MD08G1156600.v1.1

ACT domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
17430126 .. 17432489
2364 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1156600.v1.1.491

Sequence Viewer

Length: 1521 bp
ATGTGCAGCATGAAGAAAGTTTGTTGGCCTTACTTTGATCCTGACTTTGATAATCTCCCAGAGAGGATATATGGCCCTGCTTGTCAAGTATGCATCGACAACGAAGGAATGGAAGATTGCACAGTAGTAAAGGTGGATAGCGTGAACAAGGAAGGGCTTCTCCTGGAAGTGGTGCAAGTTTTGACAGACATGAACCTCACCATCACTAAAAGTTACATTTCTTCTGATGCTGGATGGTTCATGGATGTTTTTCATGTGAAAGATGAACATGGCAACAAAGTTACAGACCAGAATGTCCTTAACTATATTCAACAGGCCATAGGTACAGCCACAGGCCCCCCAGACTTGGCCAAGTCCTACGCCAACAACAACCCTATTTTATTCGAACCCGAAAACCCTATTGAACACACCAGTGAAAATCCTAGCGAGCACACTACCATTGAAATGACCGGTACAGACCGGCCCGGTTTGTTTTCAGAGATCTCCGCTGCCCTGGCGGATCTCCAATGCAACATAGTAGAAGCGCATGCATGGAGCCACAATGCTTGCCTGGCATGTGTTGCTCAAATATCTGATACATCTACCGACACCCCAATCGACGACCCCCGACGCATTGCCACCATAGAAGACCACCTAATCACCGTCCTCCGTGCCACCACAGCCCTCAGCCCGTTTGGGAAGGAACCCAATTGTCAACAAGAAGTGAAGACCTCTGGGCTTATGGGAGGAGGAGATAGTAATCATAATATTCACCAAGGCAGCATGAGTACTAATGTGGACCGTAGGTTGCACCAGCTCATGCTCTCTGTGAGGGACTTTGATGGGCCTCACTTGAGGCCTGCAAGCTCGCCAAGGACGCCCTTGGGGTTGGATAGTGAGGAGGAGAGTCGGAAGACAGTGGTTTGGATTGAGAGTTGTAAGGAAAAAGGGTATTCAATGGTGACTATCGAGTGCAAGGATCGGCCGAGGCTCATGTTTGATACTGTGTGCACTCTCACTGACATGCAATATGTAATTTTCCATGCTTCTGCTAGTGCCCAAGAAGGTTATTCCTTTCAGGAGTATTTTATTCGACACATCGATGGGGATGCCCTGTGTACTGAAAGTGAGAAGGAAAGAGTAATAAAATGCTTAGAGGCTGCTATTGAGCGTCGGGTTTGTGAGGGTGTTCGGCTAGAACTATGCGCAGACAATAGGATAGGGTTGCTCTCGGATATAACTAGGGTTCTACGGGAGAATGGACTTGCGGTTGTTCGAGCAGATGTAGCAACGCAAGGAAAAAAGGCCGTAAACGCCTTCTACGTCAGGGATATTTCAGGCAAAGAAGTAGTAGACATGGATTTGATCGAGTCGATGAAGAGAGAATTAGTGGGTGAAAATCCAATAGATTTTCAAGTCAAGAATGACACATGGATGAGACCGAACTCACTTGAAAAAGGGTCGTCCCCTCTCTCTAATTTTGGAGACATGCTAAAATCTCAGATTGAGCGATTTTCGTACAAGTTTGTCAAGATCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

507

Amino Acids

56.59

Weight (kDa)

4.97

Isoelectric Point (pI)

45.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-TF_ACT-like_plant PF22754 37 - 107 1.4e-06 Plant bHLH transcription factor, ACT-like domain
ACT PF01842 145 - 179 5.7e-06 ACT domain
ACT_6 PF13740 147 - 191 1.8e-06 ACT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011257)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 293
