Rh6DG412300

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0017382
Physical Location & Seq
Reverse (-)
59808172 .. 59809648
1477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG412300.1

Sequence Viewer

Length: 1305 bp
ATGCTGAGGCTGCTATGGAATTTCATTCGACCATCCAATAATTTGATTATTACAAACAAACCATATACTACACCCATCTTCGAACCTAACAACCGCTACGGAATTCCACGTAGCTTTCAGCACTTGCATTTAGTATTATGTTCATATATGATATATATTCATACAGGTCTCTGTTTATGGCCGGCCTCAGTCGTAATAAATATCGAACCCCAAATCATCCTTCGAGCATCCCCAACTCTGCAAGCTACCTTCAACCTCAAAACCCTCCGAGGCTTAGACTTGGCCATCTCAATTCCACTTAAGATGGATAAACGATTCAAGCTCAAGCTCAAATTCCCTCGAGTTATTCCTATGATCCACTTTTGCCGTCCTAAACACAACCCCAATAATCCGGCGGTAGTTCCAGCAATTTACCGTCTGTCCCCGATGAACCCGAAAGTCGAGGACATCGGCTACCCCAGCATCATCCTGCCGGGACCACCACCATCAACACCGGAGAACACTTCCGTCAAGCGCCACGTGTCTTCCGGCACCACGGCGGTCGGCTGCGGATGCAGCGGGTCTAGGTCATGGACACGAGACCTCTTGTACTCCAGCATCGAATCACCAGAGTATGAAGTTAATGCAACGCCGCATTTGATGACTGAAAAGTACTACAACGATAAGAAGAACAAGAGCAGCAATGAGAAGAGGAGGAAGAAACCGAAAGCGAAAGCCAGTCTTCCTTCATCGGAAAGCAGTAACCGCTGGTTTAGCAGCGAAGAGGAGAATGAAGAGAGCGAAATCCCAATCTATTCTTCGAGAAGCTTCTCGACAGACTTTTCAGCTGTGCTCGAGACTATAAGCGAGGTATCAGACAAACAAAGTAGCAAAACGAAGAAGAGCAATTATAAGGTTAGGAGACTGAACCGATGCGTGTCAAAGAACTGGAAAGAAGCAGAGAAATCATCAACTGGTGAGATAGGGAAGATCAAGTCGGTGTTCCAGCCGATGAGAGTGTGCAGGAGAAAAGGGATGGTAAAGGACAGCATGGCAGTGGTGAAGAAGTCGGAGGATCCGTTCGAGGACTTCAAGAGGTCGATGATGGAGATGATAATGGAGAAGCAGATTTTCGAGGCAAGAGAATTAGAGGAGCTGCTACACTGCTTCCTGACCTTGAACTCGCGCCATTATCAAGGAGTCATAGTTGAGGCCTTCTCGGAGATATGGAAGCTCGTGTTTTCAGACACACCCTCAACGTCAAGTGAGTTCTACTGTTTTGCGGATAAGTCCCAAACAGACCAACTGTCCAAGTTGAAGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ovate

Protein Analysis

434

Amino Acids

49.8

Weight (kDa)

9.48

Isoelectric Point (pI)

57.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 350 - 404 7.9e-24 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017382)

