MD15G1030700.v1.1

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0017382
Physical Location & Seq
Reverse (-)
1887975 .. 1889000
1026 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1030700.v1.1.491

Sequence Viewer

Length: 1026 bp
ATGGCTAAACGCTCCTTTAAGCTCAAATTCCCTCGGGTTATCCCGCTAATCCAACTCTGTCGCCCCAAACGCAACTCCACTTTACCGGCAATTTACCGGCTGTCCCCCGTAAACGCCAAAGCCATGGGCATCGGCTTCCCCAGCCTCACCCTCCCGGCCCCGCCACCGTCCACACCGGAGGACCCCTCCGTAAAGTGCCACGTGTCATCCAAGCCCACCAAATCCCTCGGCTGCGGATCGTGCCGGTCCCGGTCATCCACGCGATTCATCTCCGACTGCAACGTCGAAATCAAATCATCCGCAGATAATGACGAACTTAATCATAATTATAATAACTATAATAATAATCTTATGTCGCCGATTTCGGAAACCGAGAATTATTACAGGAAGAAGCGGAAGAAGGAGAAGAGGAAGACGAAGAAGAAGCAATCGAAATTGAAAGCGAAACCGGAGCTTCCGTTTATAAATATTTCGTCCGGAAACTGGTTCAGCGGCGAATTCGACGGCGGCGAAGAGATCAGCGAAGAAAGCGGAACTCCGATCTACTCTTCCAGAAGCTTCTCGACCGAATTTTCGCTGGTGATGGACACCATAGGCCAGAAGATCTCGGGACCGCCGCACAAGCAGAGCAGCAAGAGGAGACCTAACAGTGGCGATTACGATAAGGTTCGTAGATCGAATTCAGATTCGGATTCGAAGAAATCGGCGGGGACGACGGGCGGCGAGTTCGGAAAGATAAAGACGGTGCTGCGGCCGATGAGGGCGTGCAGTGGGGAAGAGGGGAAGGTGAGGGAGAGCGTGGCGGTGGTGAAGAAGTCGGAGGATCCCTTCGAGGACTTTAGGAGGTCGATGATGGAGATGATCATGGAAAAACAGATATTCGAGGCCAAGGAGTTGGAAGGGCTCCTCCATTGTTTCTTGACTTTGAATTCCCGCCACTACCAGGACGTTATTGTGGAGGCGTTTTCTGAGATTTGGGAGCTCTTGTTTTCCGACCCTTCGGACCAAGTGGGAAATTTGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ovate

Protein Analysis

342

Amino Acids

38.37

Weight (kDa)

9.37

Isoelectric Point (pI)

67.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 273 - 329 1e-23 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017382)

