Rmu_sc0008947.1_g000002

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008947.1
OG0017382
Physical Location & Seq
Reverse (-)
10075 .. 11142
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008947.1_g000002.1.cds

Sequence Viewer

Length: 1068 bp
ctgcaagctgccttcaacctcaaaaccctccgaggcttagacttggcattctcaattccacttacgatggataaacgcttcaagctcaagctcaaattccctcgagttattcctatgatccacttttgccgtcctaaacacaaccccaataattcggtggtcgttccagcaatttaccgtctgtccccgatgaactcgaaagtcgaggacatcggctaccccagcatcatcctgccgggaccaccaccatcaacaccggagaacacttccgtcaagcgccatgtctattccggcaccacggcggtcggctgcggatgcagcgggtctaggtcatggacacgagacctcttgtactccagcatcgaatcaccagagtatgaagttaatgcaacgccgcatttgatgactgaaaagtactacaacgataagaagaacaagagcagcaatgagaagaggaggaagaaaccgaaagcgaaagccagtcttccttcatcggaaagcagtaaacgctggtttagcagcgaagaggagaatgaagagagcgaaaccccaatctattcttcgagaagcttctcgacagacttttcagctgtgcttgagactataagcgaggtatcagacaaacaaagtagcaaaacgaagaagagcaattacaaggttaggagactgaaccgaggcgtatcaaagaactggaaagaagcagagaaatcatcaactggtgagatagggaagatcaagtcggtgttccagccgatgagagtgtgcaggagacaagggatggtaaaggagagcttggcagtggtgaagaagtcggaggatccgttcgaggacttcaagaagtcgatgatggagatgataatggagaagcagattttcgaggcaagagaattagaggagctgctacactgcttcctgaccttgaactcgcgccattatcatggtgtcatagttgaagccttctcggagatatggaagctcgtgttttcagacacaccctcaacgtcaagtgagttctactgttttgcagagaagtcccaaacagaccaactgtcgaagttgaagatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ovate

Protein Analysis

355

Amino Acids

40.59

Weight (kDa)

9.39

Isoelectric Point (pI)

53.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017382)

