Prupe.1G482900_v2.0.a1

ACT domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011257
Physical Location & Seq
Forward (+)
40276391 .. 40279772
3382 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G482900.1

Sequence Viewer

Length: 1476 bp
ATGAAGAAAATTTGTTGGCCTTACTTTGATCCCGAATTTGATAATCTCCCAGAGAGGATATATGGCCCTACGTGTAGAGTATGCATTGACAACGAAACCTTGGAAGATTGCACAATAGTAAAGGTGGATAGCGTGAACAAGCAAGGGCTTCTCCTCGAAGTGGTGCAAGTATTGACAGACGTGAACCTCACCATCACTAAAAGTTACATTTCTTCTGATGCAGGATGGTTCATGGATGTGTTCCATGTGAAAGATGAACACGGCAACAAACTTACAGACCAGAAAGTCATTAACTATATCCAGAAGGCCTTAAGTACAAGCACAGGCACCCCGGACTCAGCCAAGGCCTATACAAATAACAACCCTACTTTATTCTCACCCACAAACCCTACCGACCACACCACCATCGAAATGACCGGAACAGACCGGCCCGGTCTGTTCTCCGAGATCTCCGCTGCCCTAGCTGCCCTCCATTGCAACATAGTAGAAGCCCATGCATGGAGCCATAACGCCCGCCTTGCCTGTGTAGCTCAAATTTCGGACCAATCAACAGACCACAACCCGCGCCGCCTCGCAACCATCGAGGACCACCTCATCACCGTCCTCCGTGCCACAACCGCCCTCAGCCCGTGCGGGAAGGAACCCAATAATGGCCAACAAGAAGTAAAGACCATAGGGCTCTTGGGATCAGGAGATCATAATTATGTTCATCAAGGAACCATGAGCACCAATGTAGAGAGGAGGTTGCACCAGCTCATGCTTTCTGTCAGGGACTTTGATGGGCCCAATGATGGGCACGAAAGCTCGCCTAGGACGCCGTTGGGGTTGTACAGTGAGGTGGAGGGGAGGAAGACGGTGGTTTGGATTGAGAGCTGTGAGGAAAAGGGGTATTCTATGGTGAGTATTGAGTGTAAGGATCGGCGGAAGCTCATGTTTGATACTGTGTGCACTCTCACTGACATGCAGTATGTGATCTTCCATGCTTCTGCAAGTGGCCAAGACGGTTATGCCTTTCAGGAGTATTTTATCCGACATATCGACGGGGATGCCTTGTGTACTCAGAGTGAGAAAGAAAGAGTTATAAAATGCTTAGAGGCTGCTATAGAGCGTCGGGTTTCTGAGGGGATTAGGCTAGAACTGTGTGCAGATGATAGGATAGGGTTACTCTCTGATATAACTAGGGTTCTACGAGAGAATGGGCTTGTCGTTGTTCGAGCAGATGTAGCAACTCAAGGAGAAAAGTCCATAAACGCCTTCTATGTGAGAGACATTTCAGGAAATGAAGTAGTAGACATGGACATTGTTGAGTCGATGAAAAGGGAATTAATGGGTTCAAATCCAATATACGTTCAAGTCAAGAATGACACACGGATCAGACCAAGCTCACCTGAAAGGTCGTCTCCTCTCTCTAATTTTGGAGACATGCTGAAATCTCAACTTGAGCGTTTGTCTAACAATTTTGCTAAGATCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ACT ACT_6

Protein Analysis

492

Amino Acids

54.95

Weight (kDa)

5.4

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25320 AT5G25320 AT5G25320
fragaria_vesca FvH4_2g28840 FvH4_2g28840 FvH4_2g28840 FvH4_2g28840 FvH4_2g28840
malus_domestica MD08G1156600.v1.1 MD15G1127200.v1.1
prunus_persica Prupe.1G482900_v2.0.a1
pyrus_communis pycom08g12880
