s) 245, 330, 377, 455, 834
BmcAI AGTACT 1 cut(s) 350
Bme1390I CCNGG 1 cut(s) 171
Bme18I GGWCC 1 cut(s) 173
BmeRI GACNNNNNGTC 1 cut(s) 982
BmeT110I CYCGRG 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 3 cut(s) 174, 229, 753
BmrFI CCNGG 1 cut(s) 171
BmsI GCATC 3 cut(s) 168, 239, 303
BpiI GAAGAC 1 cut(s) 410
BpmI CTGGAG 1 cut(s) 274
BpuEI CTTGAG 2 cut(s) 5, 551
BpuMI CCSGG 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 270
BsaJI CCNNGG 2 cut(s) 231, 607
BsaWI WCCGGW 1 cut(s) 190
BsaXI ACNNNNNCTCC 2 cut(s) 740, 770
Bse1I ACTGG 3 cut(s) 414, 629, 655
Bse3DI GCAATG 1 cut(s) 385
BseDI CCNNGG 2 cut(s) 231, 607
BseGI GGATG 3 cut(s) 162, 254, 717
BseMI GCAATG 1 cut(s) 385
BseNI ACTGG 3 cut(s) 414, 629, 655
BseRI GAGGAG 3 cut(s) 403, 476, 842
BseXI GCAGC 4 cut(s) 230, 387, 465, 819
BseYI CCCAGC 1 cut(s) 155
BsgI GTGCAG 1 cut(s) 718
Bsh1236I CGCG 1 cut(s) 862
Bsh1285I CGRYCG 1 cut(s) 240
BshNI GGYRCC 1 cut(s) 227
BsiEI CGRYCG 1 cut(s) 240
BsiHKCI CYCGRG 1 cut(s) 36
BsiSI CCGG 3 cut(s) 170, 191, 225
BslFI GGGAC 3 cut(s) 103, 186, 952
BsmAI GTCTC 4 cut(s) 270, 527, 592, 697
BsmFI GGGAC 3 cut(s) 103, 186, 952
Bso31I GGTCTC 1 cut(s) 270
BsoBI CYCGRG 1 cut(s) 36
Bsp143I GATC 4 cut(s) 51, 666, 751, 996
BspACI CCGC 3 cut(s) 236, 246, 329
BspFNI CGCG 1 cut(s) 862
BspLI GGNNCC 3 cut(s) 174, 229, 753
BspPI GGATC 3 cut(s) 46, 746, 759
BspQI GCTCTTC 1 cut(s) 572
BspT107I GGYRCC 1 cut(s) 227
BspTNI GGTCTC 1 cut(s) 270
BsrDI GCAATG 1 cut(s) 385
BsrI ACTGG 3 cut(s) 414, 629, 655
BssECI CCNNGG 2 cut(s) 231, 607
BssMI GATC 4 cut(s) 51, 666, 751, 996
BssSI CACGAG 2 cut(s) 273, 911
Bst2BI CACGAG 2 cut(s) 273, 911
Bst4CI ACNGT 3 cut(s) 113, 953, 984
Bst6I CTCTTC 4 cut(s) 380, 453, 465, 572
BstDSI CCRYGG 1 cut(s) 231
BstF5I GGATG 3 cut(s) 162, 254, 717
BstFNI CGCG 1 cut(s) 862
BstH2I RGCGCY 1 cut(s) 214
BstHHI GCGC 2 cut(s) 213, 864
BstKTI GATC 4 cut(s) 54, 669, 754, 999
BstMAI GTCTC 4 cut(s) 270, 527, 592, 697
BstMBI GATC 4 cut(s) 51, 666, 751, 996
BstMCI CGRYCG 1 cut(s) 240
BstMWI GCNNNNNNNGC 4 cut(s) 156, 249, 441, 450
BstSCI CCNGG 1 cut(s) 169
BstUI CGCG 1 cut(s) 862
BstV1I GCAGC 4 cut(s) 230, 387, 465, 819