Species Orthologous Gene IDs
malus_domestica MD08G1033900.v1.1 MD15G1030700.v1.1
prunus_persica Prupe.1G381100_v2.0.a1
pyrus_communis pycom15g02680
rosa_chinensis RchiOBHm_Chr6g0300811
rosa_laevigata RLG00000011299
rosa_multiflora Rmu_sc0008947.1_g000002
rosa_roxburghii Rroxscaffold_7G00167390
rosa_rugosa Rorug06G0299300
rosa_samantha Rh6AG412300 Rh6BG419500 Rh6CG427000 Rh6DG412300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 891
AccB1I GGYRCC 1 cut(s) 530
AccII CGCG 1 cut(s) 1165
AciI CCGC 8 cut(s) 94, 395, 539, 549, 558, 632, 745, 1262
AclWI GGATC 3 cut(s) 349, 1049, 1062
AcoI YGGCCR 2 cut(s) 179, 282
AcsI RAATTY 3 cut(s) 19, 102, 332
AcvI CACGTG 1 cut(s) 520
AfaI GTAC 2 cut(s) 590, 653
AflII CTTAAG 1 cut(s) 299
AflIII ACRYGT 1 cut(s) 519
AgsI TTSAA 5 cut(s) 253, 319, 1072, 1159, 1297
AhdI GACNNNNNGTC 1 cut(s) 1285
AjuI GAANNNNNNNTTGG 4 cut(s) 204, 236, 781, 813
AloI GAACNNNNNNTCC 2 cut(s) 1043, 1075
AluBI AGCT 8 cut(s) 114, 245, 322, 328, 807, 827, 1135, 1213
AluI AGCT 8 cut(s) 114, 245, 322, 328, 807, 827, 1135, 1213
Alw21I GWGCWC 1 cut(s) 834
Alw26I GTCTC 4 cut(s) 173, 573, 830, 895
AlwI GGATC 3 cut(s) 349, 1049, 1062
Ama87I CYCGRG 2 cut(s) 339, 833
AoxI GGCC 4 cut(s) 179, 183, 282, 1191
ApeKI GCWGC 6 cut(s) 10, 546, 555, 678, 756, 1135
ApoI RAATTY 3 cut(s) 19, 102, 332
AspLEI GCGC 2 cut(s) 516, 1167
AspS9I GGNCC 1 cut(s) 476
AsuC2I CCSGG 1 cut(s) 474
AsuHPI GGTGA 3 cut(s) 597, 968, 1051
AsuII TTCGAA 1 cut(s) 81
AvaI CYCGRG 2 cut(s) 339, 833
AvaII GGWCC 1 cut(s) 476
BalI TGGCCA 1 cut(s) 284
BamHI GGATCC 1 cut(s) 1054
BanI GGYRCC 1 cut(s) 530
BauI CACGAG 2 cut(s) 576, 1214
BbrPI CACGTG 1 cut(s) 520
BbsI GAAGAC 2 cut(s) 516, 713
Bbv12I GWGCWC 1 cut(s) 834
BbvCI CCTCAGC 1 cut(s) 5
BbvI GCAGC 5 cut(s) 533, 567, 690, 768, 1122
BccI CCATC 7 cut(s) 40, 83, 293, 298, 493, 1009, 1078
BceAI ACGGC 2 cut(s) 351, 552
BcnI CCSGG 1 cut(s) 474
BcoDI GTCTC 4 cut(s) 173, 573, 830, 895
BfaI CTAG 1 cut(s) 564
BfoI RGCGCY 1 cut(s) 517
BfrI CTTAAG 1 cut(s) 299
BglII AGATCT 1 cut(s) 1299
BisI GCNGC 7 cut(s) 11, 547, 556, 632, 679, 757, 1136
BlsI GCNGC 7 cut(s) 12, 548, 557, 633, 680, 758, 1137
BmcAI AGTACT 1 cut(s) 653