rosa_chinensis RchiOBHm_Chr6g0297601
rosa_laevigata RLG00000011578
rosa_rugosa Rorug06G0274200
rosa_samantha Rh6AG385000 Rh6BG393100 Rh6CG398900 Rh6DG385500
rosa_wichuraiana Rw6G033540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1082
AasI GACNNNNNNGTC 1 cut(s) 284
AccB1I GGYRCC 1 cut(s) 326
AccI GTMKAC 1 cut(s) 1290
AccII CGCG 1 cut(s) 565
AciI CCGC 7 cut(s) 453, 514, 563, 568, 618, 633, 922
AclWI GGATC 4 cut(s) 23, 694, 924, 1379
AcoI YGGCCR 2 cut(s) 652, 994
AcsI RAATTY 3 cut(s) 9, 35, 534
AcyI GRCGYC 1 cut(s) 815
AfaI GTAC 3 cut(s) 316, 830, 1057
AfiI CCNNNNNNNGG 5 cut(s) 160, 498, 650, 791, 792
AflII CTTAAG 1 cut(s) 310
AflIII ACRYGT 1 cut(s) 71
AgsI TTSAA 2 cut(s) 1335, 1352
AjiI CACGTC 1 cut(s) 181
AluBI AGCT 7 cut(s) 464, 530, 754, 804, 873, 928, 1383
AluI AGCT 7 cut(s) 464, 530, 754, 804, 873, 928, 1383
Alw21I GWGCWC 2 cut(s) 728, 950
Alw26I GTCTC 3 cut(s) 1260, 1404, 1413
Alw44I GTGCAC 1 cut(s) 946
AlwI GGATC 4 cut(s) 23, 694, 924, 1379
AoxI GGCC 8 cut(s) 17, 64, 306, 345, 428, 652, 782, 994
ApaI GGGCCC 1 cut(s) 786
ApaLI GTGCAC 1 cut(s) 946
ApeKI GCWGC 3 cut(s) 455, 464, 1097
ApoI RAATTY 3 cut(s) 9, 35, 534
AseI ATTAAT 1 cut(s) 1325
AspA2I CCTAGG 1 cut(s) 809
AspLEI GCGC 1 cut(s) 567
AspS9I GGNCC 6 cut(s) 65, 429, 541, 586, 782, 783
AsuC2I CCSGG 2 cut(s) 332, 432
AsuHPI GGTGA 5 cut(s) 181, 369, 589, 910, 1377
AvaII GGWCC 2 cut(s) 541, 586
AvrII CCTAGG 1 cut(s) 809
BaeGI GKGCMC 3 cut(s) 786, 798, 950
BalI TGGCCA 2 cut(s) 654, 996
BanI GGYRCC 1 cut(s) 326
BanII GRGCYC 2 cut(s) 681, 786
BarI GAAGNNNNNNTAC 2 cut(s) 959, 991
BbsI GAAGAC 1 cut(s) 857
Bbv12I GWGCWC 2 cut(s) 728, 950
BbvCI CCTCAGC 1 cut(s) 623
BbvI GCAGC 3 cut(s) 442, 451, 1084
BccI CCATC 6 cut(s) 200, 219, 413, 587, 773, 785
BceAI ACGGC 2 cut(s) 277, 802
BcgI CGANNNNNNTGC 2 cut(s) 1028, 1062
BcnI CCSGG 2 cut(s) 332, 432
BcoDI GTCTC 3 cut(s) 1260, 1404, 1413
BfaI CTAG 4 cut(s) 461, 810, 1133, 1179
BfmI CTRYAG 1 cut(s) 1101
BfrI CTTAAG 1 cut(s) 310
BglII AGATCT 1 cut(s) 447
BisI GCNGC 4 cut(s) 456, 465, 568, 1098
BlnI CCTAGG 1 cut(s) 809
BlsI GCNGC 4 cut(s) 457, 466, 569, 1099
Bme1390I CCNGG 2 cut(s) 332, 432