BstV2I GAAGAC 1 cut(s) 410
BstX2I RGATCY 2 cut(s) 751, 996
BstXI CCANNNNNNTGG 1 cut(s) 872
BstYI RGATCY 2 cut(s) 751, 996
BtgI CCRYGG 1 cut(s) 231
BtsCI GGATG 3 cut(s) 162, 254, 717
BtsI GCAGTG 2 cut(s) 738, 838
BtsIMutI CAGTG 2 cut(s) 738, 838
CfoI GCGC 2 cut(s) 213, 864
Cfr13I GGNCC 1 cut(s) 173
Csp6I GTAC 2 cut(s) 286, 349
CviAII CATG 3 cut(s) 215, 267, 872
CviQI GTAC 2 cut(s) 286, 349
DpnI GATC 4 cut(s) 53, 668, 753, 998
DpnII GATC 4 cut(s) 51, 666, 751, 996
DriI GACNNNNNGTC 1 cut(s) 982
Eam1104I CTCTTC 4 cut(s) 380, 453, 465, 572
Eam1105I GACNNNNNGTC 1 cut(s) 982
EarI CTCTTC 4 cut(s) 380, 453, 465, 572
Eco31I GGTCTC 1 cut(s) 270
Eco47I GGWCC 1 cut(s) 173
Eco88I CYCGRG 1 cut(s) 36
FaeI CATG 3 cut(s) 218, 270, 875
FaiI YATR 8 cut(s) 50, 216, 268, 312, 539, 873, 881, 904
FalI AAGNNNNNCTT 4 cut(s) 402, 434, 710, 742
FaqI GGGAC 3 cut(s) 103, 186, 952
FatI CATG 3 cut(s) 214, 266, 871
Fnu4HI GCNGC 5 cut(s) 244, 329, 376, 454, 833
FokI GGATG 3 cut(s) 149, 261, 724
Fsp4HI GCNGC 5 cut(s) 244, 329, 376, 454, 833
FspBI CTAG 1 cut(s) 261
GlaI GCGC 2 cut(s) 212, 863
GluI GCNGC 5 cut(s) 244, 329, 376, 454, 833
GsaI CCCAGC 1 cut(s) 159
GsuI CTGGAG 1 cut(s) 274
HaeII RGCGCY 1 cut(s) 214
HapII CCGG 3 cut(s) 170, 191, 225
HhaI GCGC 2 cut(s) 213, 864
Hin1II CATG 3 cut(s) 218, 270, 875
Hin6I GCGC 2 cut(s) 211, 862
HinP1I GCGC 2 cut(s) 211, 862
HindIII AAGCTT 1 cut(s) 502
HinfI GANTC 1 cut(s) 299
HpaII CCGG 3 cut(s) 170, 191, 225
HphI GGTGA 3 cut(s) 294, 665, 748
Hpy166II GTNNAC 1 cut(s) 440
Hpy188I TCNGA 6 cut(s) 430, 553, 748, 898, 922, 1001
Hpy188III TCNNGA 4 cut(s) 498, 508, 769, 847
Hpy8I GTNNAC 1 cut(s) 440
HpyAV CCTTC 2 cut(s) 432, 901
HpyCH4III ACNGT 3 cut(s) 113, 953, 984
HpyCH4IV ACGT 1 cut(s) 935
HpyCH4V TGCA 4 cut(s) 252, 323, 699, 959
HpyF10VI GCNNNNNNNGC 4 cut(s) 156, 249, 441, 450
HpySE526I ACGT 1 cut(s) 935
Hsp92II CATG 3 cut(s) 218, 270, 875
HspAI GCGC 2 cut(s) 211, 862
Kzo9I GATC 4 cut(s) 51, 666, 751, 996
LguI GCTCTTC 1 cut(s) 572
LmnI GCTCC 1 cut(s) 829
Lsp1109I GCAGC 4 cut(s) 230, 387, 465, 819
LweI GCATC 3 cut(s) 168, 239, 303
MaeI CTAG 1 cut(s) 261
MaeII ACGT 1 cut(s) 935
