pycom15g02680

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0017382
Physical Location & Seq
Reverse (-)
1640403 .. 1641473
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g02680.1

Sequence Viewer

Length: 1071 bp
ATGGCTAAACGCTCCTTTAAGCTCAAATTCCCCCGGGTTATCCCGCTTATCCAATTCTGTCGCCCCAAACACAACTCCACTTTACCGGCAATTTACCGGCTGTCCCCCGTAAACGCCAAAGCCATGGACATCGGCTTCCCCAGCCTCACCCTCCCGGTCCCGCCACCGTCCGCACCGGAGCACCCCTCCGTAAAGTGCCACGTGTCATCCAAGCCCACCAAATCCCTCGGCTGCGGATCGTGCCGGTCCCGGTCATCCACGCGATTCATCTCCGACTGCAACGTCGAAATCAAATCATCCGCAGATAATGACAAACTTAGTCATAATTATAATTATAATAACTATAATAATAATTTTATGTCGCCGATTTCGGAAACCGAGAATTATTACAGGAAGAAGCGGAACGAGGAGAAGAGGAAGACGAAGAGGAAGAAATCGAAATTGAAAGCGAAACCGGAGCTTCCGTTTATAAATGTTTCGTCGGGAAACTGGTTCAGCGGCGAATTCGACGGCGGCGAAGAGATCAGCGAAGAAAGCGGAACTCCGATCTACTCTTCCAGAAGCTTCTCGACCGAATTTTCGCTGGTGATGGACACCATAGGCCAGAAGATCTCGGGACCGCACAAGCAGAGCAGCAAGAAGAGACCTAACAGTGGCGATTACGATAAGGTTCGTAGACCGAATTCAGATTCGGATTCGAAGAAATCGGTGGGGACGACGGGTGGCGAGTTCGGAAAGATAAAGACGGTGCTGCGGCCGATGAGGGCGTGCAGGGGGGAAGAGGGGAAGGTGAGGGAGAGCGTGGCGGTGGTGAAGAAGTCGGAGGATCCCTACGAGGACTTTAGAAGGTCGATGATGGAGATGATCATGGAAAAACAGATATTCGAGGCCAAGGAGTTGGAAGAGCTCCTCCATTGTTTCTTGACTTTGAATTCCCGCCATTACCAGGACGTTATTGTGGAGGCGTTTTCTGAGATTTGGGAGCTCTTGTTTTCCGAACCTTCGGACCAAGTGGGAAATTTGAATTCTCATATTGTCGTTTTTGCCCCTCATTGTTTACTAAATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ovate

Protein Analysis

357

Amino Acids

40.43

Weight (kDa)

9.25

Isoelectric Point (pI)

62.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 274 - 330 3.2e-25 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017382)