Acc16I TGCGCA 1 cut(s) 1186
AccI GTMKAC 1 cut(s) 1332
AciI CCGC 3 cut(s) 486, 497, 1247
AclWI GGATC 3 cut(s) 32, 507, 966
AcoI YGGCCR 2 cut(s) 348, 962
AcyI GRCGYC 1 cut(s) 857
AfaI GTAC 5 cut(s) 325, 454, 769, 1099, 1499
AfiI CCNNNNNNNGG 2 cut(s) 169, 346
AgeI ACCGGT 1 cut(s) 449
AgsI TTSAA 6 cut(s) 311, 404, 443, 936, 1394, 1433
AjnI CCWGG 3 cut(s) 162, 492, 549
AleI CACNNNNGTG 1 cut(s) 411
AluBI AGCT 2 cut(s) 796, 846
AluI AGCT 2 cut(s) 796, 846
Alw21I GWGCWC 2 cut(s) 432, 992
Alw26I GTCTC 2 cut(s) 1411, 1458
Alw44I GTGCAC 1 cut(s) 988
AlwI GGATC 3 cut(s) 32, 507, 966
ApaLI GTGCAC 1 cut(s) 988
ApeKI GCWGC 4 cut(s) 6, 488, 759, 1139
AsiGI ACCGGT 1 cut(s) 449
Asp700I GAANNNNTTC 1 cut(s) 156
AspLEI GCGC 2 cut(s) 526, 1187
AspS9I GGNCC 5 cut(s) 74, 335, 462, 778, 824
AsuC2I CCSGG 1 cut(s) 465
AsuHPI GGTGA 5 cut(s) 190, 631, 743, 952, 1385
AsuII TTCGAA 1 cut(s) 384
AvaII GGWCC 1 cut(s) 778
BaeGI GKGCMC 2 cut(s) 992, 1039
BalI TGGCCA 1 cut(s) 350
BbsI GAAGAC 3 cut(s) 633, 713, 899
Bbv12I GWGCWC 2 cut(s) 432, 992
BbvCI CCTCAGC 1 cut(s) 665
BbvI GCAGC 4 cut(s) 18, 475, 771, 1126
BccI CCATC 4 cut(s) 209, 228, 815, 1076
BceAI ACGGC 1 cut(s) 1271
BcgI CGANNNNNNTGC 2 cut(s) 1070, 1104
BciT130I CCWGG 3 cut(s) 164, 494, 551
BcnI CCSGG 1 cut(s) 465
BcoDI GTCTC 2 cut(s) 1411, 1458
BfaI CTAG 4 cut(s) 423, 1032, 1175, 1221
BglII AGATCT 1 cut(s) 480
BisI GCNGC 4 cut(s) 7, 489, 760, 1140
BlsI GCNGC 4 cut(s) 8, 490, 761, 1141
BmcAI AGTACT 1 cut(s) 769
Bme1390I CCNGG 4 cut(s) 164, 465, 494, 551
Bme18I GGWCC 1 cut(s) 778
BmgT120I GGNCC 5 cut(s) 74, 335, 462, 778, 824
BmiI GGNNCC 3 cut(s) 337, 536, 684
BmrFI CCNGG 4 cut(s) 164, 465, 494, 551
BmsI GCATC 3 cut(s) 102, 217, 1078
BpiI GAAGAC 3 cut(s) 633, 713, 899
Bpu10I CCTNAGC 1 cut(s) 665
Bpu14I TTCGAA 1 cut(s) 384
BpuEI CTTGAG 1 cut(s) 853
BpuMI CCSGG 1 cut(s) 465
Bsa29I ATCGAT 1 cut(s) 1080
BsaBI GATNNNNATC 1 cut(s) 738
BsaHI GRCGYC 1 cut(s) 857
BsaI GGTCTC 1 cut(s) 1411
BsaJI CCNNGG 5 cut(s) 492, 754, 851, 861, 965
BsaWI WCCGGW 1 cut(s) 449
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 346