Bme1390I CCNGG 1 cut(s) 474
Bme18I GGWCC 1 cut(s) 476
BmeRI GACNNNNNGTC 1 cut(s) 1285
BmeT110I CYCGRG 2 cut(s) 339, 833
BmgT120I GGNCC 1 cut(s) 476
BmiI GGNNCC 3 cut(s) 477, 532, 1056
BmrFI CCNGG 1 cut(s) 474
BmsI GCATC 5 cut(s) 236, 471, 542, 606, 902
BpiI GAAGAC 2 cut(s) 516, 713
BplI GAGNNNNNCTC 2 cut(s) 1181, 1213
BpmI CTGGAG 1 cut(s) 577
Bpu10I CCTNAGC 1 cut(s) 5
Bpu14I TTCGAA 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 308
BpuMI CCSGG 1 cut(s) 474
BsaAI YACGTR 2 cut(s) 110, 520
BsaI GGTCTC 2 cut(s) 173, 573
BsaJI CCNNGG 2 cut(s) 268, 534
BsaWI WCCGGW 1 cut(s) 493
BsaXI ACNNNNNCTCC 4 cut(s) 1043, 1073, 1170, 1200
Bse118I RCCGGY 1 cut(s) 181
Bse1I ACTGG 3 cut(s) 717, 932, 958
Bse3DI GCAATG 1 cut(s) 688
BseDI CCNNGG 2 cut(s) 268, 534
BseGI GGATG 6 cut(s) 32, 216, 227, 465, 557, 1020
BseMI GCAATG 1 cut(s) 688
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 3 cut(s) 717, 932, 958
BseRI GAGGAG 3 cut(s) 706, 779, 1145
BseXI GCAGC 5 cut(s) 533, 567, 690, 768, 1122
BseYI CCCAGC 1 cut(s) 458
BsgI GTGCAG 1 cut(s) 1021
Bsh1236I CGCG 1 cut(s) 1165
Bsh1285I CGRYCG 1 cut(s) 543
BshFI GGCC 4 cut(s) 181, 185, 284, 1193
BshNI GGYRCC 1 cut(s) 530
BsiEI CGRYCG 1 cut(s) 543
BsiHKAI GWGCWC 1 cut(s) 834
BsiHKCI CYCGRG 2 cut(s) 339, 833
BsiSI CCGG 5 cut(s) 182, 392, 473, 494, 528
BslFI GGGAC 3 cut(s) 406, 489, 1255
BsmAI GTCTC 4 cut(s) 173, 573, 830, 895
BsmFI GGGAC 3 cut(s) 406, 489, 1255
BsnI GGCC 4 cut(s) 181, 185, 284, 1193
Bso31I GGTCTC 2 cut(s) 173, 573
BsoBI CYCGRG 2 cut(s) 339, 833
Bsp119I TTCGAA 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 834
Bsp143I GATC 4 cut(s) 354, 969, 1054, 1299
BspACI CCGC 8 cut(s) 94, 395, 539, 549, 558, 632, 745, 1262
BspANI GGCC 4 cut(s) 181, 185, 284, 1193
BspCNI CTCAG 1 cut(s) 200
BspFNI CGCG 1 cut(s) 1165
BspLI GGNNCC 3 cut(s) 477, 532, 1056
BspPI GGATC 3 cut(s) 349, 1049, 1062
BspQI GCTCTTC 1 cut(s) 875
BspT104I TTCGAA 1 cut(s) 81
BspT107I GGYRCC 1 cut(s) 530
BspTI CTTAAG 1 cut(s) 299
BspTNI GGTCTC 2 cut(s) 173, 573
BsrDI GCAATG 1 cut(s) 688
BsrFI RCCGGY 1 cut(s) 181
BsrI ACTGG 3 cut(s) 717, 932, 958
BssAI RCCGGY 1 cut(s) 181
BssECI CCNNGG 2 cut(s) 268, 534
BssMI GATC 4 cut(s) 354, 969, 1054, 1299