Species Orthologous Gene IDs
malus_domestica MD08G1033900.v1.1 MD15G1030700.v1.1
prunus_persica Prupe.1G381100_v2.0.a1
pyrus_communis pycom15g02680
rosa_chinensis RchiOBHm_Chr6g0300811
rosa_laevigata RLG00000011299
rosa_multiflora Rmu_sc0008947.1_g000002
rosa_roxburghii Rroxscaffold_7G00167390
rosa_rugosa Rorug06G0299300
rosa_samantha Rh6AG412300 Rh6BG419500 Rh6CG427000 Rh6DG412300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 330, 464
AasI GACNNNNNNGTC 1 cut(s) 281
AccII CGCG 1 cut(s) 262
AccIII TCCGGA 1 cut(s) 476
AclWI GGATC 3 cut(s) 244, 818, 831
AcoI YGGCCR 1 cut(s) 752
AcsI RAATTY 6 cut(s) 26, 497, 569, 679, 928, 1015
AcvI CACGTG 1 cut(s) 202
AfiI CCNNNNNNNGG 3 cut(s) 483, 650, 943
AflIII ACRYGT 1 cut(s) 201
AgsI TTSAA 3 cut(s) 439, 928, 1021
AjnI CCWGG 1 cut(s) 942
AluBI AGCT 4 cut(s) 22, 454, 558, 982
AluI AGCT 4 cut(s) 22, 454, 558, 982
Alw21I GWGCWC 1 cut(s) 984
Alw26I GTCTC 1 cut(s) 634
AlwI GGATC 3 cut(s) 244, 818, 831
Ama87I CYCGRG 2 cut(s) 33, 607
Aor13HI TCCGGA 1 cut(s) 476
AoxI GGCC 4 cut(s) 156, 595, 752, 885
ApeKI GCWGC 3 cut(s) 231, 630, 748
ApoI RAATTY 6 cut(s) 26, 497, 569, 679, 928, 1015
ArsI GACNNNNNNTTYG 2 cut(s) 556, 588
AspS9I GGNCC 5 cut(s) 157, 181, 246, 611, 1003
AsuC2I CCSGG 2 cut(s) 155, 250
AsuHPI GGTGA 4 cut(s) 139, 592, 799, 820
AsuII TTCGAA 1 cut(s) 695
AvaI CYCGRG 2 cut(s) 33, 607
AvaII GGWCC 4 cut(s) 181, 246, 611, 1003
BamHI GGATCC 1 cut(s) 823
BanII GRGCYC 2 cut(s) 906, 984
BbrPI CACGTG 1 cut(s) 202
BbsI GAAGAC 1 cut(s) 419
Bbv12I GWGCWC 1 cut(s) 984
BbvI GCAGC 3 cut(s) 218, 642, 735
BccI CCATC 2 cut(s) 577, 847
BceAI ACGGC 1 cut(s) 520
BciT130I CCWGG 1 cut(s) 944
BclI TGATCA 1 cut(s) 861
BcnI CCSGG 2 cut(s) 155, 250
BcoDI GTCTC 1 cut(s) 634
BglII AGATCT 1 cut(s) 603
BisI GCNGC 8 cut(s) 232, 493, 508, 617, 631, 721, 749, 752
BlsI GCNGC 8 cut(s) 233, 494, 509, 618, 632, 722, 750, 753
Bme1390I CCNGG 3 cut(s) 155, 250, 944
Bme18I GGWCC 4 cut(s) 181, 246, 611, 1003
BmeT110I CYCGRG 2 cut(s) 33, 607
BmgT120I GGNCC 5 cut(s) 157, 181, 246, 611, 1003
BmiI GGNNCC 6 cut(s) 159, 183, 248, 612, 825, 905
BmrFI CCNGG 3 cut(s) 155, 250, 944
BmsI GCATC 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 419
BplI GAGNNNNNCTC 2 cut(s) 170, 202
Bpu14I TTCGAA 1 cut(s) 695
BpuMI CCSGG 2 cut(s) 155, 250
BsaAI YACGTR 1 cut(s) 202
BsaI GGTCTC 1 cut(s) 634
BsaJI CCNNGG 4 cut(s) 32, 123, 226, 888
BsaWI WCCGGW 3 cut(s) 175, 448, 476
BsaXI ACNNNNNCTCC 4 cut(s) 443, 473, 971, 1001