Bse118I RCCGGY 2 cut(s) 449, 459
Bse1I ACTGG 1 cut(s) 411
Bse3DI GCAATG 1 cut(s) 612
Bse8I GATNNNNATC 1 cut(s) 738
BseBI CCWGG 3 cut(s) 164, 494, 551
BseCI ATCGAT 1 cut(s) 1080
BseDI CCNNGG 5 cut(s) 492, 754, 851, 861, 965
BseGI GGATG 4 cut(s) 239, 250, 1093, 1419
BseJI GATNNNNATC 1 cut(s) 738
BseLI CCNNNNNNNGG 2 cut(s) 169, 346
BseMI GCAATG 1 cut(s) 612
BseMII CTCAG 2 cut(s) 679, 1493
BseNI ACTGG 1 cut(s) 411
BseRI GAGGAG 4 cut(s) 741, 744, 893, 896
BseSI GKGCMC 2 cut(s) 992, 1039
BseX3I CGGCCG 1 cut(s) 962
BseXI GCAGC 4 cut(s) 18, 475, 771, 1126
BsgI GTGCAG 1 cut(s) 25
Bsh1285I CGRYCG 1 cut(s) 965
BshTI ACCGGT 1 cut(s) 449
BshVI ATCGAT 1 cut(s) 1080
BsiEI CGRYCG 1 cut(s) 965
BsiHKAI GWGCWC 2 cut(s) 432, 992
BsiSI CCGG 3 cut(s) 450, 460, 465
BslFI GGGAC 2 cut(s) 827, 1429
BslI CCNNNNNNNGG 2 cut(s) 169, 346
BsmAI GTCTC 2 cut(s) 1411, 1458
BsmFI GGGAC 2 cut(s) 827, 1429
Bso31I GGTCTC 1 cut(s) 1411
Bsp119I TTCGAA 1 cut(s) 384
Bsp1286I GDGCHC 3 cut(s) 432, 992, 1039
Bsp143I GATC 6 cut(s) 37, 480, 499, 958, 1344, 1512
BspACI CCGC 3 cut(s) 486, 497, 1247
BspCNI CTCAG 2 cut(s) 678, 1492
BspDI ATCGAT 1 cut(s) 1080
BspLI GGNNCC 3 cut(s) 337, 536, 684
BspPI GGATC 3 cut(s) 32, 507, 966
BspT104I TTCGAA 1 cut(s) 384
BspTNI GGTCTC 1 cut(s) 1411
BsrDI GCAATG 1 cut(s) 612
BsrFI RCCGGY 2 cut(s) 449, 459
BsrI ACTGG 1 cut(s) 411
BssAI RCCGGY 2 cut(s) 449, 459
BssECI CCNNGG 5 cut(s) 492, 754, 851, 861, 965
BssMI GATC 6 cut(s) 37, 480, 499, 958, 1344, 1512
BssNI GRCGYC 1 cut(s) 857
BssT1I CCWWGG 3 cut(s) 754, 851, 861
Bst2UI CCWGG 3 cut(s) 164, 494, 551
Bst4CI ACNGT 5 cut(s) 124, 643, 782, 898, 985
Bst6I CTCTTC 1 cut(s) 1352
BstACI GRCGYC 1 cut(s) 857
BstAPI GCANNNNNTGC 1 cut(s) 560
BstBI TTCGAA 1 cut(s) 384
BstC8I GCNNGC 6 cut(s) 428, 528, 547, 840, 844, 848
BstDEI CTNAG 3 cut(s) 665, 1132, 1479
BstF5I GGATG 4 cut(s) 239, 250, 1093, 1419
BstHHI GCGC 2 cut(s) 526, 1187
BstKTI GATC 6 cut(s) 40, 483, 502, 961, 1347, 1515
BstMAI GTCTC 2 cut(s) 1411, 1458
BstMBI GATC 6 cut(s) 37, 480, 499, 958, 1344, 1512
BstMCI CGRYCG 1 cut(s) 965
BstMWI GCNNNNNNNGC 7 cut(s) 494, 551, 560, 659, 856, 1265, 1292