MalI GATC 4 cut(s) 53, 668, 753, 998
MboI GATC 4 cut(s) 51, 666, 751, 996
MflI RGATCY 2 cut(s) 751, 996
MluCI AATT 5 cut(s) 29, 85, 105, 583, 821
MmeI TCCRAC 1 cut(s) 726
MseI TTAA 1 cut(s) 318
MslI CAYNNNNRTG 1 cut(s) 870
MspA1I CMGCKG 1 cut(s) 524
MspI CCGG 3 cut(s) 170, 191, 225
MspR9I CCNGG 1 cut(s) 171
MvnI CGCG 1 cut(s) 862
MwoI GCNNNNNNNGC 4 cut(s) 156, 249, 441, 450
NciI CCSGG 1 cut(s) 171
NdeII GATC 4 cut(s) 51, 666, 751, 996
NlaIII CATG 3 cut(s) 218, 270, 875
NlaIV GGNNCC 3 cut(s) 174, 229, 753
PaeR7I CTCGAG 1 cut(s) 36
PciSI GCTCTTC 1 cut(s) 572
PcsI WCGNNNNNNNCGW 1 cut(s) 752
PfeI GAWTC 1 cut(s) 299
PkrI GCNGC 5 cut(s) 245, 330, 377, 455, 834
PspFI CCCAGC 1 cut(s) 155
PspN4I GGNNCC 3 cut(s) 174, 229, 753
PspPI GGNCC 1 cut(s) 173
PspXI VCTCGAGB 1 cut(s) 36
PsuI RGATCY 2 cut(s) 751, 996
PvuII CAGCTG 1 cut(s) 524
RsaI GTAC 2 cut(s) 287, 350
RsaNI GTAC 2 cut(s) 286, 349
RseI CAYNNNNRTG 1 cut(s) 870
SapI GCTCTTC 1 cut(s) 572
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 5 cut(s) 244, 329, 376, 454, 833
Sau3AI GATC 4 cut(s) 51, 666, 751, 996
Sau96I GGNCC 1 cut(s) 173
ScaI AGTACT 1 cut(s) 350
ScrFI CCNGG 1 cut(s) 171
SfaNI GCATC 3 cut(s) 168, 239, 303
Sfr274I CTCGAG 1 cut(s) 36
SinI GGWCC 1 cut(s) 173
SlaI CTCGAG 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 870
SmlI CTYRAG 3 cut(s) 20, 36, 530
SmoI CTYRAG 3 cut(s) 20, 36, 530
Sse9I AATT 5 cut(s) 29, 85, 105, 583, 821
SsiI CCGC 3 cut(s) 236, 246, 329
SspMI CTAG 1 cut(s) 261
StyD4I CCNGG 1 cut(s) 169
TaaI ACNGT 3 cut(s) 113, 953, 984
TaiI ACGT 1 cut(s) 938
TaqI TCGA 9 cut(s) 37, 138, 297, 497, 509, 759, 776, 810, 986
TasI AATT 5 cut(s) 29, 85, 105, 583, 821
TatI WGTACW 2 cut(s) 285, 348
TauI GCSGC 1 cut(s) 331
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 2 cut(s) 738, 845
TseI GCWGC 4 cut(s) 243, 375, 453, 832
TspDTI ATGAA 4 cut(s) 140, 327, 414, 483
TspGWI ACGGA 2 cut(s) 193, 744
TspRI CASTG 2 cut(s) 738, 845
VpaK11BI GGWCC 1 cut(s) 173
XapI RAATTY 1 cut(s) 29
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
XhoI CTCGAG 1 cut(s) 36
XspI CTAG 1 cut(s) 261
ZrmI AGTACT 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.