Bsc4I CCNNNNNNNGG 3 cut(s) 483, 650, 943
Bse118I RCCGGY 3 cut(s) 85, 96, 243
Bse1I ACTGG 1 cut(s) 488
BseAI TCCGGA 1 cut(s) 476
BseBI CCWGG 1 cut(s) 944
BseDI CCNNGG 4 cut(s) 32, 123, 226, 888
BseGI GGATG 3 cut(s) 206, 254, 296
BseLI CCNNNNNNNGG 3 cut(s) 483, 650, 943
BseMII CTCAG 1 cut(s) 960
BseNI ACTGG 1 cut(s) 488
BseRI GAGGAG 2 cut(s) 652, 896
BseX3I CGGCCG 1 cut(s) 752
BseXI GCAGC 3 cut(s) 218, 642, 735
BseYI CCCAGC 1 cut(s) 140
BsgI GTGCAG 1 cut(s) 787
Bsh1236I CGCG 1 cut(s) 262
Bsh1285I CGRYCG 2 cut(s) 567, 755
BshFI GGCC 4 cut(s) 158, 597, 754, 887
BsiEI CGRYCG 2 cut(s) 567, 755
BsiHKAI GWGCWC 1 cut(s) 984
BsiHKCI CYCGRG 2 cut(s) 33, 607
BsiSI CCGG 8 cut(s) 86, 97, 155, 176, 244, 250, 449, 477
BslFI GGGAC 4 cut(s) 88, 232, 624, 724
BslI CCNNNNNNNGG 3 cut(s) 483, 650, 943
BsmAI GTCTC 1 cut(s) 634
BsmFI GGGAC 4 cut(s) 88, 232, 624, 724
BsnI GGCC 4 cut(s) 158, 597, 754, 887
Bso31I GGTCTC 1 cut(s) 634
BsoBI CYCGRG 2 cut(s) 33, 607
Bsp119I TTCGAA 1 cut(s) 695
Bsp1286I GDGCHC 2 cut(s) 906, 984
Bsp13I TCCGGA 1 cut(s) 476
Bsp143I GATC 7 cut(s) 236, 516, 540, 603, 674, 823, 861
Bsp19I CCATGG 1 cut(s) 123
BspANI GGCC 4 cut(s) 158, 597, 754, 887
BspCNI CTCAG 1 cut(s) 961
BspEI TCCGGA 1 cut(s) 476
BspFNI CGCG 1 cut(s) 262
BspLI GGNNCC 6 cut(s) 159, 183, 248, 612, 825, 905
BspPI GGATC 3 cut(s) 244, 818, 831
BspT104I TTCGAA 1 cut(s) 695
BspTNI GGTCTC 1 cut(s) 634
BsrFI RCCGGY 3 cut(s) 85, 96, 243
BsrI ACTGG 1 cut(s) 488
BssAI RCCGGY 3 cut(s) 85, 96, 243
BssECI CCNNGG 4 cut(s) 32, 123, 226, 888
BssMI GATC 7 cut(s) 236, 516, 540, 603, 674, 823, 861
BssT1I CCWWGG 2 cut(s) 123, 888
Bst2UI CCWGG 1 cut(s) 944
Bst4CI ACNGT 3 cut(s) 168, 650, 745
Bst6I CTCTTC 4 cut(s) 401, 507, 553, 771
BstBAI YACGTR 1 cut(s) 202
BstBI TTCGAA 1 cut(s) 695
BstC8I GCNNGC 1 cut(s) 766
BstDEI CTNAG 1 cut(s) 969
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 3 cut(s) 206, 254, 296
BstFNI CGCG 1 cut(s) 262
BstKTI GATC 7 cut(s) 239, 519, 543, 606, 677, 826, 864
BstMAI GTCTC 1 cut(s) 634
BstMBI GATC 7 cut(s) 236, 516, 540, 603, 674, 823, 861
BstMCI CGRYCG 2 cut(s) 567, 755
BstMWI GCNNNNNNNGC 5 cut(s) 69, 141, 240, 528, 622
BstNI CCWGG 1 cut(s) 944
BstSCI CCNGG 3 cut(s) 153, 248, 942
BstUI CGCG 1 cut(s) 262
BstV1I GCAGC 3 cut(s) 218, 642, 735
BstV2I GAAGAC 1 cut(s) 419
BstX2I RGATCY 2 cut(s) 603, 823
BstXI CCANNNNNNTGG 2 cut(s) 124, 895
BstYI RGATCY 2 cut(s) 603, 823
BstZI CGGCCG 1 cut(s) 752
BsuRI GGCC 4 cut(s) 158, 597, 754, 887
BtgI CCRYGG 1 cut(s) 123
