Prupe.1G536300_v2.0.a1

TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0008441
Physical Location & Seq
Reverse (-)
43822257 .. 43826056
3800 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G536300.1

Sequence Viewer

Length: 321 bp
ATGGCGACGTTTGAGCTCTACAGGAGGTCGACGATCGGAATGTGTTTGACTGAGACTTTGGATGAGATGGTTCAGAACGGTACTCTCAGTCCCGAGCTCGCCATTCAGGTTCTCGTTCAGTTCGACAAGTCAATGACTGAAGCTTTGGAAACCCAAGTGAAGAGCAAGGTCAGCATCAAGGGACATCTGCACACCTACAGATTCTGCGACAATGTTTGGACCTTCATCTTACAGGACGCTTTGTTCAAGAACGAGGATAGCCAGGAAACTGTTGGCCGTGTTAAAATAGTGGCATGTGACTCAAAGCTGCTCACACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0003674 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005672 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016591 GO:0017025 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051090 GO:0051091 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05203 map03022 map05203
Pfam Domains
Protein Families
TFIIA_gamma_C TFIIA_gamma_N

Protein Analysis

107

Amino Acids

12.08

Weight (kDa)

5.29

Isoelectric Point (pI)

39.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 29
AcoI YGGCCR 1 cut(s) 274
AcuI CTGAAG 1 cut(s) 159
AfaI GTAC 1 cut(s) 82
AgsI TTSAA 1 cut(s) 247
AjnI CCWGG 1 cut(s) 261
AloI GAACNNNNNNTCC 2 cut(s) 227, 259
AluBI AGCT 4 cut(s) 16, 97, 143, 307
AluI AGCT 4 cut(s) 16, 97, 143, 307
Alw21I GWGCWC 2 cut(s) 18, 99
Alw26I GTCTC 1 cut(s) 47
AlwNI CAGNNNCTG 1 cut(s) 204
Ama87I CYCGRG 1 cut(s) 92
AoxI GGCC 1 cut(s) 274
ApeKI GCWGC 1 cut(s) 307
ArsI GACNNNNNNTTYG 4 cut(s) 40, 72, 127, 159
AspS9I GGNCC 1 cut(s) 219
AvaI CYCGRG 1 cut(s) 92
AvaII GGWCC 1 cut(s) 219
BanII GRGCYC 2 cut(s) 18, 99
Bbv12I GWGCWC 2 cut(s) 18, 99
BbvI GCAGC 1 cut(s) 294
BccI CCATC 1 cut(s) 61
BceAI ACGGC 1 cut(s) 261
BciT130I CCWGG 1 cut(s) 263
BcoDI GTCTC 1 cut(s) 47
BfmI CTRYAG 2 cut(s) 19, 196
BisI GCNGC 1 cut(s) 308
BlsI GCNGC 1 cut(s) 309
Bme1390I CCNGG 1 cut(s) 263
Bme18I GGWCC 1 cut(s) 219
BmeT110I CYCGRG 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 219
BmrFI CCNGG 1 cut(s) 263
BmsI GCATC 1 cut(s) 183
BseBI CCWGG 1 cut(s) 263
BseGI GGATG 1 cut(s) 67
BseMII CTCAG 2 cut(s) 42, 100
BseXI GCAGC 1 cut(s) 294
BsgI GTGCAG 1 cut(s) 173
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 1 cut(s) 276
BsiEI CGRYCG 1 cut(s) 36
BsiHKAI GWGCWC 2 cut(s) 18, 99
BsiHKCI CYCGRG 1 cut(s) 92
BslFI GGGAC 2 cut(s) 75, 195
BsmAI GTCTC 1 cut(s) 47
BsmFI GGGAC 2 cut(s) 75, 195
BsnI GGCC 1 cut(s) 276
BsoBI CYCGRG 1 cut(s) 92
Bsp1286I GDGCHC 2 cut(s) 18, 99
Bsp143I GATC 1 cut(s) 33
BspANI GGCC 1 cut(s) 276
BspCNI CTCAG 2 cut(s) 43, 99
BspQI GCTCTTC 1 cut(s) 155
BssMI GATC 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 263
Bst4CI ACNGT 2 cut(s) 80, 271
Bst6I CTCTTC 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 2 cut(s) 51, 86
BstF5I GGATG 1 cut(s) 67