BssSI CACGAG 2 cut(s) 576, 1214
Bst2BI CACGAG 2 cut(s) 576, 1214
Bst4CI ACNGT 3 cut(s) 416, 1256, 1287
Bst6I CTCTTC 4 cut(s) 683, 756, 768, 875
BstAFI CTTAAG 1 cut(s) 299
BstBAI YACGTR 2 cut(s) 110, 520
BstBI TTCGAA 1 cut(s) 81
BstC8I GCNNGC 2 cut(s) 183, 243
BstDEI CTNAG 3 cut(s) 5, 187, 274
BstDSI CCRYGG 1 cut(s) 534
BstF5I GGATG 6 cut(s) 32, 216, 227, 465, 557, 1020
BstFNI CGCG 1 cut(s) 1165
BstH2I RGCGCY 1 cut(s) 517
BstHHI GCGC 2 cut(s) 516, 1167
BstKTI GATC 4 cut(s) 357, 972, 1057, 1302
BstMAI GTCTC 4 cut(s) 173, 573, 830, 895
BstMBI GATC 4 cut(s) 354, 969, 1054, 1299
BstMCI CGRYCG 1 cut(s) 543
BstMWI GCNNNNNNNGC 6 cut(s) 10, 459, 552, 555, 744, 753
BstSCI CCNGG 1 cut(s) 472
BstUI CGCG 1 cut(s) 1165
BstV1I GCAGC 5 cut(s) 533, 567, 690, 768, 1122
BstV2I GAAGAC 2 cut(s) 516, 713
BstX2I RGATCY 2 cut(s) 1054, 1299
BstYI RGATCY 2 cut(s) 1054, 1299
BsuRI GGCC 4 cut(s) 181, 185, 284, 1193
BtgI CCRYGG 1 cut(s) 534
BtsCI GGATG 6 cut(s) 32, 216, 227, 465, 557, 1020
BtsI GCAGTG 2 cut(s) 1041, 1141
BtsIMutI CAGTG 2 cut(s) 1041, 1141
Cac8I GCNNGC 2 cut(s) 183, 243
CfoI GCGC 2 cut(s) 516, 1167
Cfr10I RCCGGY 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 476
Csp6I GTAC 2 cut(s) 589, 652
CviAII CATG 2 cut(s) 570, 1030
CviQI GTAC 2 cut(s) 589, 652
DdeI CTNAG 3 cut(s) 5, 187, 274
DpnI GATC 4 cut(s) 356, 971, 1056, 1301
DpnII GATC 4 cut(s) 354, 969, 1054, 1299
DriI GACNNNNNGTC 1 cut(s) 1285
EaeI YGGCCR 2 cut(s) 179, 282
Eam1104I CTCTTC 4 cut(s) 683, 756, 768, 875
Eam1105I GACNNNNNGTC 1 cut(s) 1285
EarI CTCTTC 4 cut(s) 683, 756, 768, 875
Eco147I AGGCCT 1 cut(s) 1193
Eco31I GGTCTC 2 cut(s) 173, 573
Eco47I GGWCC 1 cut(s) 476
Eco72I CACGTG 1 cut(s) 520
Eco88I CYCGRG 2 cut(s) 339, 833
EcoRI GAATTC 1 cut(s) 102
FaeI CATG 2 cut(s) 573, 1033
FalI AAGNNNNNCTT 2 cut(s) 705, 737
FaqI GGGAC 3 cut(s) 406, 489, 1255
FatI CATG 2 cut(s) 569, 1029
FauI CCCGC 1 cut(s) 551
Fnu4HI GCNGC 7 cut(s) 11, 547, 556, 632, 679, 757, 1136
FokI GGATG 6 cut(s) 19, 203, 214, 452, 564, 1027
FseI GGCCGGCC 1 cut(s) 185
Fsp4HI GCNGC 7 cut(s) 11, 547, 556, 632, 679, 757, 1136
FspBI CTAG 1 cut(s) 564
GlaI GCGC 2 cut(s) 515, 1166