Species Orthologous Gene IDs
malus_domestica MD08G1033900.v1.1 MD15G1030700.v1.1
prunus_persica Prupe.1G381100_v2.0.a1
pyrus_communis pycom15g02680
rosa_chinensis RchiOBHm_Chr6g0300811
rosa_laevigata RLG00000011299
rosa_multiflora Rmu_sc0008947.1_g000002
rosa_roxburghii Rroxscaffold_7G00167390
rosa_rugosa Rorug06G0299300
rosa_samantha Rh6AG412300 Rh6BG419500 Rh6CG427000 Rh6DG412300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 330, 336, 470
AasI GACNNNNNNGTC 1 cut(s) 281
AccI GTMKAC 1 cut(s) 676
AccII CGCG 1 cut(s) 262
AclWI GGATC 3 cut(s) 244, 821, 834
AcoI YGGCCR 1 cut(s) 755
AcsI RAATTY 7 cut(s) 26, 503, 575, 682, 931, 1018, 1024
AcvI CACGTG 1 cut(s) 202
AfiI CCNNNNNNNGG 2 cut(s) 653, 946
AflIII ACRYGT 1 cut(s) 201
AgsI TTSAA 3 cut(s) 445, 931, 1024
AjnI CCWGG 1 cut(s) 945
AluBI AGCT 5 cut(s) 22, 460, 564, 907, 985
AluI AGCT 5 cut(s) 22, 460, 564, 907, 985
Alw21I GWGCWC 3 cut(s) 183, 909, 987
Alw26I GTCTC 1 cut(s) 637
AlwI GGATC 3 cut(s) 244, 821, 834
Ama87I CYCGRG 2 cut(s) 33, 613
AoxI GGCC 3 cut(s) 601, 755, 888
ApeKI GCWGC 3 cut(s) 231, 633, 751
ApoI RAATTY 7 cut(s) 26, 503, 575, 682, 931, 1018, 1024
ArsI GACNNNNNNTTYG 2 cut(s) 562, 594
AspS9I GGNCC 4 cut(s) 157, 246, 617, 1006
AsuC2I CCSGG 4 cut(s) 34, 35, 155, 250
AsuHPI GGTGA 4 cut(s) 139, 598, 802, 823
AsuII TTCGAA 1 cut(s) 698
AvaI CYCGRG 2 cut(s) 33, 613
AvaII GGWCC 4 cut(s) 157, 246, 617, 1006
BamHI GGATCC 1 cut(s) 826
BanII GRGCYC 2 cut(s) 909, 987
BbrPI CACGTG 1 cut(s) 202
BbsI GAAGAC 1 cut(s) 425
Bbv12I GWGCWC 3 cut(s) 183, 909, 987
BbvI GCAGC 3 cut(s) 218, 645, 738
BccI CCATC 2 cut(s) 583, 850
BceAI ACGGC 1 cut(s) 526
BciT130I CCWGG 1 cut(s) 947
BclI TGATCA 1 cut(s) 864
BcnI CCSGG 4 cut(s) 34, 35, 155, 250
BcoDI GTCTC 1 cut(s) 637
BglII AGATCT 1 cut(s) 609
BisI GCNGC 6 cut(s) 232, 499, 514, 634, 752, 755
BlsI GCNGC 6 cut(s) 233, 500, 515, 635, 753, 756
Bme1390I CCNGG 5 cut(s) 34, 35, 155, 250, 947
Bme18I GGWCC 4 cut(s) 157, 246, 617, 1006
BmeT110I CYCGRG 2 cut(s) 33, 613
BmgT120I GGNCC 4 cut(s) 157, 246, 617, 1006
BmiI GGNNCC 4 cut(s) 159, 248, 618, 828
BmrFI CCNGG 5 cut(s) 34, 35, 155, 250, 947
BpiI GAAGAC 1 cut(s) 425
BplI GAGNNNNNCTC 2 cut(s) 170, 202
Bpu14I TTCGAA 1 cut(s) 698
BpuMI CCSGG 4 cut(s) 34, 35, 155, 250
BsaAI YACGTR 1 cut(s) 202
BsaI GGTCTC 1 cut(s) 637
BsaJI CCNNGG 5 cut(s) 32, 33, 123, 226, 891
BsaWI WCCGGW 2 cut(s) 175, 454
BsaXI ACNNNNNCTCC 4 cut(s) 449, 479, 974, 1004