Species Orthologous Gene IDs
malus_domestica MD08G1033900.v1.1 MD15G1030700.v1.1
prunus_persica Prupe.1G381100_v2.0.a1
pyrus_communis pycom15g02680
rosa_chinensis RchiOBHm_Chr6g0300811
rosa_laevigata RLG00000011299
rosa_multiflora Rmu_sc0008947.1_g000002
rosa_roxburghii Rroxscaffold_7G00167390
rosa_rugosa Rorug06G0299300
rosa_samantha Rh6AG412300 Rh6BG419500 Rh6CG427000 Rh6DG412300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 293
AccII CGCG 1 cut(s) 928
AciI CCGC 4 cut(s) 302, 312, 321, 395
AclWI GGATC 3 cut(s) 112, 812, 825
AcsI RAATTY 1 cut(s) 95
AfaI GTAC 2 cut(s) 353, 416
AgsI TTSAA 6 cut(s) 16, 82, 835, 922, 953, 1060
AhdI GACNNNNNGTC 1 cut(s) 1048
AjuI GAANNNNNNNTTGG 2 cut(s) 544, 576
AloI GAACNNNNNNTCC 2 cut(s) 806, 838
AluBI AGCT 8 cut(s) 8, 85, 91, 570, 590, 792, 898, 976
AluI AGCT 8 cut(s) 8, 85, 91, 570, 590, 792, 898, 976
Alw26I GTCTC 4 cut(s) 336, 593, 658, 763
AlwI GGATC 3 cut(s) 112, 812, 825
Ama87I CYCGRG 1 cut(s) 102
ApeKI GCWGC 6 cut(s) 8, 309, 318, 441, 519, 898
ApoI RAATTY 1 cut(s) 95
AspLEI GCGC 2 cut(s) 279, 930
AspS9I GGNCC 1 cut(s) 239
AsuC2I CCSGG 1 cut(s) 237
AsuHPI GGTGA 3 cut(s) 360, 731, 814
AvaI CYCGRG 1 cut(s) 102
AvaII GGWCC 1 cut(s) 239
BamHI GGATCC 1 cut(s) 817
BanI GGYRCC 1 cut(s) 293
BarI GAAGNNNNNNTAC 2 cut(s) 635, 667
BauI CACGAG 2 cut(s) 339, 977
BbsI GAAGAC 1 cut(s) 476
BbvI GCAGC 5 cut(s) 296, 330, 453, 531, 885
BccI CCATC 4 cut(s) 61, 256, 772, 841
BceAI ACGGC 2 cut(s) 114, 315
BcnI CCSGG 1 cut(s) 237
BcoDI GTCTC 4 cut(s) 336, 593, 658, 763
BfaI CTAG 1 cut(s) 327
BfoI RGCGCY 1 cut(s) 280
BglII AGATCT 1 cut(s) 1062
BisI GCNGC 7 cut(s) 9, 310, 319, 395, 442, 520, 899
BlsI GCNGC 7 cut(s) 10, 311, 320, 396, 443, 521, 900
BmcAI AGTACT 1 cut(s) 416
Bme1390I CCNGG 1 cut(s) 237
Bme18I GGWCC 1 cut(s) 239
BmeRI GACNNNNNGTC 1 cut(s) 1048
BmeT110I CYCGRG 1 cut(s) 102
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 3 cut(s) 240, 295, 819
BmrFI CCNGG 1 cut(s) 237
BmsI GCATC 3 cut(s) 234, 305, 369
BpiI GAAGAC 1 cut(s) 476
BpmI CTGGAG 1 cut(s) 340
BpuEI CTTGAG 2 cut(s) 71, 617
BpuMI CCSGG 1 cut(s) 237
BsaI GGTCTC 1 cut(s) 336
BsaJI CCNNGG 3 cut(s) 31, 297, 673
BsaWI WCCGGW 1 cut(s) 256
BsaXI ACNNNNNCTCC 2 cut(s) 806, 836
Bse1I ACTGG 3 cut(s) 480, 695, 721
Bse3DI GCAATG 1 cut(s) 451
BseDI CCNNGG 3 cut(s) 31, 297, 673
BseGI GGATG 3 cut(s) 228, 320, 783
BseMI GCAATG 1 cut(s) 451
BseNI ACTGG 3 cut(s) 480, 695, 721
BseRI GAGGAG 3 cut(s) 469, 542, 908
BseXI GCAGC 5 cut(s) 296, 330, 453, 531, 885
BseYI CCCAGC 1 cut(s) 221
BsgI GTGCAG 1 cut(s) 784
Bsh1236I CGCG 1 cut(s) 928
Bsh1285I CGRYCG 1 cut(s) 306
BshNI GGYRCC 1 cut(s) 293
BsiEI CGRYCG 1 cut(s) 306
BsiHKCI CYCGRG 1 cut(s) 102
BsiSI CCGG 3 cut(s) 236, 257, 291
BslFI GGGAC 3 cut(s) 169, 252, 1018
BsmAI GTCTC 4 cut(s) 336, 593, 658, 763
BsmFI GGGAC 3 cut(s) 169, 252, 1018
