Prupe.1G381100_v2.0.a1

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017382
Physical Location & Seq
Forward (+)
34339893 .. 34340903
1011 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G381100.1

Sequence Viewer

Length: 1011 bp
ATGGCTAAACACTACTTCAAGCTCAAATTCCCTCGGGTTATTCCTCTAATCCAATTCTGTCGTCCCAAACACCATGCCACTTTACCGGCAATTTACCGGCTGTCTCCCGTCAACTCCAAAGCCTTGGACATCGGCTACCCCAACCTCCTCCCCGCCCCACCACCGTCCACACCCGAACACCCCTCCATCAAGCGCCGAGAGTCAACCAAGCCGACGACCAAATCCTCCCGCATCGGCTGCGGATCATGCAGGTCCAGGTCATGCACGCGATATATCTCTGACTGCAACGTCGAGATCAAATCATCTGCAGATTACGAGCGCAACAACAATTATATGTCCCCGATTTCGGAGACTCAAAAGTACTACAAAAAGAAACGCAAGGAGAATAAGAAGAGAGCCAAAGCAAAAGCCGAGCTTCCTTTTATGACTACTTCTTCGGGAAACTACGGTAACTGGTTCAGCGGCGAATTCGAAGGAGACGAAGAAAACAACGAAGAAAGCGAAACCCCAGTTTACTCTTCCAGAAGCTTCTCGAACGAATTCTCACTAGTGTTAGAGAGTATAGCAGAGAAAATGTCAGACAAACAGAACAGCCTGCAAAAGAAGAAGAACAAGAAAACTAATAATGTTGATTATAATAACAGCAAAACAAAGAAGGTTCGGAGACCCAATTCAGATTCGGATTTGAAGAAATTGACTAGTGGTGAGATTGGGAGGATAAAGACGGTGTTGCGGCCGATGAGGGCGTGCAGGGGAAAAGCAGGGAAGGTGAGAGAGAGCATGGCGGTGGTGAAGAAGTCGGAGGATCCGTACGAGGACTTTAAGAGGTCGATGATGGAGATGATCATGGAGAAGCAGATTTTCGAGGCTAAAGAGTTGGAGGAACTTCTTCACTGTTTCTTGACTTTGAACTCCCGCCACTATCAGGGGGTTATTGTGGAGGCCTTTTCTGAGATTTGGGAGCTCTTGTTTTCTGATCCTTCAGACCAATTGGGAAAGTTGAAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ovate

Protein Analysis

337

Amino Acids

38.67

Weight (kDa)

9.53

Isoelectric Point (pI)

58.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017382)