Bsc4I CCNNNNNNNGG 2 cut(s) 653, 946
Bse118I RCCGGY 3 cut(s) 85, 96, 243
Bse1I ACTGG 1 cut(s) 494
BseBI CCWGG 1 cut(s) 947
BseDI CCNNGG 5 cut(s) 32, 33, 123, 226, 891
BseGI GGATG 3 cut(s) 206, 254, 296
BseLI CCNNNNNNNGG 2 cut(s) 653, 946
BseMII CTCAG 1 cut(s) 963
BseNI ACTGG 1 cut(s) 494
BseRI GAGGAG 2 cut(s) 422, 899
BseX3I CGGCCG 1 cut(s) 755
BseXI GCAGC 3 cut(s) 218, 645, 738
BseYI CCCAGC 1 cut(s) 140
BsgI GTGCAG 1 cut(s) 790
Bsh1236I CGCG 1 cut(s) 262
Bsh1285I CGRYCG 2 cut(s) 573, 758
BshFI GGCC 3 cut(s) 603, 757, 890
BsiEI CGRYCG 2 cut(s) 573, 758
BsiHKAI GWGCWC 3 cut(s) 183, 909, 987
BsiHKCI CYCGRG 2 cut(s) 33, 613
BsiSI CCGG 8 cut(s) 34, 86, 97, 155, 176, 244, 250, 455
BslFI GGGAC 5 cut(s) 88, 143, 232, 630, 727
BslI CCNNNNNNNGG 2 cut(s) 653, 946
BsmAI GTCTC 1 cut(s) 637
BsmFI GGGAC 5 cut(s) 88, 143, 232, 630, 727
BsnI GGCC 3 cut(s) 603, 757, 890
Bso31I GGTCTC 1 cut(s) 637
BsoBI CYCGRG 2 cut(s) 33, 613
Bsp119I TTCGAA 1 cut(s) 698
Bsp1286I GDGCHC 3 cut(s) 183, 909, 987
Bsp143I GATC 6 cut(s) 236, 522, 546, 609, 826, 864
Bsp19I CCATGG 1 cut(s) 123
BspANI GGCC 3 cut(s) 603, 757, 890
BspCNI CTCAG 1 cut(s) 964
BspFNI CGCG 1 cut(s) 262
BspLI GGNNCC 4 cut(s) 159, 248, 618, 828
BspPI GGATC 3 cut(s) 244, 821, 834
BspQI GCTCTTC 1 cut(s) 897
BspT104I TTCGAA 1 cut(s) 698
BspTNI GGTCTC 1 cut(s) 637
BsrFI RCCGGY 3 cut(s) 85, 96, 243
BsrI ACTGG 1 cut(s) 494
BssAI RCCGGY 3 cut(s) 85, 96, 243
BssECI CCNNGG 5 cut(s) 32, 33, 123, 226, 891
BssMI GATC 6 cut(s) 236, 522, 546, 609, 826, 864
BssT1I CCWWGG 2 cut(s) 123, 891
Bst2UI CCWGG 1 cut(s) 947
Bst4CI ACNGT 3 cut(s) 168, 653, 748
Bst6I CTCTTC 7 cut(s) 407, 419, 513, 559, 635, 774, 897
BstBAI YACGTR 1 cut(s) 202
BstBI TTCGAA 1 cut(s) 698
BstC8I GCNNGC 1 cut(s) 769
BstDEI CTNAG 2 cut(s) 317, 972
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 3 cut(s) 206, 254, 296
BstFNI CGCG 1 cut(s) 262
BstKTI GATC 6 cut(s) 239, 525, 549, 612, 829, 867
BstMAI GTCTC 1 cut(s) 637
BstMBI GATC 6 cut(s) 236, 522, 546, 609, 826, 864
BstMCI CGRYCG 2 cut(s) 573, 758
BstMWI GCNNNNNNNGC 3 cut(s) 141, 240, 534
BstNI CCWGG 1 cut(s) 947
BstSCI CCNGG 5 cut(s) 32, 33, 153, 248, 945
BstUI CGCG 1 cut(s) 262
BstV1I GCAGC 3 cut(s) 218, 645, 738
BstV2I GAAGAC 1 cut(s) 425
BstX2I RGATCY 2 cut(s) 609, 826
BstXI CCANNNNNNTGG 2 cut(s) 124, 898
BstYI RGATCY 2 cut(s) 609, 826
BstZI CGGCCG 1 cut(s) 755
BsuRI GGCC 3 cut(s) 603, 757, 890