BstNI CCWGG 3 cut(s) 164, 494, 551
BstNSI RCATGY 4 cut(s) 530, 558, 1006, 1471
BstSCI CCNGG 4 cut(s) 162, 463, 492, 549
BstSLI GKGCMC 2 cut(s) 992, 1039
BstV1I GCAGC 4 cut(s) 18, 475, 771, 1126
BstV2I GAAGAC 3 cut(s) 633, 713, 899
BstX2I RGATCY 2 cut(s) 480, 499
BstYI RGATCY 2 cut(s) 480, 499
BstZI CGGCCG 1 cut(s) 962
Bsu15I ATCGAT 1 cut(s) 1080
BsuTUI ATCGAT 1 cut(s) 1080
BtsCI GGATG 4 cut(s) 239, 250, 1093, 1419
BtsIMutI CAGTG 3 cut(s) 418, 903, 996
Cac8I GCNNGC 6 cut(s) 428, 528, 547, 840, 844, 848
CfoI GCGC 2 cut(s) 526, 1187
Cfr10I RCCGGY 2 cut(s) 449, 459
Cfr13I GGNCC 5 cut(s) 74, 335, 462, 778, 824
ClaI ATCGAT 1 cut(s) 1080
CseI GACGC 3 cut(s) 618, 865, 1139
Csp6I GTAC 5 cut(s) 324, 453, 768, 1098, 1498
CspAI ACCGGT 1 cut(s) 449
CspCI CAANNNNNGTGG 2 cut(s) 527, 562
CviQI GTAC 5 cut(s) 324, 453, 768, 1098, 1498
DdeI CTNAG 3 cut(s) 665, 1132, 1479
DpnI GATC 6 cut(s) 39, 482, 501, 960, 1346, 1514
DpnII GATC 6 cut(s) 37, 480, 499, 958, 1344, 1512
DrdI GACNNNNNNGTC 1 cut(s) 293
DseDI GACNNNNNNGTC 1 cut(s) 293
EaeI YGGCCR 2 cut(s) 348, 962
EagI CGGCCG 1 cut(s) 962
Eam1104I CTCTTC 1 cut(s) 1352
EarI CTCTTC 1 cut(s) 1352
EciI GGCGGA 1 cut(s) 512
EclXI CGGCCG 1 cut(s) 962
Eco130I CCWWGG 3 cut(s) 754, 851, 861
Eco147I AGGCCT 1 cut(s) 838
Eco31I GGTCTC 1 cut(s) 1411
Eco47I GGWCC 1 cut(s) 778
Eco52I CGGCCG 1 cut(s) 962
EcoO109I RGGNCCY 1 cut(s) 335
EcoRII CCWGG 3 cut(s) 162, 492, 549
EcoT14I CCWWGG 3 cut(s) 754, 851, 861
EcoT22I ATGCAT 2 cut(s) 95, 532
ErhI CCWWGG 3 cut(s) 754, 851, 861
FaqI GGGAC 2 cut(s) 827, 1429
FblI GTMKAC 1 cut(s) 1332
Fnu4HI GCNGC 4 cut(s) 7, 489, 760, 1140
FokI GGATG 4 cut(s) 246, 257, 1100, 1426
Fsp4HI GCNGC 4 cut(s) 7, 489, 760, 1140
FspBI CTAG 4 cut(s) 423, 1032, 1175, 1221
FspI TGCGCA 1 cut(s) 1186
GlaI GCGC 2 cut(s) 525, 1186
GluI GCNGC 4 cut(s) 7, 489, 760, 1140
HapII CCGG 3 cut(s) 450, 460, 465
HgaI GACGC 3 cut(s) 618, 865, 1139
HhaI GCGC 2 cut(s) 526, 1187
Hin1I GRCGYC 1 cut(s) 857
Hin6I GCGC 2 cut(s) 524, 1185
HinP1I GCGC 2 cut(s) 524, 1185
HincII GTYRAC 1 cut(s) 695
HindII GTYRAC 1 cut(s) 695
HinfI GANTC 2 cut(s) 886, 1349
HpaII CCGG 3 cut(s) 450, 460, 465