Species Orthologous Gene IDs
malus_domestica MD08G1033900.v1.1 MD15G1030700.v1.1
prunus_persica Prupe.1G381100_v2.0.a1
pyrus_communis pycom15g02680
rosa_chinensis RchiOBHm_Chr6g0300811
rosa_laevigata RLG00000011299
rosa_multiflora Rmu_sc0008947.1_g000002
rosa_roxburghii Rroxscaffold_7G00167390
rosa_rugosa Rorug06G0299300
rosa_samantha Rh6AG412300 Rh6BG419500 Rh6CG427000 Rh6DG412300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 636
AasI GACNNNNNNGTC 1 cut(s) 287
Acc36I ACCTGC 1 cut(s) 240
AccII CGCG 1 cut(s) 268
AciI CCGC 7 cut(s) 153, 229, 240, 462, 733, 785, 916
AclWI GGATC 4 cut(s) 250, 800, 813, 971
AcoI YGGCCR 1 cut(s) 734
AcsI RAATTY 3 cut(s) 26, 467, 539
AcuI CTGAAG 1 cut(s) 966
AfaI GTAC 2 cut(s) 362, 812
AfiI CCNNNNNNNGG 2 cut(s) 346, 925
AgsI TTSAA 4 cut(s) 19, 688, 910, 1003
AhlI ACTAGT 2 cut(s) 547, 698
AjnI CCWGG 1 cut(s) 254
AluBI AGCT 4 cut(s) 22, 415, 528, 964
AluI AGCT 4 cut(s) 22, 415, 528, 964
Alw21I GWGCWC 1 cut(s) 966
Alw26I GTCTC 4 cut(s) 108, 344, 471, 658
AlwI GGATC 4 cut(s) 250, 800, 813, 971
Ama87I CYCGRG 1 cut(s) 33
AoxI GGCC 2 cut(s) 734, 942
ApeKI GCWGC 1 cut(s) 237
ApoI RAATTY 3 cut(s) 26, 467, 539
ArsI GACNNNNNNTTYG 2 cut(s) 418, 450
Asp700I GAANNNNTTC 2 cut(s) 539, 888
AspLEI GCGC 2 cut(s) 195, 321
AspS9I GGNCC 1 cut(s) 252
AsuHPI GGTGA 3 cut(s) 716, 781, 802
AsuII TTCGAA 1 cut(s) 471
AvaI CYCGRG 1 cut(s) 33
AvaII GGWCC 1 cut(s) 252
BamHI GGATCC 1 cut(s) 805
BanII GRGCYC 1 cut(s) 966
Bbv12I GWGCWC 1 cut(s) 966
BbvI GCAGC 1 cut(s) 224
BccI CCATC 2 cut(s) 194, 829
BciT130I CCWGG 1 cut(s) 256
BclI TGATCA 1 cut(s) 843
BcoDI GTCTC 4 cut(s) 108, 344, 471, 658
BcuI ACTAGT 2 cut(s) 547, 698
BfaI CTAG 2 cut(s) 548, 699
BfmI CTRYAG 1 cut(s) 306
BfoI RGCGCY 1 cut(s) 196
BfuAI ACCTGC 1 cut(s) 240
BisI GCNGC 3 cut(s) 238, 463, 734
BlsI GCNGC 3 cut(s) 239, 464, 735
BmcAI AGTACT 1 cut(s) 362
Bme1390I CCNGG 1 cut(s) 256
Bme18I GGWCC 1 cut(s) 252
BmeT110I CYCGRG 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 252
BmiI GGNNCC 1 cut(s) 807
BmrFI CCNGG 1 cut(s) 256
BmrI ACTGGG 1 cut(s) 503
BmsI GCATC 1 cut(s) 240
BmuI ACTGGG 1 cut(s) 503
Bpu14I TTCGAA 1 cut(s) 471
BsaI GGTCTC 1 cut(s) 658
BsaJI CCNNGG 2 cut(s) 32, 123
BsaXI ACNNNNNCTCC 4 cut(s) 794, 824, 953, 983
Bsc4I CCNNNNNNNGG 2 cut(s) 346, 925
Bse118I RCCGGY 2 cut(s) 85, 96
Bse1I ACTGG 2 cut(s) 458, 509
BseBI CCWGG 1 cut(s) 256
BseDI CCNNGG 2 cut(s) 32, 123
BseLI CCNNNNNNNGG 2 cut(s) 346, 925
