Rh6CG427000

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0017382
Physical Location & Seq
Reverse (-)
60914028 .. 60915504
1477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG427000.1

Sequence Viewer

Length: 1005 bp
ATGGATAAACGCTTCAAGCTCAAGCTCAAATTCCCTCGAGTTATTCCTATGATCCACTTTTGCCGTCCTAAACACAACCCCAATAATTCGGTGGTCGTTCCAGCAATTTACCGTCTGTCCCCGATGAACCCGAAAGTCGAGGACATCGGCTACCCCAGCATCATCCTGCCGGGACCACCACCATCAACACCGGAGAACACTTCCGTCAAGCGCCATGTGTCTTCCGGCACCACGGCGGTCGGCTGCGGATGCAGCGGGTCTAGGTCATGGACACGAGACCTCTTGTACTCCAGCATCGAATCACCAGATCAGTATGAAGTTAATGCAACGCCGCATTTGATGACTGAAAAGTACTACAACGATAAGAAGAACAAGAGCAGCAATGAGAAGAGGAGGAAGAAACCGAAAGCGAAAGCCAGTCTTCCTTCATCGGAAAGCAGTAAACGCTGGTTTAGCAGCGAAGAGGAGAATGAAGAGAGCGAAACCCCAATCTATTCTTCGAGAAGCTTCTCGACAGACTTTTCAGCTGTGCTTGAGACTATAAGCGAGGTATCAGACAAACAAAGTAGCAAAACGAAGAAGAGCAATTACAAGGTTAGGAGACTGAACCGAGGCGTGTCAAAGAACTGGAAAGAAGCAGAGAAATCATCAACTGGTGAGATAGGGAAGATCAAGTCGGTGTTCCAGCCGATGAGAGTGTGCAGGAGACAAGGGATGGTAAAGGAGAGCTTGGCAGTGGTGAAGAAGTCGGAGGATCCGTTCGAGGACTTCAAGAAGTCGATGATGGAGATGATAATGGAGAAGCAGATTTTCGAGGCAAGAGAATTAGAGGAGCTGCTACACTGCTTCCTGACCTTGAACTCGCGCCATTATCAAGGTGTCATAGTTGAAGCCTTCTCGGAGATATGGAAGCTCGTGTTTTCAGACACACCCTCAACGTCAAGTGAGTTCTACTGTTTTGCAGAGAAGTCCCAAACAGACCAACTGTCGAAGTTGAAGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ovate

Protein Analysis

334

Amino Acids

38.25

Weight (kDa)

9.36

Isoelectric Point (pI)

55.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 250 - 304 5.9e-24 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017382)