HphI GGTGA 5 cut(s) 190, 631, 743, 952, 1385
Hpy166II GTNNAC 7 cut(s) 145, 695, 778, 990, 1098, 1291, 1333
Hpy188I TCNGA 6 cut(s) 226, 478, 574, 891, 1213, 1482
Hpy188III TCNNGA 4 cut(s) 41, 1058, 1399, 1510
Hpy8I GTNNAC 7 cut(s) 145, 695, 778, 990, 1098, 1291, 1333
Hpy99I CGWCG 3 cut(s) 602, 612, 1155
HpyAV CCTTC 6 cut(s) 98, 146, 673, 1037, 1105, 1306
HpyCH4III ACNGT 5 cut(s) 124, 643, 782, 898, 985
HpyCH4IV ACGT 1 cut(s) 1302
HpyF10VI GCNNNNNNNGC 7 cut(s) 494, 551, 560, 659, 856, 1265, 1292
HpyF3I CTNAG 3 cut(s) 665, 1132, 1479
HpySE526I ACGT 1 cut(s) 1302
Hsp92I GRCGYC 1 cut(s) 857
HspAI GCGC 2 cut(s) 524, 1185
Kzo9I GATC 6 cut(s) 37, 480, 499, 958, 1344, 1512
LmnI GCTCC 1 cut(s) 534
Lsp1109I GCAGC 4 cut(s) 18, 475, 771, 1126
LweI GCATC 3 cut(s) 102, 217, 1078
MaeI CTAG 4 cut(s) 423, 1032, 1175, 1221
MaeII ACGT 1 cut(s) 1302
MaeIII GTNAC 3 cut(s) 212, 280, 940
MalI GATC 6 cut(s) 39, 482, 501, 960, 1346, 1514
MboI GATC 6 cut(s) 37, 480, 499, 958, 1344, 1512
MboII GAAGA 7 cut(s) 25, 125, 213, 638, 718, 904, 1369
MfeI CAATTG 1 cut(s) 688
MflI RGATCY 2 cut(s) 480, 499
MhlI GDGCHC 3 cut(s) 432, 992, 1039
MlsI TGGCCA 1 cut(s) 350
MluCI AATT 4 cut(s) 688, 1014, 1364, 1456
MluNI TGGCCA 1 cut(s) 350
MlyI GAGTC 2 cut(s) 895, 1358
MmeI TCCRAC 2 cut(s) 849, 869
Mox20I TGGCCA 1 cut(s) 350
Mph1103I ATGCAT 2 cut(s) 95, 532
MroXI GAANNNNTTC 1 cut(s) 156
MscI TGGCCA 1 cut(s) 350
MseI TTAA 1 cut(s) 300
MslI CAYNNNNRTG 5 cut(s) 411, 443, 1001, 1080, 1412
Msp20I TGGCCA 1 cut(s) 350
MspA1I CMGCKG 1 cut(s) 488
MspI CCGG 3 cut(s) 450, 460, 465
MspR9I CCNGG 4 cut(s) 164, 465, 494, 551
MunI CAATTG 1 cut(s) 688
MvaI CCWGG 3 cut(s) 164, 494, 551
MwoI GCNNNNNNNGC 7 cut(s) 494, 551, 560, 659, 856, 1265, 1292
NciI CCSGG 1 cut(s) 465
NdeII GATC 6 cut(s) 37, 480, 499, 958, 1344, 1512
NlaIV GGNNCC 3 cut(s) 337, 536, 684
NmeAIII GCCGAG 1 cut(s) 990
NmuCI GTSAC 1 cut(s) 940
NsbI TGCGCA 1 cut(s) 1186
NsiI ATGCAT 2 cut(s) 95, 532
NspI RCATGY 4 cut(s) 530, 558, 1006, 1471
NspV TTCGAA 1 cut(s) 384
OliI CACNNNNGTG 1 cut(s) 411
PaeI GCATGC 1 cut(s) 530
PceI AGGCCT 1 cut(s) 838
PcsI WCGNNNNNNNCGW 1 cut(s) 1299