BtgI CCRYGG 1 cut(s) 123
BtsCI GGATG 3 cut(s) 206, 254, 296
BtsIMutI CAGTG 1 cut(s) 658
Cac8I GCNNGC 1 cut(s) 769
Cfr10I RCCGGY 3 cut(s) 85, 96, 243
Cfr13I GGNCC 4 cut(s) 157, 246, 617, 1006
Cfr9I CCCGGG 1 cut(s) 33
CviAII CATG 2 cut(s) 124, 868
DdeI CTNAG 2 cut(s) 317, 972
DpnI GATC 6 cut(s) 238, 524, 548, 611, 828, 866
DpnII GATC 6 cut(s) 236, 522, 546, 609, 826, 864
DrdI GACNNNNNNGTC 1 cut(s) 281
DseDI GACNNNNNNGTC 1 cut(s) 281
EaeI YGGCCR 1 cut(s) 755
EagI CGGCCG 1 cut(s) 755
Eam1104I CTCTTC 7 cut(s) 407, 419, 513, 559, 635, 774, 897
EarI CTCTTC 7 cut(s) 407, 419, 513, 559, 635, 774, 897
Ecl136II GAGCTC 2 cut(s) 907, 985
EclXI CGGCCG 1 cut(s) 755
Eco130I CCWWGG 2 cut(s) 123, 891
Eco24I GRGCYC 2 cut(s) 909, 987
Eco31I GGTCTC 1 cut(s) 637
Eco47I GGWCC 4 cut(s) 157, 246, 617, 1006
Eco52I CGGCCG 1 cut(s) 755
Eco53kI GAGCTC 2 cut(s) 907, 985
Eco72I CACGTG 1 cut(s) 202
Eco88I CYCGRG 2 cut(s) 33, 613
EcoICRI GAGCTC 2 cut(s) 907, 985
EcoRI GAATTC 4 cut(s) 503, 682, 931, 1024
EcoRII CCWGG 1 cut(s) 945
EcoT14I CCWWGG 2 cut(s) 123, 891
EcoT38I GRGCYC 2 cut(s) 909, 987
ErhI CCWWGG 2 cut(s) 123, 891
FaeI CATG 2 cut(s) 127, 871
FaqI GGGAC 5 cut(s) 88, 143, 232, 630, 727
FatI CATG 2 cut(s) 123, 867
FauI CCCGC 3 cut(s) 51, 168, 944
FbaI TGATCA 1 cut(s) 864
FblI GTMKAC 1 cut(s) 676
Fnu4HI GCNGC 6 cut(s) 232, 499, 514, 634, 752, 755
FokI GGATG 3 cut(s) 193, 241, 283
FriOI GRGCYC 2 cut(s) 909, 987
Fsp4HI GCNGC 6 cut(s) 232, 499, 514, 634, 752, 755
GluI GCNGC 6 cut(s) 232, 499, 514, 634, 752, 755
GsaI CCCAGC 1 cut(s) 144
HaeIII GGCC 3 cut(s) 603, 757, 890
HapII CCGG 8 cut(s) 34, 86, 97, 155, 176, 244, 250, 455
Hin1II CATG 2 cut(s) 127, 871
HindIII AAGCTT 1 cut(s) 562
HinfI GANTC 3 cut(s) 264, 689, 695
HpaII CCGG 8 cut(s) 34, 86, 97, 155, 176, 244, 250, 455
HphI GGTGA 4 cut(s) 139, 598, 802, 823
Hpy166II GTNNAC 3 cut(s) 112, 677, 1058
Hpy188III TCNNGA 5 cut(s) 483, 558, 568, 615, 922
Hpy8I GTNNAC 3 cut(s) 112, 677, 1058
Hpy99I CGWCG 4 cut(s) 287, 484, 512, 721
HpyAV CCTTC 3 cut(s) 781, 840, 1011
HpyCH4III ACNGT 3 cut(s) 168, 653, 748
HpyCH4IV ACGT 3 cut(s) 201, 282, 951
HpyCH4V TGCA 2 cut(s) 279, 771
HpyF10VI GCNNNNNNNGC 3 cut(s) 141, 240, 534
HpyF3I CTNAG 2 cut(s) 317, 972
HpySE526I ACGT 3 cut(s) 201, 282, 951
Hsp92II CATG 2 cut(s) 127, 871
Ksp22I TGATCA 1 cut(s) 864
Kzo9I GATC 6 cut(s) 236, 522, 546, 609, 826, 864
LguI GCTCTTC 1 cut(s) 897
LmnI GCTCC 5 cut(s) 17, 178, 457, 912, 982