BtsCI GGATG 3 cut(s) 206, 254, 296
BtsI GCAGTG 1 cut(s) 775
BtsIMutI CAGTG 2 cut(s) 655, 775
Cac8I GCNNGC 1 cut(s) 766
Cfr10I RCCGGY 3 cut(s) 85, 96, 243
Cfr13I GGNCC 5 cut(s) 157, 181, 246, 611, 1003
CviAII CATG 2 cut(s) 124, 865
DdeI CTNAG 1 cut(s) 969
DpnI GATC 7 cut(s) 238, 518, 542, 605, 676, 825, 863
DpnII GATC 7 cut(s) 236, 516, 540, 603, 674, 823, 861
DrdI GACNNNNNNGTC 1 cut(s) 281
DseDI GACNNNNNNGTC 1 cut(s) 281
EaeI YGGCCR 1 cut(s) 752
EagI CGGCCG 1 cut(s) 752
Eam1104I CTCTTC 4 cut(s) 401, 507, 553, 771
EarI CTCTTC 4 cut(s) 401, 507, 553, 771
Ecl136II GAGCTC 1 cut(s) 982
EclXI CGGCCG 1 cut(s) 752
Eco130I CCWWGG 2 cut(s) 123, 888
Eco24I GRGCYC 2 cut(s) 906, 984
Eco31I GGTCTC 1 cut(s) 634
Eco47I GGWCC 4 cut(s) 181, 246, 611, 1003
Eco52I CGGCCG 1 cut(s) 752
Eco53kI GAGCTC 1 cut(s) 982
Eco72I CACGTG 1 cut(s) 202
Eco88I CYCGRG 2 cut(s) 33, 607
EcoICRI GAGCTC 1 cut(s) 982
EcoO109I RGGNCCY 1 cut(s) 181
EcoRI GAATTC 3 cut(s) 497, 679, 928
EcoRII CCWGG 1 cut(s) 942
EcoT14I CCWWGG 2 cut(s) 123, 888
EcoT38I GRGCYC 2 cut(s) 906, 984
ErhI CCWWGG 2 cut(s) 123, 888
FaeI CATG 2 cut(s) 127, 868
FaiI YATR 8 cut(s) 125, 324, 330, 339, 353, 464, 593, 866
FaqI GGGAC 4 cut(s) 88, 232, 624, 724
FatI CATG 2 cut(s) 123, 864
FauI CCCGC 4 cut(s) 51, 168, 700, 941
FbaI TGATCA 1 cut(s) 861
Fnu4HI GCNGC 8 cut(s) 232, 493, 508, 617, 631, 721, 749, 752
FokI GGATG 3 cut(s) 193, 241, 283
FriOI GRGCYC 2 cut(s) 906, 984
Fsp4HI GCNGC 8 cut(s) 232, 493, 508, 617, 631, 721, 749, 752
GluI GCNGC 8 cut(s) 232, 493, 508, 617, 631, 721, 749, 752
GsaI CCCAGC 1 cut(s) 144
HaeIII GGCC 4 cut(s) 158, 597, 754, 887
HapII CCGG 8 cut(s) 86, 97, 155, 176, 244, 250, 449, 477
Hin1II CATG 2 cut(s) 127, 868
HindIII AAGCTT 1 cut(s) 556
HinfI GANTC 3 cut(s) 264, 686, 692
HpaII CCGG 8 cut(s) 86, 97, 155, 176, 244, 250, 449, 477
HphI GGTGA 4 cut(s) 139, 592, 799, 820
Hpy166II GTNNAC 2 cut(s) 112, 171
Hpy188III TCNNGA 5 cut(s) 477, 552, 562, 609, 919
Hpy8I GTNNAC 2 cut(s) 112, 171
Hpy99I CGWCG 3 cut(s) 287, 506, 718
HpyAV CCTTC 5 cut(s) 394, 778, 838, 893, 1008
HpyCH4III ACNGT 3 cut(s) 168, 650, 745
HpyCH4IV ACGT 3 cut(s) 201, 282, 948
HpyCH4V TGCA 2 cut(s) 279, 768
HpyF10VI GCNNNNNNNGC 5 cut(s) 69, 141, 240, 528, 622
HpyF3I CTNAG 1 cut(s) 969
HpySE526I ACGT 3 cut(s) 201, 282, 948
Hsp92II CATG 2 cut(s) 127, 868
Kpn2I TCCGGA 1 cut(s) 476
Ksp22I TGATCA 1 cut(s) 861
Kzo9I GATC 7 cut(s) 236, 516, 540, 603, 674, 823, 861
LmnI GCTCC 4 cut(s) 17, 451, 909, 979
Lsp1109I GCAGC 3 cut(s) 218, 642, 735