BsmI GAATGC 1 cut(s) 47
Bso31I GGTCTC 1 cut(s) 336
BsoBI CYCGRG 1 cut(s) 102
Bsp143I GATC 4 cut(s) 117, 732, 817, 1062
BspACI CCGC 4 cut(s) 302, 312, 321, 395
BspFNI CGCG 1 cut(s) 928
BspLI GGNNCC 3 cut(s) 240, 295, 819
BspPI GGATC 3 cut(s) 112, 812, 825
BspQI GCTCTTC 1 cut(s) 638
BspT107I GGYRCC 1 cut(s) 293
BspTNI GGTCTC 1 cut(s) 336
BsrDI GCAATG 1 cut(s) 451
BsrI ACTGG 3 cut(s) 480, 695, 721
BssECI CCNNGG 3 cut(s) 31, 297, 673
BssMI GATC 4 cut(s) 117, 732, 817, 1062
BssSI CACGAG 2 cut(s) 339, 977
Bst2BI CACGAG 2 cut(s) 339, 977
Bst4CI ACNGT 3 cut(s) 179, 1019, 1050
Bst6I CTCTTC 4 cut(s) 446, 519, 531, 638
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 37
BstDSI CCRYGG 1 cut(s) 297
BstF5I GGATG 3 cut(s) 228, 320, 783
BstFNI CGCG 1 cut(s) 928
BstH2I RGCGCY 1 cut(s) 280
BstHHI GCGC 2 cut(s) 279, 930
BstKTI GATC 4 cut(s) 120, 735, 820, 1065
BstMAI GTCTC 4 cut(s) 336, 593, 658, 763
BstMBI GATC 4 cut(s) 117, 732, 817, 1062
BstMCI CGRYCG 1 cut(s) 306
BstMWI GCNNNNNNNGC 5 cut(s) 222, 315, 318, 507, 516
BstSCI CCNGG 1 cut(s) 235
BstUI CGCG 1 cut(s) 928
BstV1I GCAGC 5 cut(s) 296, 330, 453, 531, 885
BstV2I GAAGAC 1 cut(s) 476
BstX2I RGATCY 2 cut(s) 817, 1062
BstXI CCANNNNNNTGG 1 cut(s) 938
BstYI RGATCY 2 cut(s) 817, 1062
BtgI CCRYGG 1 cut(s) 297
BtsCI GGATG 3 cut(s) 228, 320, 783
BtsI GCAGTG 2 cut(s) 804, 904
BtsIMutI CAGTG 2 cut(s) 804, 904
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 2 cut(s) 279, 930
Cfr13I GGNCC 1 cut(s) 239
Csp6I GTAC 2 cut(s) 352, 415
CviAII CATG 3 cut(s) 281, 333, 938
CviQI GTAC 2 cut(s) 352, 415
DdeI CTNAG 1 cut(s) 37
DpnI GATC 4 cut(s) 119, 734, 819, 1064
DpnII GATC 4 cut(s) 117, 732, 817, 1062
DriI GACNNNNNGTC 1 cut(s) 1048
Eam1104I CTCTTC 4 cut(s) 446, 519, 531, 638
Eam1105I GACNNNNNGTC 1 cut(s) 1048
EarI CTCTTC 4 cut(s) 446, 519, 531, 638
Eco31I GGTCTC 1 cut(s) 336
Eco47I GGWCC 1 cut(s) 239
Eco88I CYCGRG 1 cut(s) 102
FaeI CATG 3 cut(s) 284, 336, 941
FaiI YATR 8 cut(s) 116, 282, 334, 378, 605, 939, 947, 970
FalI AAGNNNNNCTT 4 cut(s) 468, 500, 776, 808
FaqI GGGAC 3 cut(s) 169, 252, 1018
FatI CATG 3 cut(s) 280, 332, 937
FauI CCCGC 1 cut(s) 314
Fnu4HI GCNGC 7 cut(s) 9, 310, 319, 395, 442, 520, 899
FokI GGATG 3 cut(s) 215, 327, 790
Fsp4HI GCNGC 7 cut(s) 9, 310, 319, 395, 442, 520, 899
FspBI CTAG 1 cut(s) 327
GlaI GCGC 2 cut(s) 278, 929
GluI GCNGC 7 cut(s) 9, 310, 319, 395, 442, 520, 899
GsaI CCCAGC 1 cut(s) 225
GsuI CTGGAG 1 cut(s) 340
HaeII RGCGCY 1 cut(s) 280
HapII CCGG 3 cut(s) 236, 257, 291
HhaI GCGC 2 cut(s) 279, 930
Hin1II CATG 3 cut(s) 284, 336, 941
Hin6I GCGC 2 cut(s) 277, 928
HinP1I GCGC 2 cut(s) 277, 928
HindIII AAGCTT 1 cut(s) 568
HinfI GANTC 1 cut(s) 365
HpaII CCGG 3 cut(s) 236, 257, 291
HphI GGTGA 3 cut(s) 360, 731, 814
Hpy166II GTNNAC 1 cut(s) 506
Hpy188I TCNGA 7 cut(s) 32, 496, 619, 814, 964, 988, 1067