Bme18I GGWCC 2 cut(s) 541, 586
BmgBI CACGTC 1 cut(s) 181
BmgT120I GGNCC 6 cut(s) 65, 429, 541, 586, 782, 783
BmiI GGNNCC 5 cut(s) 328, 503, 642, 718, 784
BmrFI CCNGG 2 cut(s) 332, 432
BmsI GCATC 2 cut(s) 208, 1036
BpiI GAAGAC 1 cut(s) 857
Bpu10I CCTNAGC 1 cut(s) 623
BpuEI CTTGAG 2 cut(s) 1215, 1460
BpuMI CCSGG 2 cut(s) 332, 432
BsaAI YACGTR 1 cut(s) 72
BsaHI GRCGYC 1 cut(s) 815
BsaJI CCNNGG 4 cut(s) 99, 330, 342, 809
BsaWI WCCGGW 1 cut(s) 416
Bsc4I CCNNNNNNNGG 5 cut(s) 160, 498, 650, 791, 792
Bse118I RCCGGY 1 cut(s) 426
Bse3DI GCAATG 1 cut(s) 472
BseDI CCNNGG 4 cut(s) 99, 330, 342, 809
BseGI GGATG 3 cut(s) 230, 241, 1051
BseLI CCNNNNNNNGG 5 cut(s) 160, 498, 650, 791, 792
BseMI GCAATG 1 cut(s) 472
BseMII CTCAG 4 cut(s) 351, 637, 1073, 1110
BseRI GAGGAG 3 cut(s) 143, 754, 1392
BseSI GKGCMC 3 cut(s) 786, 798, 950
BseXI GCAGC 3 cut(s) 442, 451, 1084
BsgI GTGCAG 1 cut(s) 1164
Bsh1236I CGCG 1 cut(s) 565
BshFI GGCC 8 cut(s) 19, 66, 308, 347, 430, 654, 784, 996
BshNI GGYRCC 1 cut(s) 326
BsiHKAI GWGCWC 2 cut(s) 728, 950
BsiSI CCGG 4 cut(s) 332, 417, 427, 432
BslFI GGGAC 1 cut(s) 785
BslI CCNNNNNNNGG 5 cut(s) 160, 498, 650, 791, 792
BsmAI GTCTC 3 cut(s) 1260, 1404, 1413
BsmBI CGTCTC 1 cut(s) 1404
BsmFI GGGAC 1 cut(s) 785
BsnI GGCC 8 cut(s) 19, 66, 308, 347, 430, 654, 784, 996
Bsp120I GGGCCC 1 cut(s) 782
Bsp1286I GDGCHC 5 cut(s) 681, 728, 786, 798, 950
Bsp1407I TGTACA 1 cut(s) 828
Bsp143I GATC 8 cut(s) 28, 447, 686, 694, 916, 972, 1371, 1467
BspACI CCGC 7 cut(s) 453, 514, 563, 568, 618, 633, 922
BspANI GGCC 8 cut(s) 19, 66, 308, 347, 430, 654, 784, 996
BspCNI CTCAG 4 cut(s) 350, 636, 1072, 1111
BspFNI CGCG 1 cut(s) 565
BspLI GGNNCC 5 cut(s) 328, 503, 642, 718, 784
BspPI GGATC 4 cut(s) 23, 694, 924, 1379
BspT107I GGYRCC 1 cut(s) 326
BspTI CTTAAG 1 cut(s) 310
BsrDI GCAATG 1 cut(s) 472
BsrFI RCCGGY 1 cut(s) 426
BsrGI TGTACA 1 cut(s) 828
BssAI RCCGGY 1 cut(s) 426
BssECI CCNNGG 4 cut(s) 99, 330, 342, 809
BssMI GATC 8 cut(s) 28, 447, 686, 694, 916, 972, 1371, 1467
BssNI GRCGYC 1 cut(s) 815
BssT1I CCWWGG 3 cut(s) 99, 342, 809
Bst4CI ACNGT 6 cut(s) 601, 833, 856, 943, 1004, 1140
BstACI GRCGYC 1 cut(s) 815
BstAFI CTTAAG 1 cut(s) 310