LweI GCATC 1 cut(s) 138
MaeII ACGT 3 cut(s) 201, 282, 948
MalI GATC 7 cut(s) 238, 518, 542, 605, 676, 825, 863
MboI GATC 7 cut(s) 236, 516, 540, 603, 674, 823, 861
MflI RGATCY 2 cut(s) 603, 823
MhlI GDGCHC 2 cut(s) 906, 984
MmeI TCCRAC 5 cut(s) 76, 297, 798, 876, 1017
MroI TCCGGA 1 cut(s) 476
MseI TTAA 3 cut(s) 18, 318, 1024
MspA1I CMGCKG 1 cut(s) 492
MspI CCGG 8 cut(s) 86, 97, 155, 176, 244, 250, 449, 477
MspR9I CCNGG 3 cut(s) 155, 250, 944
MvaI CCWGG 1 cut(s) 944
MvnI CGCG 1 cut(s) 262
MwoI GCNNNNNNNGC 5 cut(s) 69, 141, 240, 528, 622
NciI CCSGG 2 cut(s) 155, 250
NcoI CCATGG 1 cut(s) 123
NdeII GATC 7 cut(s) 236, 516, 540, 603, 674, 823, 861
NlaIII CATG 2 cut(s) 127, 868
NlaIV GGNNCC 6 cut(s) 159, 183, 248, 612, 825, 905
NmeAIII GCCGAG 1 cut(s) 207
NspV TTCGAA 1 cut(s) 695
PcsI WCGNNNNNNNCGW 2 cut(s) 507, 710
PfeI GAWTC 3 cut(s) 264, 686, 692
PkrI GCNGC 8 cut(s) 233, 494, 509, 618, 632, 722, 750, 753
PmaCI CACGTG 1 cut(s) 202
PmlI CACGTG 1 cut(s) 202
Ppu21I YACGTR 1 cut(s) 202
PpuMI RGGWCCY 1 cut(s) 181
PsiI TTATAA 2 cut(s) 330, 464
Psp124BI GAGCTC 1 cut(s) 984
Psp5II RGGWCCY 1 cut(s) 181
Psp6I CCWGG 1 cut(s) 942
PspCI CACGTG 1 cut(s) 202
PspFI CCCAGC 1 cut(s) 140
PspGI CCWGG 1 cut(s) 942
PspN4I GGNNCC 6 cut(s) 159, 183, 248, 612, 825, 905
PspPI GGNCC 5 cut(s) 157, 181, 246, 611, 1003
PspPPI RGGWCCY 1 cut(s) 181
PsuI RGATCY 2 cut(s) 603, 823
SacI GAGCTC 1 cut(s) 984
SaqAI TTAA 3 cut(s) 18, 318, 1024
SatI GCNGC 8 cut(s) 232, 493, 508, 617, 631, 721, 749, 752
Sau3AI GATC 7 cut(s) 236, 516, 540, 603, 674, 823, 861
Sau96I GGNCC 5 cut(s) 157, 181, 246, 611, 1003
ScrFI CCNGG 3 cut(s) 155, 250, 944
SduI GDGCHC 2 cut(s) 906, 984
SfaNI GCATC 1 cut(s) 138
SfuI TTCGAA 1 cut(s) 695
SinI GGWCC 4 cut(s) 181, 246, 611, 1003
SspI AATATT 1 cut(s) 469
SstI GAGCTC 1 cut(s) 984
StyD4I CCNGG 3 cut(s) 153, 248, 942
StyI CCWWGG 2 cut(s) 123, 888
TaaI ACNGT 3 cut(s) 168, 650, 745
TaiI ACGT 3 cut(s) 204, 285, 951
TaqI TCGA 9 cut(s) 285, 431, 501, 563, 677, 695, 831, 848, 882
TaqII GACCGA 1 cut(s) 581
TauI GCSGC 5 cut(s) 495, 510, 619, 723, 754
TfiI GAWTC 3 cut(s) 264, 686, 692
Tru1I TTAA 3 cut(s) 18, 318, 1024
Tru9I TTAA 3 cut(s) 18, 318, 1024
TscAI CASTG 2 cut(s) 655, 775
TseI GCWGC 3 cut(s) 231, 630, 748
TspDTI ATGAA 1 cut(s) 256
TspGWI ACGGA 2 cut(s) 178, 447
TspRI CASTG 2 cut(s) 655, 775
VpaK11BI GGWCC 4 cut(s) 181, 246, 611, 1003
XapI RAATTY 6 cut(s) 26, 497, 569, 679, 928, 1015
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.