BseMII CTCAG 1 cut(s) 942
BseNI ACTGG 2 cut(s) 458, 509
BseRI GAGGAG 1 cut(s) 137
BseX3I CGGCCG 1 cut(s) 734
BseXI GCAGC 1 cut(s) 224
BsgI GTGCAG 1 cut(s) 769
Bsh1236I CGCG 1 cut(s) 268
Bsh1285I CGRYCG 1 cut(s) 737
BshFI GGCC 2 cut(s) 736, 944
BsiEI CGRYCG 1 cut(s) 737
BsiHKAI GWGCWC 1 cut(s) 966
BsiHKCI CYCGRG 1 cut(s) 33
BsiSI CCGG 2 cut(s) 86, 97
BsiWI CGTACG 1 cut(s) 810
BslFI GGGAC 2 cut(s) 48, 322
BslI CCNNNNNNNGG 2 cut(s) 346, 925
BsmAI GTCTC 4 cut(s) 108, 344, 471, 658
BsmBI CGTCTC 1 cut(s) 471
BsmFI GGGAC 2 cut(s) 48, 322
BsnI GGCC 2 cut(s) 736, 944
Bso31I GGTCTC 1 cut(s) 658
BsoBI CYCGRG 1 cut(s) 33
Bsp119I TTCGAA 1 cut(s) 471
Bsp1286I GDGCHC 1 cut(s) 966
Bsp143I GATC 5 cut(s) 242, 294, 805, 843, 976
BspACI CCGC 7 cut(s) 153, 229, 240, 462, 733, 785, 916
BspANI GGCC 2 cut(s) 736, 944
BspCNI CTCAG 1 cut(s) 943
BspFNI CGCG 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 807
BspMAI CTGCAG 1 cut(s) 310
BspMI ACCTGC 1 cut(s) 240
BspPI GGATC 4 cut(s) 250, 800, 813, 971
BspT104I TTCGAA 1 cut(s) 471
BspTNI GGTCTC 1 cut(s) 658
BsrFI RCCGGY 2 cut(s) 85, 96
BsrI ACTGG 2 cut(s) 458, 509
BssAI RCCGGY 2 cut(s) 85, 96
BssECI CCNNGG 2 cut(s) 32, 123
BssMI GATC 5 cut(s) 242, 294, 805, 843, 976
BssT1I CCWWGG 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 256
Bst4CI ACNGT 4 cut(s) 165, 449, 727, 896
Bst6I CTCTTC 2 cut(s) 386, 523
BstAPI GCANNNNNTGC 1 cut(s) 237
BstBI TTCGAA 1 cut(s) 471
BstC8I GCNNGC 3 cut(s) 266, 596, 748
BstDEI CTNAG 1 cut(s) 951
BstFNI CGCG 1 cut(s) 268
BstH2I RGCGCY 1 cut(s) 196
BstHHI GCGC 2 cut(s) 195, 321
BstKTI GATC 5 cut(s) 245, 297, 808, 846, 979
BstMAI GTCTC 4 cut(s) 108, 344, 471, 658
BstMBI GATC 5 cut(s) 242, 294, 805, 843, 976
BstMCI CGRYCG 1 cut(s) 737
BstMWI GCNNNNNNNGC 2 cut(s) 237, 246
BstNI CCWGG 1 cut(s) 256
BstSCI CCNGG 1 cut(s) 254
BstSFI CTRYAG 1 cut(s) 306
BstUI CGCG 1 cut(s) 268
BstV1I GCAGC 1 cut(s) 224
BstX2I RGATCY 1 cut(s) 805
BstXI CCANNNNNNTGG 1 cut(s) 124
BstYI RGATCY 1 cut(s) 805
BstZI CGGCCG 1 cut(s) 734
BsuRI GGCC 2 cut(s) 736, 944
BtsIMutI CAGTG 1 cut(s) 892
BveI ACCTGC 1 cut(s) 240
Cac8I GCNNGC 3 cut(s) 266, 596, 748
CfoI GCGC 2 cut(s) 195, 321
Cfr10I RCCGGY 2 cut(s) 85, 96
Cfr13I GGNCC 1 cut(s) 252
Csp6I GTAC 2 cut(s) 361, 811
CviAII CATG 5 cut(s) 74, 246, 261, 781, 847
CviQI GTAC 2 cut(s) 361, 811
DdeI CTNAG 1 cut(s) 951
DpnI GATC 5 cut(s) 244, 296, 807, 845, 978