BstAUI TGTACA 1 cut(s) 828
BstBAI YACGTR 1 cut(s) 72
BstC8I GCNNGC 2 cut(s) 514, 806
BstDEI CTNAG 6 cut(s) 337, 623, 1059, 1090, 1119, 1464
BstF5I GGATG 3 cut(s) 230, 241, 1051
BstFNI CGCG 1 cut(s) 565
BstHHI GCGC 1 cut(s) 567
BstKTI GATC 8 cut(s) 31, 450, 689, 697, 919, 975, 1374, 1470
BstMAI GTCTC 3 cut(s) 1260, 1404, 1413
BstMBI GATC 8 cut(s) 28, 447, 686, 694, 916, 972, 1371, 1467
BstMWI GCNNNNNNNGC 7 cut(s) 461, 464, 518, 527, 617, 814, 1223
BstNSI RCATGY 2 cut(s) 964, 1426
BstSCI CCNGG 2 cut(s) 330, 430
BstSFI CTRYAG 1 cut(s) 1101
BstSLI GKGCMC 3 cut(s) 786, 798, 950
BstUI CGCG 1 cut(s) 565
BstV1I GCAGC 3 cut(s) 442, 451, 1084
BstV2I GAAGAC 1 cut(s) 857
BstX2I RGATCY 1 cut(s) 447
BstYI RGATCY 1 cut(s) 447
BsuRI GGCC 8 cut(s) 19, 66, 308, 347, 430, 654, 784, 996
BtrI CACGTC 1 cut(s) 181
BtsCI GGATG 3 cut(s) 230, 241, 1051
BtsIMutI CAGTG 2 cut(s) 838, 954
Cac8I GCNNGC 2 cut(s) 514, 806
CfoI GCGC 1 cut(s) 567
Cfr10I RCCGGY 1 cut(s) 426
Cfr13I GGNCC 6 cut(s) 65, 429, 541, 586, 782, 783
CseI GACGC 2 cut(s) 823, 1097
Csp6I GTAC 3 cut(s) 315, 829, 1056
CviQI GTAC 3 cut(s) 315, 829, 1056
DdeI CTNAG 6 cut(s) 337, 623, 1059, 1090, 1119, 1464
DpnI GATC 8 cut(s) 30, 449, 688, 696, 918, 974, 1373, 1469
DpnII GATC 8 cut(s) 28, 447, 686, 694, 916, 972, 1371, 1467
DrdI GACNNNNNNGTC 1 cut(s) 284
DseDI GACNNNNNNGTC 1 cut(s) 284
EaeI YGGCCR 2 cut(s) 652, 994
EciI GGCGGA 1 cut(s) 937
Eco130I CCWWGG 3 cut(s) 99, 342, 809
Eco147I AGGCCT 2 cut(s) 308, 347
Eco24I GRGCYC 2 cut(s) 681, 786
Eco47I GGWCC 2 cut(s) 541, 586
EcoT14I CCWWGG 3 cut(s) 99, 342, 809
EcoT22I ATGCAT 2 cut(s) 86, 499
EcoT38I GRGCYC 2 cut(s) 681, 786
ErhI CCWWGG 3 cut(s) 99, 342, 809
Esp3I CGTCTC 1 cut(s) 1404
FaqI GGGAC 1 cut(s) 785
FauI CCCGC 3 cut(s) 521, 570, 626
FblI GTMKAC 1 cut(s) 1290
Fnu4HI GCNGC 4 cut(s) 456, 465, 568, 1098
FokI GGATG 3 cut(s) 237, 248, 1058
FriOI GRGCYC 2 cut(s) 681, 786
Fsp4HI GCNGC 4 cut(s) 456, 465, 568, 1098
FspBI CTAG 4 cut(s) 461, 810, 1133, 1179
GlaI GCGC 1 cut(s) 566
GluI GCNGC 4 cut(s) 456, 465, 568, 1098
HaeIII GGCC 8 cut(s) 19, 66, 308, 347, 430, 654, 784, 996
HapII CCGG 4 cut(s) 332, 417, 427, 432