PdmI GAANNNNTTC 1 cut(s) 156
PfoI TCCNGGA 1 cut(s) 162
PinAI ACCGGT 1 cut(s) 449
PkrI GCNGC 4 cut(s) 8, 490, 761, 1141
PleI GAGTC 2 cut(s) 894, 1357
PpsI GAGTC 2 cut(s) 894, 1357
Psp6I CCWGG 3 cut(s) 162, 492, 549
PspGI CCWGG 3 cut(s) 162, 492, 549
PspN4I GGNNCC 3 cut(s) 337, 536, 684
PspPI GGNCC 5 cut(s) 74, 335, 462, 778, 824
PsuI RGATCY 2 cut(s) 480, 499
RsaI GTAC 5 cut(s) 325, 454, 769, 1099, 1499
RsaNI GTAC 5 cut(s) 324, 453, 768, 1098, 1498
RseI CAYNNNNRTG 5 cut(s) 411, 443, 1001, 1080, 1412
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 4 cut(s) 7, 489, 760, 1140
Sau3AI GATC 6 cut(s) 37, 480, 499, 958, 1344, 1512
Sau96I GGNCC 5 cut(s) 74, 335, 462, 778, 824
ScaI AGTACT 1 cut(s) 769
SchI GAGTC 2 cut(s) 895, 1358
ScrFI CCNGG 4 cut(s) 164, 465, 494, 551
SduI GDGCHC 3 cut(s) 432, 992, 1039
SfaNI GCATC 3 cut(s) 102, 217, 1078
SfuI TTCGAA 1 cut(s) 384
SinI GGWCC 1 cut(s) 778
SmiMI CAYNNNNRTG 5 cut(s) 411, 443, 1001, 1080, 1412
SmlI CTYRAG 1 cut(s) 832
SmoI CTYRAG 1 cut(s) 832
SphI GCATGC 1 cut(s) 530
Sse9I AATT 4 cut(s) 688, 1014, 1364, 1456
SseBI AGGCCT 1 cut(s) 838
SsiI CCGC 3 cut(s) 486, 497, 1247
SspI AATATT 1 cut(s) 748
SspMI CTAG 4 cut(s) 423, 1032, 1175, 1221
StuI AGGCCT 1 cut(s) 838
StyD4I CCNGG 4 cut(s) 162, 463, 492, 549
StyI CCWWGG 3 cut(s) 754, 851, 861
TaaI ACNGT 5 cut(s) 124, 643, 782, 898, 985
TaiI ACGT 1 cut(s) 1305
TaqI TCGA 9 cut(s) 96, 384, 597, 948, 1072, 1080, 1255, 1347, 1352
TaqII GACCGA 1 cut(s) 1435
TasI AATT 4 cut(s) 688, 1014, 1364, 1456
TatI WGTACW 2 cut(s) 767, 1097
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 3 cut(s) 418, 903, 1003
TseFI GTSAC 1 cut(s) 940
TseI GCWGC 4 cut(s) 6, 488, 759, 1139
Tsp45I GTSAC 1 cut(s) 940
TspDTI ATGAA 6 cut(s) 26, 206, 229, 242, 279, 1370
TspGWI ACGGA 1 cut(s) 638
TspRI CASTG 3 cut(s) 418, 903, 1003
VneI GTGCAC 1 cut(s) 988
VpaK11BI GGWCC 1 cut(s) 778
XceI RCATGY 4 cut(s) 530, 558, 1006, 1471
XmiI GTMKAC 1 cut(s) 1332
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 4 cut(s) 423, 1032, 1175, 1221
ZrmI AGTACT 1 cut(s) 769
Zsp2I ATGCAT 2 cut(s) 95, 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.