GluI GCNGC 7 cut(s) 11, 547, 556, 632, 679, 757, 1136
GsaI CCCAGC 1 cut(s) 462
GsuI CTGGAG 1 cut(s) 577
HaeII RGCGCY 1 cut(s) 517
HaeIII GGCC 4 cut(s) 181, 185, 284, 1193
HapII CCGG 5 cut(s) 182, 392, 473, 494, 528
HhaI GCGC 2 cut(s) 516, 1167
Hin1II CATG 2 cut(s) 573, 1033
Hin6I GCGC 2 cut(s) 514, 1165
HinP1I GCGC 2 cut(s) 514, 1165
HindIII AAGCTT 1 cut(s) 805
HinfI GANTC 3 cut(s) 315, 602, 1179
HpaII CCGG 5 cut(s) 182, 392, 473, 494, 528
HphI GGTGA 3 cut(s) 597, 968, 1051
Hpy188I TCNGA 7 cut(s) 269, 733, 856, 1051, 1201, 1225, 1304
Hpy188III TCNNGA 5 cut(s) 801, 811, 835, 1072, 1150
HpyAV CCTTC 4 cut(s) 230, 259, 735, 1204
HpyCH4III ACNGT 3 cut(s) 416, 1256, 1287
HpyCH4IV ACGT 3 cut(s) 109, 519, 1238
HpyCH4V TGCA 5 cut(s) 127, 241, 555, 626, 1002
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 459, 552, 555, 744, 753
HpyF3I CTNAG 3 cut(s) 5, 187, 274
HpySE526I ACGT 3 cut(s) 109, 519, 1238
Hsp92II CATG 2 cut(s) 573, 1033
HspAI GCGC 2 cut(s) 514, 1165
KroI GCCGGC 1 cut(s) 181
KroNI GCCGGC 1 cut(s) 183
Kzo9I GATC 4 cut(s) 354, 969, 1054, 1299
LguI GCTCTTC 1 cut(s) 875
LmnI GCTCC 1 cut(s) 1132
Lsp1109I GCAGC 5 cut(s) 533, 567, 690, 768, 1122
LweI GCATC 5 cut(s) 236, 471, 542, 606, 902
MaeI CTAG 1 cut(s) 564
MaeII ACGT 3 cut(s) 109, 519, 1238
MaeIII GTNAC 1 cut(s) 740
MalI GATC 4 cut(s) 356, 971, 1056, 1301
MboI GATC 4 cut(s) 354, 969, 1054, 1299
MflI RGATCY 2 cut(s) 1054, 1299
MhlI GDGCHC 1 cut(s) 834
MlsI TGGCCA 1 cut(s) 284
MluCI AATT 8 cut(s) 19, 40, 102, 291, 332, 408, 886, 1124
MluNI TGGCCA 1 cut(s) 284
MlyI GAGTC 1 cut(s) 1188
MmeI TCCRAC 1 cut(s) 1029
Mox20I TGGCCA 1 cut(s) 284
MroNI GCCGGC 1 cut(s) 181
MscI TGGCCA 1 cut(s) 284
MseI TTAA 2 cut(s) 300, 621
MslI CAYNNNNRTG 1 cut(s) 1034
Msp20I TGGCCA 1 cut(s) 284
MspA1I CMGCKG 3 cut(s) 558, 747, 827
MspCI CTTAAG 1 cut(s) 299
MspI CCGG 5 cut(s) 182, 392, 473, 494, 528
MspR9I CCNGG 1 cut(s) 474
MvnI CGCG 1 cut(s) 1165
MwoI GCNNNNNNNGC 6 cut(s) 10, 459, 552, 555, 744, 753
NaeI GCCGGC 1 cut(s) 183
NciI CCSGG 1 cut(s) 474
NdeII GATC 4 cut(s) 354, 969, 1054, 1299
NgoMIV GCCGGC 1 cut(s) 181
NlaIII CATG 2 cut(s) 573, 1033
NlaIV GGNNCC 3 cut(s) 477, 532, 1056
NspV TTCGAA 1 cut(s) 81