HgaI GACGC 2 cut(s) 823, 1097
HhaI GCGC 1 cut(s) 567
Hin1I GRCGYC 1 cut(s) 815
Hin6I GCGC 1 cut(s) 565
HinP1I GCGC 1 cut(s) 565
HinfI GANTC 2 cut(s) 335, 1307
HpaII CCGG 4 cut(s) 332, 417, 427, 432
HphI GGTGA 5 cut(s) 181, 369, 589, 910, 1377
Hpy166II GTNNAC 5 cut(s) 136, 184, 948, 1056, 1291
Hpy188I TCNGA 8 cut(s) 217, 445, 541, 1031, 1062, 1120, 1171, 1376
Hpy188III TCNNGA 6 cut(s) 32, 301, 690, 1016, 1275, 1357
Hpy8I GTNNAC 5 cut(s) 136, 184, 948, 1056, 1291
Hpy99I CGWCG 2 cut(s) 1043, 1113
HpyAV CCTTC 3 cut(s) 298, 631, 1264
HpyCH4III ACNGT 6 cut(s) 601, 833, 856, 943, 1004, 1140
HpyCH4IV ACGT 3 cut(s) 71, 180, 1347
HpyF10VI GCNNNNNNNGC 7 cut(s) 461, 464, 518, 527, 617, 814, 1223
HpyF3I CTNAG 6 cut(s) 337, 623, 1059, 1090, 1119, 1464
HpySE526I ACGT 3 cut(s) 71, 180, 1347
Hsp92I GRCGYC 1 cut(s) 815
HspAI GCGC 1 cut(s) 565
Kzo9I GATC 8 cut(s) 28, 447, 686, 694, 916, 972, 1371, 1467
LmnI GCTCC 1 cut(s) 501
Lsp1109I GCAGC 3 cut(s) 442, 451, 1084
LweI GCATC 2 cut(s) 208, 1036
MaeI CTAG 4 cut(s) 461, 810, 1133, 1179
MaeII ACGT 3 cut(s) 71, 180, 1347
MaeIII GTNAC 2 cut(s) 203, 1161
MalI GATC 8 cut(s) 30, 449, 688, 696, 918, 974, 1373, 1469
MboI GATC 8 cut(s) 28, 447, 686, 694, 916, 972, 1371, 1467
MboII GAAGA 5 cut(s) 16, 116, 204, 862, 967
MflI RGATCY 1 cut(s) 447
MhlI GDGCHC 5 cut(s) 681, 728, 786, 798, 950
MlsI TGGCCA 2 cut(s) 654, 996
MluCI AATT 7 cut(s) 9, 35, 534, 700, 1322, 1411, 1456
MluNI TGGCCA 2 cut(s) 654, 996
MlyI GAGTC 2 cut(s) 329, 1316
MmeI TCCRAC 1 cut(s) 1054
Mox20I TGGCCA 2 cut(s) 654, 996
Mph1103I ATGCAT 2 cut(s) 86, 499
MscI TGGCCA 2 cut(s) 654, 996
MseI TTAA 3 cut(s) 291, 311, 1325
MslI CAYNNNNRTG 4 cut(s) 236, 410, 702, 959
Msp20I TGGCCA 2 cut(s) 654, 996
MspA1I CMGCKG 1 cut(s) 455
MspCI CTTAAG 1 cut(s) 310
MspI CCGG 4 cut(s) 332, 417, 427, 432
MspR9I CCNGG 2 cut(s) 332, 432
MvnI CGCG 1 cut(s) 565
MwoI GCNNNNNNNGC 7 cut(s) 461, 464, 518, 527, 617, 814, 1223
NciI CCSGG 2 cut(s) 332, 432
NdeII GATC 8 cut(s) 28, 447, 686, 694, 916, 972, 1371, 1467
NlaIV GGNNCC 5 cut(s) 328, 503, 642, 718, 784
NsiI ATGCAT 2 cut(s) 86, 499
NspI RCATGY 2 cut(s) 964, 1426
PceI AGGCCT 2 cut(s) 308, 347