Lsp1109I GCAGC 3 cut(s) 218, 645, 738
MaeII ACGT 3 cut(s) 201, 282, 951
MalI GATC 6 cut(s) 238, 524, 548, 611, 828, 866
MboI GATC 6 cut(s) 236, 522, 546, 609, 826, 864
MflI RGATCY 2 cut(s) 609, 826
MhlI GDGCHC 3 cut(s) 183, 909, 987
MmeI TCCRAC 3 cut(s) 297, 801, 879
MseI TTAA 1 cut(s) 18
MspA1I CMGCKG 1 cut(s) 498
MspI CCGG 8 cut(s) 34, 86, 97, 155, 176, 244, 250, 455
MspR9I CCNGG 5 cut(s) 34, 35, 155, 250, 947
MvaI CCWGG 1 cut(s) 947
MvnI CGCG 1 cut(s) 262
MwoI GCNNNNNNNGC 3 cut(s) 141, 240, 534
NciI CCSGG 4 cut(s) 34, 35, 155, 250
NcoI CCATGG 1 cut(s) 123
NdeII GATC 6 cut(s) 236, 522, 546, 609, 826, 864
NlaIII CATG 2 cut(s) 127, 871
NlaIV GGNNCC 4 cut(s) 159, 248, 618, 828
NmeAIII GCCGAG 1 cut(s) 207
NspV TTCGAA 1 cut(s) 698
PciSI GCTCTTC 1 cut(s) 897
PcsI WCGNNNNNNNCGW 2 cut(s) 513, 713
PfeI GAWTC 3 cut(s) 264, 689, 695
PkrI GCNGC 6 cut(s) 233, 500, 515, 635, 753, 756
PmaCI CACGTG 1 cut(s) 202
PmlI CACGTG 1 cut(s) 202
Ppu21I YACGTR 1 cut(s) 202
PsiI TTATAA 3 cut(s) 330, 336, 470
Psp124BI GAGCTC 2 cut(s) 909, 987
Psp6I CCWGG 1 cut(s) 945
PspCI CACGTG 1 cut(s) 202
PspFI CCCAGC 1 cut(s) 140
PspGI CCWGG 1 cut(s) 945
PspN4I GGNNCC 4 cut(s) 159, 248, 618, 828
PspPI GGNCC 4 cut(s) 157, 246, 617, 1006
PsuI RGATCY 2 cut(s) 609, 826
SacI GAGCTC 2 cut(s) 909, 987
SapI GCTCTTC 1 cut(s) 897
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 6 cut(s) 232, 499, 514, 634, 752, 755
Sau3AI GATC 6 cut(s) 236, 522, 546, 609, 826, 864
Sau96I GGNCC 4 cut(s) 157, 246, 617, 1006
ScrFI CCNGG 5 cut(s) 34, 35, 155, 250, 947
SduI GDGCHC 3 cut(s) 183, 909, 987
SfuI TTCGAA 1 cut(s) 698
SinI GGWCC 4 cut(s) 157, 246, 617, 1006
SmaI CCCGGG 1 cut(s) 35
SstI GAGCTC 2 cut(s) 909, 987
StyD4I CCNGG 5 cut(s) 32, 33, 153, 248, 945
StyI CCWWGG 2 cut(s) 123, 891
TaaI ACNGT 3 cut(s) 168, 653, 748
TaiI ACGT 3 cut(s) 204, 285, 954
TaqI TCGA 7 cut(s) 285, 437, 507, 569, 698, 851, 885
TaqII GACCGA 2 cut(s) 587, 694
TauI GCSGC 3 cut(s) 501, 516, 757
TfiI GAWTC 3 cut(s) 264, 689, 695
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 1 cut(s) 658
TseI GCWGC 3 cut(s) 231, 633, 751
TspDTI ATGAA 1 cut(s) 256
TspGWI ACGGA 2 cut(s) 178, 453
TspMI CCCGGG 1 cut(s) 33
TspRI CASTG 1 cut(s) 658
VpaK11BI GGWCC 4 cut(s) 157, 246, 617, 1006
XapI RAATTY 7 cut(s) 26, 503, 575, 682, 931, 1018, 1024
XmaI CCCGGG 1 cut(s) 33
XmiI GTMKAC 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.