Species Orthologous Gene IDs
malus_domestica MD08G1033900.v1.1 MD15G1030700.v1.1
prunus_persica Prupe.1G381100_v2.0.a1
pyrus_communis pycom15g02680
rosa_chinensis RchiOBHm_Chr6g0300811
rosa_laevigata RLG00000011299
rosa_multiflora Rmu_sc0008947.1_g000002
rosa_roxburghii Rroxscaffold_7G00167390
rosa_rugosa Rorug06G0299300
rosa_samantha Rh6AG412300 Rh6BG419500 Rh6CG427000 Rh6DG412300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 227
AccII CGCG 1 cut(s) 865
AciI CCGC 4 cut(s) 236, 246, 255, 332
AclWI GGATC 3 cut(s) 46, 749, 762
AcsI RAATTY 1 cut(s) 29
AfaI GTAC 2 cut(s) 287, 353
AgsI TTSAA 5 cut(s) 16, 772, 859, 890, 997
AhdI GACNNNNNGTC 1 cut(s) 985
AjuI GAANNNNNNNTTGG 2 cut(s) 481, 513
AloI GAACNNNNNNTCC 2 cut(s) 743, 775
AluBI AGCT 7 cut(s) 19, 25, 507, 527, 729, 835, 913
AluI AGCT 7 cut(s) 19, 25, 507, 527, 729, 835, 913
Alw26I GTCTC 4 cut(s) 270, 530, 595, 700
AlwI GGATC 3 cut(s) 46, 749, 762
Ama87I CYCGRG 1 cut(s) 36
ApeKI GCWGC 5 cut(s) 243, 252, 378, 456, 835
ApoI RAATTY 1 cut(s) 29
AspLEI GCGC 2 cut(s) 213, 867
AspS9I GGNCC 1 cut(s) 173
AsuC2I CCSGG 1 cut(s) 171
AsuHPI GGTGA 3 cut(s) 294, 668, 751
AvaI CYCGRG 1 cut(s) 36
AvaII GGWCC 1 cut(s) 173
BamHI GGATCC 1 cut(s) 754
BanI GGYRCC 1 cut(s) 227
BarI GAAGNNNNNNTAC 2 cut(s) 572, 604
BauI CACGAG 2 cut(s) 273, 914
BbsI GAAGAC 2 cut(s) 213, 413
BbvI GCAGC 5 cut(s) 230, 264, 390, 468, 822
BccI CCATC 3 cut(s) 190, 709, 778
BceAI ACGGC 2 cut(s) 48, 249
BcnI CCSGG 1 cut(s) 171
BcoDI GTCTC 4 cut(s) 270, 530, 595, 700
BfaI CTAG 1 cut(s) 261
BfoI RGCGCY 1 cut(s) 214
BglII AGATCT 1 cut(s) 999
BisI GCNGC 6 cut(s) 244, 253, 332, 379, 457, 836
BlsI GCNGC 6 cut(s) 245, 254, 333, 380, 458, 837
BmcAI AGTACT 1 cut(s) 353
Bme1390I CCNGG 1 cut(s) 171
Bme18I GGWCC 1 cut(s) 173
BmeRI GACNNNNNGTC 1 cut(s) 985
BmeT110I CYCGRG 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 3 cut(s) 174, 229, 756
BmrFI CCNGG 1 cut(s) 171
BmsI GCATC 3 cut(s) 168, 239, 303
BpiI GAAGAC 2 cut(s) 213, 413
BpmI CTGGAG 1 cut(s) 274
BpuEI CTTGAG 2 cut(s) 5, 554
BpuMI CCSGG 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 270
BsaJI CCNNGG 2 cut(s) 231, 610
BsaWI WCCGGW 1 cut(s) 190
BsaXI ACNNNNNCTCC 2 cut(s) 743, 773
Bse1I ACTGG 3 cut(s) 417, 632, 658
Bse3DI GCAATG 1 cut(s) 388
BseDI CCNNGG 2 cut(s) 231, 610
BseGI GGATG 3 cut(s) 162, 254, 720
BseMI GCAATG 1 cut(s) 388
BseNI ACTGG 3 cut(s) 417, 632, 658
BseRI GAGGAG 3 cut(s) 406, 479, 845
BseXI GCAGC 5 cut(s) 230, 264, 390, 468, 822
BseYI CCCAGC 1 cut(s) 155
BsgI GTGCAG 1 cut(s) 721
Bsh1236I CGCG 1 cut(s) 865
Bsh1285I CGRYCG 1 cut(s) 240
BshNI GGYRCC 1 cut(s) 227
BsiEI CGRYCG 1 cut(s) 240
BsiHKCI CYCGRG 1 cut(s) 36
BsiSI CCGG 3 cut(s) 170, 191, 225