PcsI WCGNNNNNNNCGW 1 cut(s) 579
PkrI GCNGC 4 cut(s) 457, 466, 569, 1099
PleI GAGTC 2 cut(s) 329, 1315
PpsI GAGTC 2 cut(s) 329, 1315
Ppu21I YACGTR 1 cut(s) 72
PshBI ATTAAT 1 cut(s) 1325
PsiI TTATAA 1 cut(s) 1082
PspN4I GGNNCC 5 cut(s) 328, 503, 642, 718, 784
PspOMI GGGCCC 1 cut(s) 782
PspPI GGNCC 6 cut(s) 65, 429, 541, 586, 782, 783
PsuI RGATCY 1 cut(s) 447
RsaI GTAC 3 cut(s) 316, 830, 1057
RsaNI GTAC 3 cut(s) 315, 829, 1056
RseI CAYNNNNRTG 4 cut(s) 236, 410, 702, 959
SaqAI TTAA 3 cut(s) 291, 311, 1325
SatI GCNGC 4 cut(s) 456, 465, 568, 1098
Sau3AI GATC 8 cut(s) 28, 447, 686, 694, 916, 972, 1371, 1467
Sau96I GGNCC 6 cut(s) 65, 429, 541, 586, 782, 783
SchI GAGTC 2 cut(s) 329, 1316
ScrFI CCNGG 2 cut(s) 332, 432
SduI GDGCHC 5 cut(s) 681, 728, 786, 798, 950
SfaNI GCATC 2 cut(s) 208, 1036
SfcI CTRYAG 1 cut(s) 1101
SinI GGWCC 2 cut(s) 541, 586
SmiMI CAYNNNNRTG 4 cut(s) 236, 410, 702, 959
SmlI CTYRAG 3 cut(s) 310, 1230, 1439
SmoI CTYRAG 3 cut(s) 310, 1230, 1439
Sse9I AATT 7 cut(s) 9, 35, 534, 700, 1322, 1411, 1456
SseBI AGGCCT 2 cut(s) 308, 347
SsiI CCGC 7 cut(s) 453, 514, 563, 568, 618, 633, 922
SspMI CTAG 4 cut(s) 461, 810, 1133, 1179
StuI AGGCCT 2 cut(s) 308, 347
StyD4I CCNGG 2 cut(s) 330, 430
StyI CCWWGG 3 cut(s) 99, 342, 809
TaaI ACNGT 6 cut(s) 601, 833, 856, 943, 1004, 1140
TaiI ACGT 3 cut(s) 74, 183, 1350
TaqI TCGA 6 cut(s) 156, 408, 582, 1038, 1213, 1310
TasI AATT 7 cut(s) 9, 35, 534, 700, 1322, 1411, 1456
TatI WGTACW 3 cut(s) 314, 828, 1055
TauI GCSGC 1 cut(s) 570
Tru1I TTAA 3 cut(s) 291, 311, 1325
Tru9I TTAA 3 cut(s) 291, 311, 1325
TscAI CASTG 2 cut(s) 838, 961
TseI GCWGC 3 cut(s) 455, 464, 1097
TspDTI ATGAA 6 cut(s) 17, 220, 270, 698, 1296, 1328
TspGWI ACGGA 2 cut(s) 596, 1384
TspRI CASTG 2 cut(s) 838, 961
Vha464I CTTAAG 1 cut(s) 310
VneI GTGCAC 1 cut(s) 946
VpaK11BI GGWCC 2 cut(s) 541, 586
VspI ATTAAT 1 cut(s) 1325
XapI RAATTY 3 cut(s) 9, 35, 534
XceI RCATGY 2 cut(s) 964, 1426
XcmI CCANNNNNNNNNTGG 1 cut(s) 679
XmaJI CCTAGG 1 cut(s) 809
XmiI GTMKAC 1 cut(s) 1290
XspI CTAG 4 cut(s) 461, 810, 1133, 1179
Zsp2I ATGCAT 2 cut(s) 86, 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.