PaeR7I CTCGAG 2 cut(s) 339, 833
PceI AGGCCT 1 cut(s) 1193
PciSI GCTCTTC 1 cut(s) 875
PcsI WCGNNNNNNNCGW 1 cut(s) 1055
PdiI GCCGGC 1 cut(s) 183
PfeI GAWTC 2 cut(s) 315, 602
PkrI GCNGC 7 cut(s) 12, 548, 557, 633, 680, 758, 1137
PleI GAGTC 1 cut(s) 1187
PmaCI CACGTG 1 cut(s) 520
PmlI CACGTG 1 cut(s) 520
PpsI GAGTC 1 cut(s) 1187
Ppu21I YACGTR 2 cut(s) 110, 520
PsiI TTATAA 1 cut(s) 891
PspCI CACGTG 1 cut(s) 520
PspFI CCCAGC 1 cut(s) 458
PspN4I GGNNCC 3 cut(s) 477, 532, 1056
PspPI GGNCC 1 cut(s) 476
PspXI VCTCGAGB 1 cut(s) 339
PsuI RGATCY 2 cut(s) 1054, 1299
PvuII CAGCTG 1 cut(s) 827
RigI GGCCGGCC 1 cut(s) 185
RsaI GTAC 2 cut(s) 590, 653
RsaNI GTAC 2 cut(s) 589, 652
RseI CAYNNNNRTG 1 cut(s) 1034
SapI GCTCTTC 1 cut(s) 875
SaqAI TTAA 2 cut(s) 300, 621
SatI GCNGC 7 cut(s) 11, 547, 556, 632, 679, 757, 1136
Sau3AI GATC 4 cut(s) 354, 969, 1054, 1299
Sau96I GGNCC 1 cut(s) 476
ScaI AGTACT 1 cut(s) 653
SchI GAGTC 1 cut(s) 1188
ScrFI CCNGG 1 cut(s) 474
SduI GDGCHC 1 cut(s) 834
SfaNI GCATC 5 cut(s) 236, 471, 542, 606, 902
Sfr274I CTCGAG 2 cut(s) 339, 833
SfuI TTCGAA 1 cut(s) 81
SinI GGWCC 1 cut(s) 476
SlaI CTCGAG 2 cut(s) 339, 833
SmiMI CAYNNNNRTG 1 cut(s) 1034
SmlI CTYRAG 4 cut(s) 299, 323, 339, 833
SmoI CTYRAG 4 cut(s) 299, 323, 339, 833
Sse9I AATT 8 cut(s) 19, 40, 102, 291, 332, 408, 886, 1124
SseBI AGGCCT 1 cut(s) 1193
SsiI CCGC 8 cut(s) 94, 395, 539, 549, 558, 632, 745, 1262
SspMI CTAG 1 cut(s) 564
StuI AGGCCT 1 cut(s) 1193
StyD4I CCNGG 1 cut(s) 472
TaaI ACNGT 3 cut(s) 416, 1256, 1287
TaiI ACGT 3 cut(s) 112, 522, 1241
TasI AATT 8 cut(s) 19, 40, 102, 291, 332, 408, 886, 1124
TatI WGTACW 2 cut(s) 588, 651
TauI GCSGC 1 cut(s) 634
TfiI GAWTC 2 cut(s) 315, 602
Tru1I TTAA 2 cut(s) 300, 621
Tru9I TTAA 2 cut(s) 300, 621
TscAI CASTG 2 cut(s) 1041, 1148
TseI GCWGC 6 cut(s) 10, 546, 555, 678, 756, 1135
TspDTI ATGAA 7 cut(s) 13, 132, 149, 443, 630, 717, 786
TspGWI ACGGA 3 cut(s) 114, 496, 1047
TspRI CASTG 2 cut(s) 1041, 1148
Vha464I CTTAAG 1 cut(s) 299
VpaK11BI GGWCC 1 cut(s) 476
XapI RAATTY 3 cut(s) 19, 102, 332
XhoI CTCGAG 2 cut(s) 339, 833
XspI CTAG 1 cut(s) 564
ZrmI AGTACT 1 cut(s) 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.