Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0008441

Physical Location & Seq

Genomic Coordinates Reverse (-)

26366621 .. 26370587

Gene Structure 3967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1203900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGTGTTTGACGGAGACTCTGGACGAGATGGTTCAGAGCGGGACTCTCAGTCCCGACCTCGCTATTCAAGTTCTCACTCAGTTCGACAAGTCGATGACTGAAGCCCTTGAAACCCAAGTGAAGAGCAAGGTCACTATCAAGGGACATTTGCACACCTATAGATTCTGCGACAACGTTTGGACCTTCATCTTACAGGATGCTTTGTTCAAGAACGAGGATAGCCAGGAAAACGTTGGCCGTGTTAAAATAGTGGCATGTGACTCAAAGCTGCTGACACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005672 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016591 GO:0017025 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051090 GO:0051091 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05203 map03022 map05203

Pfam Domains

Protein Families

TFIIA_gamma_C TFIIA_gamma_N

Protein Analysis

94

Amino Acids

10.54

Weight (kDa)

4.97

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIIA_gamma_N	PF02268	1 - 36	7.7e-14	Transcription initiation factor IIA, gamma subunit, helical domain
TFIIA_gamma_C	PF02751	47 - 88	4.9e-22	Transcription initiation factor IIA, gamma subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24440 AT4G24440
fragaria_vesca	FvH4_5g34180
malus_domestica	MD08G1203900.v1.1
prunus_persica	Prupe.1G536300_v2.0.a1
pyrus_communis	pycom08g17590
rosa_chinensis	RchiOBHm_Chr5g0012851 RchiOBHm_Chr7g0233761
rosa_laevigata	RLG00000001236 RLG00000031961
rosa_multiflora	Rmu_sc0002365.1_g000032
rosa_roxburghii	Rroxscaffold_1G00063750 Rroxscaffold_3G00227010
rosa_rugosa	Rorug07G0282500 Rorug07G0282600
rosa_samantha	Rh5AG098600 Rh5CG107500 Rh7BG128400 Rh7BG411500
rosa_wichuraiana	Rw1G012030 Rw5G008620 Rw7G028720 Rw7G036250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	39
AciI	CCGC	1 cut(s)	39
AclI	AACGTT	2 cut(s)	174, 231
AcoI	YGGCCR	1 cut(s)	235
AcuI	CTGAAG	1 cut(s)	120
AgsI	TTSAA	3 cut(s)	68, 110, 208
AhdI	GACNNNNNGTC	1 cut(s)	48
AjnI	CCWGG	1 cut(s)	222
AloI	GAACNNNNNNTCC	2 cut(s)	188, 220
AluBI	AGCT	1 cut(s)	268
AluI	AGCT	1 cut(s)	268
Alw26I	GTCTC	1 cut(s)	8
AoxI	GGCC	1 cut(s)	235
ApeKI	GCWGC	1 cut(s)	268
AspS9I	GGNCC	1 cut(s)	180
AvaII	GGWCC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	255
BccI	CCATC	1 cut(s)	22
BceAI	ACGGC	1 cut(s)	222
BciT130I	CCWGG	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	8
BfmI	CTRYAG	1 cut(s)	157
BisI	GCNGC	1 cut(s)	269
BlsI	GCNGC	1 cut(s)	270
Bme1390I	CCNGG	1 cut(s)	224
Bme18I	GGWCC	1 cut(s)	180
BmeRI	GACNNNNNGTC	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	180
BmrFI	CCNGG	1 cut(s)	224
BmsI	GCATC	1 cut(s)	187
BplI	GAGNNNNNCTC	2 cut(s)	28, 60
BseBI	CCWGG	1 cut(s)	224
BseGI	GGATG	1 cut(s)	202
BseMII	CTCAG	2 cut(s)	61, 92
BseXI	GCAGC	1 cut(s)	255
BshFI	GGCC	1 cut(s)	237
BslFI	GGGAC	3 cut(s)	36, 55, 156
BsmAI	GTCTC	1 cut(s)	8