DpnII GATC 5 cut(s) 242, 294, 805, 843, 976
DrdI GACNNNNNNGTC 1 cut(s) 287
DseDI GACNNNNNNGTC 1 cut(s) 287
EaeI YGGCCR 1 cut(s) 734
EagI CGGCCG 1 cut(s) 734
Eam1104I CTCTTC 2 cut(s) 386, 523
EarI CTCTTC 2 cut(s) 386, 523
Ecl136II GAGCTC 1 cut(s) 964
EclXI CGGCCG 1 cut(s) 734
Eco130I CCWWGG 1 cut(s) 123
Eco147I AGGCCT 1 cut(s) 944
Eco24I GRGCYC 1 cut(s) 966
Eco31I GGTCTC 1 cut(s) 658
Eco47I GGWCC 1 cut(s) 252
Eco52I CGGCCG 1 cut(s) 734
Eco53kI GAGCTC 1 cut(s) 964
Eco57I CTGAAG 1 cut(s) 966
Eco88I CYCGRG 1 cut(s) 33
EcoICRI GAGCTC 1 cut(s) 964
EcoRI GAATTC 2 cut(s) 467, 539
EcoRII CCWGG 1 cut(s) 254
EcoT14I CCWWGG 1 cut(s) 123
EcoT38I GRGCYC 1 cut(s) 966
ErhI CCWWGG 1 cut(s) 123
Esp3I CGTCTC 1 cut(s) 471
FaeI CATG 5 cut(s) 77, 249, 264, 784, 850
FalI AAGNNNNNCTT 2 cut(s) 399, 431
FaqI GGGAC 2 cut(s) 48, 322
FatI CATG 5 cut(s) 73, 245, 260, 780, 846
FauI CCCGC 3 cut(s) 160, 236, 923
FbaI TGATCA 1 cut(s) 843
Fnu4HI GCNGC 3 cut(s) 238, 463, 734
FriOI GRGCYC 1 cut(s) 966
Fsp4HI GCNGC 3 cut(s) 238, 463, 734
FspBI CTAG 2 cut(s) 548, 699
GlaI GCGC 2 cut(s) 194, 320
GluI GCNGC 3 cut(s) 238, 463, 734
HaeII RGCGCY 1 cut(s) 196
HaeIII GGCC 2 cut(s) 736, 944
HapII CCGG 2 cut(s) 86, 97
HhaI GCGC 2 cut(s) 195, 321
Hin1II CATG 5 cut(s) 77, 249, 264, 784, 850
Hin6I GCGC 2 cut(s) 193, 319
HinP1I GCGC 2 cut(s) 193, 319
HincII GTYRAC 2 cut(s) 112, 204
HindII GTYRAC 2 cut(s) 112, 204
HindIII AAGCTT 1 cut(s) 526
HinfI GANTC 3 cut(s) 200, 352, 677
HpaII CCGG 2 cut(s) 86, 97
HphI GGTGA 3 cut(s) 716, 781, 802
Hpy166II GTNNAC 4 cut(s) 112, 168, 204, 514
Hpy188III TCNNGA 5 cut(s) 292, 438, 522, 532, 901
Hpy8I GTNNAC 4 cut(s) 112, 168, 204, 514
Hpy99I CGWCG 2 cut(s) 217, 293
HpyAV CCTTC 4 cut(s) 467, 649, 760, 990
HpyCH4III ACNGT 4 cut(s) 165, 449, 727, 896
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 6 cut(s) 249, 264, 285, 308, 598, 750
HpyF10VI GCNNNNNNNGC 2 cut(s) 237, 246
HpyF3I CTNAG 1 cut(s) 951
HpySE526I ACGT 1 cut(s) 288
Hsp92II CATG 5 cut(s) 77, 249, 264, 784, 850
HspAI GCGC 2 cut(s) 193, 319
Ksp22I TGATCA 1 cut(s) 843
Kzo9I GATC 5 cut(s) 242, 294, 805, 843, 976
LmnI GCTCC 1 cut(s) 961
Lsp1109I GCAGC 1 cut(s) 224
LweI GCATC 1 cut(s) 240
MaeI CTAG 2 cut(s) 548, 699
MaeII ACGT 1 cut(s) 288
MaeIII GTNAC 1 cut(s) 449
MalI GATC 5 cut(s) 244, 296, 807, 845, 978
MboI GATC 5 cut(s) 242, 294, 805, 843, 976
MfeI CAATTG 1 cut(s) 989
MflI RGATCY 1 cut(s) 805
MhlI GDGCHC 1 cut(s) 966