BslFI GGGAC 3 cut(s) 103, 186, 955
BsmAI GTCTC 4 cut(s) 270, 530, 595, 700
BsmFI GGGAC 3 cut(s) 103, 186, 955
Bso31I GGTCTC 1 cut(s) 270
BsoBI CYCGRG 1 cut(s) 36
Bsp143I GATC 5 cut(s) 51, 307, 669, 754, 999
BspACI CCGC 4 cut(s) 236, 246, 255, 332
BspFNI CGCG 1 cut(s) 865
BspLI GGNNCC 3 cut(s) 174, 229, 756
BspPI GGATC 3 cut(s) 46, 749, 762
BspQI GCTCTTC 1 cut(s) 575
BspT107I GGYRCC 1 cut(s) 227
BspTNI GGTCTC 1 cut(s) 270
BsrDI GCAATG 1 cut(s) 388
BsrI ACTGG 3 cut(s) 417, 632, 658
BssECI CCNNGG 2 cut(s) 231, 610
BssMI GATC 5 cut(s) 51, 307, 669, 754, 999
BssSI CACGAG 2 cut(s) 273, 914
Bst2BI CACGAG 2 cut(s) 273, 914
Bst4CI ACNGT 3 cut(s) 113, 956, 987
Bst6I CTCTTC 4 cut(s) 383, 456, 468, 575
BstDSI CCRYGG 1 cut(s) 231
BstF5I GGATG 3 cut(s) 162, 254, 720
BstFNI CGCG 1 cut(s) 865
BstH2I RGCGCY 1 cut(s) 214
BstHHI GCGC 2 cut(s) 213, 867
BstKTI GATC 5 cut(s) 54, 310, 672, 757, 1002
BstMAI GTCTC 4 cut(s) 270, 530, 595, 700
BstMBI GATC 5 cut(s) 51, 307, 669, 754, 999
BstMCI CGRYCG 1 cut(s) 240
BstMWI GCNNNNNNNGC 5 cut(s) 156, 249, 252, 444, 453
BstSCI CCNGG 1 cut(s) 169
BstUI CGCG 1 cut(s) 865
BstV1I GCAGC 5 cut(s) 230, 264, 390, 468, 822
BstV2I GAAGAC 2 cut(s) 213, 413
BstX2I RGATCY 2 cut(s) 754, 999
BstYI RGATCY 2 cut(s) 754, 999
BtgI CCRYGG 1 cut(s) 231
BtsCI GGATG 3 cut(s) 162, 254, 720
BtsI GCAGTG 2 cut(s) 741, 841
BtsIMutI CAGTG 2 cut(s) 741, 841
CfoI GCGC 2 cut(s) 213, 867
Cfr13I GGNCC 1 cut(s) 173
Csp6I GTAC 2 cut(s) 286, 352
CviAII CATG 2 cut(s) 215, 267
CviQI GTAC 2 cut(s) 286, 352
DpnI GATC 5 cut(s) 53, 309, 671, 756, 1001
DpnII GATC 5 cut(s) 51, 307, 669, 754, 999
DriI GACNNNNNGTC 1 cut(s) 985
Eam1104I CTCTTC 4 cut(s) 383, 456, 468, 575
Eam1105I GACNNNNNGTC 1 cut(s) 985
EarI CTCTTC 4 cut(s) 383, 456, 468, 575
Eco31I GGTCTC 1 cut(s) 270
Eco47I GGWCC 1 cut(s) 173
Eco88I CYCGRG 1 cut(s) 36
FaeI CATG 2 cut(s) 218, 270
FaiI YATR 7 cut(s) 50, 216, 268, 315, 542, 884, 907
FalI AAGNNNNNCTT 4 cut(s) 405, 437, 713, 745
FaqI GGGAC 3 cut(s) 103, 186, 955
FatI CATG 2 cut(s) 214, 266
FauI CCCGC 1 cut(s) 248
Fnu4HI GCNGC 6 cut(s) 244, 253, 332, 379, 457, 836
FokI GGATG 3 cut(s) 149, 261, 727
Fsp4HI GCNGC 6 cut(s) 244, 253, 332, 379, 457, 836
FspBI CTAG 1 cut(s) 261
GlaI GCGC 2 cut(s) 212, 866
GluI GCNGC 6 cut(s) 244, 253, 332, 379, 457, 836
GsaI CCCAGC 1 cut(s) 159
GsuI CTGGAG 1 cut(s) 274
HaeII RGCGCY 1 cut(s) 214
HapII CCGG 3 cut(s) 170, 191, 225
HhaI GCGC 2 cut(s) 213, 867
Hin1II CATG 2 cut(s) 218, 270
Hin6I GCGC 2 cut(s) 211, 865
HinP1I GCGC 2 cut(s) 211, 865
HindIII AAGCTT 1 cut(s) 505
HinfI GANTC 1 cut(s) 299
HpaII CCGG 3 cut(s) 170, 191, 225
HphI GGTGA 3 cut(s) 294, 668, 751
Hpy166II GTNNAC 1 cut(s) 443
Hpy188I TCNGA 6 cut(s) 433, 556, 751, 901, 925, 1004