BsmFI	GGGAC	3 cut(s)	36, 55, 156
BsnI	GGCC	1 cut(s)	237
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	1 cut(s)	237
BspCNI	CTCAG	2 cut(s)	60, 91
BspQI	GCTCTTC	1 cut(s)	116
BsrBI	CCGCTC	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	224
Bst6I	CTCTTC	1 cut(s)	116
BstDEI	CTNAG	2 cut(s)	47, 78
BstF5I	GGATG	1 cut(s)	202
BstMAI	GTCTC	1 cut(s)	8
BstNI	CCWGG	1 cut(s)	224
BstNSI	RCATGY	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	222
BstSFI	CTRYAG	1 cut(s)	157
BstV1I	GCAGC	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	202
Cfr13I	GGNCC	1 cut(s)	180
CviAII	CATG	1 cut(s)	255
CviJI	RGCY	4 cut(s)	104, 222, 237, 268
CviKI_1	RGCY	4 cut(s)	104, 222, 237, 268
DdeI	CTNAG	2 cut(s)	47, 78
DriI	GACNNNNNGTC	1 cut(s)	48
EaeI	YGGCCR	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	116
Eam1105I	GACNNNNNGTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	222
FaeI	CATG	1 cut(s)	258
FaiI	YATR	2 cut(s)	159, 256
FaqI	GGGAC	3 cut(s)	36, 55, 156
FatI	CATG	1 cut(s)	254
FauI	CCCGC	1 cut(s)	32
Fnu4HI	GCNGC	1 cut(s)	269
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	1 cut(s)	269
GluI	GCNGC	1 cut(s)	269
HaeIII	GGCC	1 cut(s)	237
Hin1II	CATG	1 cut(s)	258
HinfI	GANTC	4 cut(s)	16, 43, 162, 260
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	3 cut(s)	20, 53, 208
HpyAV	CCTTC	1 cut(s)	193
HpyCH4IV	ACGT	2 cut(s)	174, 231
HpyCH4V	TGCA	1 cut(s)	151
HpyF3I	CTNAG	2 cut(s)	47, 78
HpySE526I	ACGT	2 cut(s)	174, 231
Hsp92II	CATG	1 cut(s)	258
LguI	GCTCTTC	1 cut(s)	116
LpnPI	CCDG	4 cut(s)	5, 179, 209, 236
Lsp1109I	GCAGC	1 cut(s)	255
LweI	GCATC	1 cut(s)	187
MaeII	ACGT	2 cut(s)	174, 231
MaeIII	GTNAC	2 cut(s)	130, 257
MbiI	CCGCTC	1 cut(s)	39
MboII	GAAGA	1 cut(s)	133
MlyI	GAGTC	3 cut(s)	10, 37, 254
MnlI	CCTC	2 cut(s)	68, 208
MseI	TTAA	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	224
NlaIII	CATG	1 cut(s)	258
NmuCI	GTSAC	2 cut(s)	130, 257
NspI	RCATGY	1 cut(s)	258
PciSI	GCTCTTC	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	162
PkrI	GCNGC	1 cut(s)	270
PleI	GAGTC	3 cut(s)	10, 37, 254
PpsI	GAGTC	3 cut(s)	10, 37, 254
Psp1406I	AACGTT	2 cut(s)	174, 231
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	1 cut(s)	269
Sau96I	GGNCC	1 cut(s)	180
SchI	GAGTC	3 cut(s)	10, 37, 254
ScrFI	CCNGG	1 cut(s)	224
SetI	ASST	7 cut(s)	60, 132, 158, 177, 185, 234, 270
SfaNI	GCATC	1 cut(s)	187
SfcI	CTRYAG	1 cut(s)	157
SinI	GGWCC	1 cut(s)	180
SsiI	CCGC	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	222
TaiI	ACGT	2 cut(s)	177, 234
TaqI	TCGA	2 cut(s)	84, 92
TfiI	GAWTC	1 cut(s)	162
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TseFI	GTSAC	2 cut(s)	130, 257
TseI	GCWGC	1 cut(s)	268
Tsp45I	GTSAC	2 cut(s)	130, 257
TspDTI	ATGAA	1 cut(s)	175
TspGWI	ACGGA	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	180
XceI	RCATGY	1 cut(s)	258
XcmI	CCANNNNNNNNNTGG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.