MluCI AATT 9 cut(s) 26, 53, 90, 328, 467, 539, 670, 692, 989
MlyI GAGTC 2 cut(s) 209, 346
MmeI TCCRAC 2 cut(s) 780, 858
MroXI GAANNNNTTC 2 cut(s) 539, 888
MseI TTAA 1 cut(s) 822
MslI CAYNNNNRTG 1 cut(s) 785
MspA1I CMGCKG 1 cut(s) 462
MspI CCGG 2 cut(s) 86, 97
MspR9I CCNGG 1 cut(s) 256
MunI CAATTG 1 cut(s) 989
MvaI CCWGG 1 cut(s) 256
MvnI CGCG 1 cut(s) 268
MwoI GCNNNNNNNGC 2 cut(s) 237, 246
NdeII GATC 5 cut(s) 242, 294, 805, 843, 976
NlaIII CATG 5 cut(s) 77, 249, 264, 784, 850
NlaIV GGNNCC 1 cut(s) 807
NmeAIII GCCGAG 2 cut(s) 221, 436
NspV TTCGAA 1 cut(s) 471
PceI AGGCCT 1 cut(s) 944
PcsI WCGNNNNNNNCGW 3 cut(s) 477, 498, 806
PdmI GAANNNNTTC 2 cut(s) 539, 888
PfeI GAWTC 1 cut(s) 677
Pfl23II CGTACG 1 cut(s) 810
PkrI GCNGC 3 cut(s) 239, 464, 735
PleI GAGTC 2 cut(s) 208, 346
PpsI GAGTC 2 cut(s) 208, 346
PsiI TTATAA 1 cut(s) 636
Psp124BI GAGCTC 1 cut(s) 966
Psp6I CCWGG 1 cut(s) 254
PspGI CCWGG 1 cut(s) 254
PspLI CGTACG 1 cut(s) 810
PspN4I GGNNCC 1 cut(s) 807
PspPI GGNCC 1 cut(s) 252
PstI CTGCAG 1 cut(s) 310
PsuI RGATCY 1 cut(s) 805
RsaI GTAC 2 cut(s) 362, 812
RsaNI GTAC 2 cut(s) 361, 811
RseI CAYNNNNRTG 1 cut(s) 785
SacI GAGCTC 1 cut(s) 966
SaqAI TTAA 1 cut(s) 822
SatI GCNGC 3 cut(s) 238, 463, 734
Sau3AI GATC 5 cut(s) 242, 294, 805, 843, 976
Sau96I GGNCC 1 cut(s) 252
ScaI AGTACT 1 cut(s) 362
SchI GAGTC 2 cut(s) 209, 346
ScrFI CCNGG 1 cut(s) 256
SduI GDGCHC 1 cut(s) 966
SfaNI GCATC 1 cut(s) 240
SfcI CTRYAG 1 cut(s) 306
SfuI TTCGAA 1 cut(s) 471
SinI GGWCC 1 cut(s) 252
SmiMI CAYNNNNRTG 1 cut(s) 785
SpeI ACTAGT 2 cut(s) 547, 698
Sse9I AATT 9 cut(s) 26, 53, 90, 328, 467, 539, 670, 692, 989
SseBI AGGCCT 1 cut(s) 944
SsiI CCGC 7 cut(s) 153, 229, 240, 462, 733, 785, 916
SspMI CTAG 2 cut(s) 548, 699
SstI GAGCTC 1 cut(s) 966
StuI AGGCCT 1 cut(s) 944
StyD4I CCNGG 1 cut(s) 254
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 4 cut(s) 165, 449, 727, 896
TaiI ACGT 1 cut(s) 291
TaqI TCGA 5 cut(s) 291, 471, 533, 830, 864
TasI AATT 9 cut(s) 26, 53, 90, 328, 467, 539, 670, 692, 989
TatI WGTACW 1 cut(s) 360
TauI GCSGC 2 cut(s) 465, 736
TfiI GAWTC 1 cut(s) 677
Tru1I TTAA 1 cut(s) 822
Tru9I TTAA 1 cut(s) 822
TscAI CASTG 1 cut(s) 899
TseI GCWGC 1 cut(s) 237
TspGWI ACGGA 1 cut(s) 798
TspRI CASTG 1 cut(s) 899
VpaK11BI GGWCC 1 cut(s) 252
XapI RAATTY 3 cut(s) 26, 467, 539
XmnI GAANNNNTTC 2 cut(s) 539, 888
XspI CTAG 2 cut(s) 548, 699
ZrmI AGTACT 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.