Hpy188III TCNNGA 4 cut(s) 501, 511, 772, 850
Hpy8I GTNNAC 1 cut(s) 443
HpyAV CCTTC 2 cut(s) 435, 904
HpyCH4III ACNGT 3 cut(s) 113, 956, 987
HpyCH4IV ACGT 1 cut(s) 938
HpyCH4V TGCA 4 cut(s) 252, 326, 702, 962
HpyF10VI GCNNNNNNNGC 5 cut(s) 156, 249, 252, 444, 453
HpySE526I ACGT 1 cut(s) 938
Hsp92II CATG 2 cut(s) 218, 270
HspAI GCGC 2 cut(s) 211, 865
Kzo9I GATC 5 cut(s) 51, 307, 669, 754, 999
LguI GCTCTTC 1 cut(s) 575
LmnI GCTCC 1 cut(s) 832
Lsp1109I GCAGC 5 cut(s) 230, 264, 390, 468, 822
LweI GCATC 3 cut(s) 168, 239, 303
MaeI CTAG 1 cut(s) 261
MaeII ACGT 1 cut(s) 938
MalI GATC 5 cut(s) 53, 309, 671, 756, 1001
MboI GATC 5 cut(s) 51, 307, 669, 754, 999
MflI RGATCY 2 cut(s) 754, 999
MluCI AATT 5 cut(s) 29, 85, 105, 586, 824
MmeI TCCRAC 1 cut(s) 729
MseI TTAA 1 cut(s) 321
MspA1I CMGCKG 2 cut(s) 255, 527
MspI CCGG 3 cut(s) 170, 191, 225
MspR9I CCNGG 1 cut(s) 171
MvnI CGCG 1 cut(s) 865
MwoI GCNNNNNNNGC 5 cut(s) 156, 249, 252, 444, 453
NciI CCSGG 1 cut(s) 171
NdeII GATC 5 cut(s) 51, 307, 669, 754, 999
NlaIII CATG 2 cut(s) 218, 270
NlaIV GGNNCC 3 cut(s) 174, 229, 756
PaeR7I CTCGAG 1 cut(s) 36
PciSI GCTCTTC 1 cut(s) 575
PcsI WCGNNNNNNNCGW 1 cut(s) 755
PfeI GAWTC 1 cut(s) 299
PkrI GCNGC 6 cut(s) 245, 254, 333, 380, 458, 837
PspFI CCCAGC 1 cut(s) 155
PspN4I GGNNCC 3 cut(s) 174, 229, 756
PspPI GGNCC 1 cut(s) 173
PspXI VCTCGAGB 1 cut(s) 36
PsuI RGATCY 2 cut(s) 754, 999
PvuII CAGCTG 1 cut(s) 527
RsaI GTAC 2 cut(s) 287, 353
RsaNI GTAC 2 cut(s) 286, 352
SapI GCTCTTC 1 cut(s) 575
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 6 cut(s) 244, 253, 332, 379, 457, 836
Sau3AI GATC 5 cut(s) 51, 307, 669, 754, 999
Sau96I GGNCC 1 cut(s) 173
ScaI AGTACT 1 cut(s) 353
ScrFI CCNGG 1 cut(s) 171
SfaNI GCATC 3 cut(s) 168, 239, 303
Sfr274I CTCGAG 1 cut(s) 36
SinI GGWCC 1 cut(s) 173
SlaI CTCGAG 1 cut(s) 36
SmlI CTYRAG 3 cut(s) 20, 36, 533
SmoI CTYRAG 3 cut(s) 20, 36, 533
Sse9I AATT 5 cut(s) 29, 85, 105, 586, 824
SsiI CCGC 4 cut(s) 236, 246, 255, 332
SspMI CTAG 1 cut(s) 261
StyD4I CCNGG 1 cut(s) 169
TaaI ACNGT 3 cut(s) 113, 956, 987
TaiI ACGT 1 cut(s) 941
TaqI TCGA 9 cut(s) 37, 138, 297, 500, 512, 762, 779, 813, 989
TasI AATT 5 cut(s) 29, 85, 105, 586, 824
TatI WGTACW 2 cut(s) 285, 351
TauI GCSGC 1 cut(s) 334
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 2 cut(s) 741, 848
TseI GCWGC 5 cut(s) 243, 252, 378, 456, 835
TspDTI ATGAA 4 cut(s) 140, 330, 417, 486
TspGWI ACGGA 2 cut(s) 193, 747
TspRI CASTG 2 cut(s) 741, 848
VpaK11BI GGWCC 1 cut(s) 173
XapI RAATTY 1 cut(s) 29
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
XhoI CTCGAG 1 cut(s) 36
XspI CTAG 1 cut(s) 261
ZrmI AGTACT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.