Hpy188III TCNNGA 4 cut(s) 564, 574, 835, 913
Hpy8I GTNNAC 1 cut(s) 506
HpyAV CCTTC 3 cut(s) 22, 498, 967
HpyCH4III ACNGT 3 cut(s) 179, 1019, 1050
HpyCH4IV ACGT 1 cut(s) 1001
HpyCH4V TGCA 5 cut(s) 4, 318, 389, 765, 1025
HpyF10VI GCNNNNNNNGC 5 cut(s) 222, 315, 318, 507, 516
HpyF3I CTNAG 1 cut(s) 37
HpySE526I ACGT 1 cut(s) 1001
Hsp92II CATG 3 cut(s) 284, 336, 941
HspAI GCGC 2 cut(s) 277, 928
Kzo9I GATC 4 cut(s) 117, 732, 817, 1062
LguI GCTCTTC 1 cut(s) 638
LmnI GCTCC 1 cut(s) 895
Lsp1109I GCAGC 5 cut(s) 296, 330, 453, 531, 885
LweI GCATC 3 cut(s) 234, 305, 369
MaeI CTAG 1 cut(s) 327
MaeII ACGT 1 cut(s) 1001
MalI GATC 4 cut(s) 119, 734, 819, 1064
MboI GATC 4 cut(s) 117, 732, 817, 1062
MflI RGATCY 2 cut(s) 817, 1062
MluCI AATT 6 cut(s) 54, 95, 151, 171, 649, 887
MmeI TCCRAC 1 cut(s) 792
MseI TTAA 1 cut(s) 384
MslI CAYNNNNRTG 1 cut(s) 936
MspA1I CMGCKG 2 cut(s) 321, 590
MspI CCGG 3 cut(s) 236, 257, 291
MspR9I CCNGG 1 cut(s) 237
Mva1269I GAATGC 1 cut(s) 47
MvnI CGCG 1 cut(s) 928
MwoI GCNNNNNNNGC 5 cut(s) 222, 315, 318, 507, 516
NciI CCSGG 1 cut(s) 237
NdeII GATC 4 cut(s) 117, 732, 817, 1062
NlaIII CATG 3 cut(s) 284, 336, 941
NlaIV GGNNCC 3 cut(s) 240, 295, 819
PaeR7I CTCGAG 1 cut(s) 102
PciSI GCTCTTC 1 cut(s) 638
PcsI WCGNNNNNNNCGW 1 cut(s) 818
PctI GAATGC 1 cut(s) 47
PfeI GAWTC 1 cut(s) 365
PkrI GCNGC 7 cut(s) 10, 311, 320, 396, 443, 521, 900
PspFI CCCAGC 1 cut(s) 221
PspN4I GGNNCC 3 cut(s) 240, 295, 819
PspPI GGNCC 1 cut(s) 239
PspXI VCTCGAGB 1 cut(s) 102
PsuI RGATCY 2 cut(s) 817, 1062
PvuII CAGCTG 1 cut(s) 590
RsaI GTAC 2 cut(s) 353, 416
RsaNI GTAC 2 cut(s) 352, 415
RseI CAYNNNNRTG 1 cut(s) 936
SapI GCTCTTC 1 cut(s) 638
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 7 cut(s) 9, 310, 319, 395, 442, 520, 899
Sau3AI GATC 4 cut(s) 117, 732, 817, 1062
Sau96I GGNCC 1 cut(s) 239
ScaI AGTACT 1 cut(s) 416
ScrFI CCNGG 1 cut(s) 237
SfaNI GCATC 3 cut(s) 234, 305, 369
Sfr274I CTCGAG 1 cut(s) 102
SinI GGWCC 1 cut(s) 239
SlaI CTCGAG 1 cut(s) 102
SmiMI CAYNNNNRTG 1 cut(s) 936
SmlI CTYRAG 3 cut(s) 86, 102, 596
SmoI CTYRAG 3 cut(s) 86, 102, 596
Sse9I AATT 6 cut(s) 54, 95, 151, 171, 649, 887
SsiI CCGC 4 cut(s) 302, 312, 321, 395
SspMI CTAG 1 cut(s) 327
StyD4I CCNGG 1 cut(s) 235
TaaI ACNGT 3 cut(s) 179, 1019, 1050
TaiI ACGT 1 cut(s) 1004
TasI AATT 6 cut(s) 54, 95, 151, 171, 649, 887
TatI WGTACW 2 cut(s) 351, 414
TauI GCSGC 1 cut(s) 397
TfiI GAWTC 1 cut(s) 365
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TscAI CASTG 2 cut(s) 804, 911
TseI GCWGC 6 cut(s) 8, 309, 318, 441, 519, 898
TspDTI ATGAA 4 cut(s) 206, 393, 480, 549
TspGWI ACGGA 2 cut(s) 259, 810
TspRI CASTG 2 cut(s) 804, 911
VpaK11BI GGWCC 1 cut(s) 239
XapI RAATTY 1 cut(s) 95
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XhoI CTCGAG 1 cut(s) 102
XspI CTAG 1 cut(s) 327
ZrmI AGTACT 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.