BstKTI GATC 1 cut(s) 36
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 1 cut(s) 33
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 1 cut(s) 171
BstNI CCWGG 1 cut(s) 263
BstNSI RCATGY 1 cut(s) 297
BstSCI CCNGG 1 cut(s) 261
BstSFI CTRYAG 2 cut(s) 19, 196
BstV1I GCAGC 1 cut(s) 294
BsuRI GGCC 1 cut(s) 276
BtsCI GGATG 1 cut(s) 67
Cac8I GCNNGC 1 cut(s) 99
CaiI CAGNNNCTG 1 cut(s) 204
Cfr13I GGNCC 1 cut(s) 219
CseI GACGC 1 cut(s) 245
Csp6I GTAC 1 cut(s) 81
CviAII CATG 1 cut(s) 294
CviJI RGCY 6 cut(s) 16, 97, 143, 261, 276, 307
CviKI_1 RGCY 6 cut(s) 16, 97, 143, 261, 276, 307
CviQI GTAC 1 cut(s) 81
DdeI CTNAG 2 cut(s) 51, 86
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
EaeI YGGCCR 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
Ecl136II GAGCTC 2 cut(s) 16, 97
Eco24I GRGCYC 2 cut(s) 18, 99
Eco47I GGWCC 1 cut(s) 219
Eco53kI GAGCTC 2 cut(s) 16, 97
Eco57I CTGAAG 1 cut(s) 159
Eco88I CYCGRG 1 cut(s) 92
EcoICRI GAGCTC 2 cut(s) 16, 97
EcoRII CCWGG 1 cut(s) 261
EcoT38I GRGCYC 2 cut(s) 18, 99
FaeI CATG 1 cut(s) 297
FaiI YATR 1 cut(s) 295
FaqI GGGAC 2 cut(s) 75, 195
FatI CATG 1 cut(s) 293
FblI GTMKAC 1 cut(s) 29
Fnu4HI GCNGC 1 cut(s) 308
FokI GGATG 1 cut(s) 74
FriOI GRGCYC 2 cut(s) 18, 99
Fsp4HI GCNGC 1 cut(s) 308
GluI GCNGC 1 cut(s) 308
HaeIII GGCC 1 cut(s) 276
HgaI GACGC 1 cut(s) 245
Hin1II CATG 1 cut(s) 297
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HindIII AAGCTT 1 cut(s) 141
HinfI GANTC 2 cut(s) 201, 299
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 2 cut(s) 38, 75
Hpy188III TCNNGA 2 cut(s) 92, 247
Hpy8I GTNNAC 1 cut(s) 30
Hpy99I CGWCG 2 cut(s) 10, 34
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 2 cut(s) 80, 271
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 1 cut(s) 190
HpyF10VI GCNNNNNNNGC 1 cut(s) 171
HpyF3I CTNAG 2 cut(s) 51, 86
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 1 cut(s) 297
Kzo9I GATC 1 cut(s) 33
LguI GCTCTTC 1 cut(s) 155
LpnPI CCDG 5 cut(s) 7, 92, 218, 248, 275
Lsp1109I GCAGC 1 cut(s) 294
LweI GCATC 1 cut(s) 183
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 1 cut(s) 296
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MboII GAAGA 1 cut(s) 172
MhlI GDGCHC 2 cut(s) 18, 99
MlyI GAGTC 1 cut(s) 293
MnlI CCTC 2 cut(s) 18, 247
MseI TTAA 1 cut(s) 282
MspR9I CCNGG 1 cut(s) 263
MvaI CCWGG 1 cut(s) 263
MwoI GCNNNNNNNGC 1 cut(s) 171
NdeII GATC 1 cut(s) 33
NlaIII CATG 1 cut(s) 297
NmuCI GTSAC 1 cut(s) 296
NspI RCATGY 1 cut(s) 297
PciSI GCTCTTC 1 cut(s) 155
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PfeI GAWTC 1 cut(s) 201
PkrI GCNGC 1 cut(s) 309
Ple19I CGATCG 1 cut(s) 36
PleI GAGTC 1 cut(s) 293
PpsI GAGTC 1 cut(s) 293
Psp124BI GAGCTC 2 cut(s) 18, 99
Psp6I CCWGG 1 cut(s) 261
PspGI CCWGG 1 cut(s) 261
PspPI GGNCC 1 cut(s) 219
PstNI CAGNNNCTG 1 cut(s) 204
PvuI CGATCG 1 cut(s) 36
RsaI GTAC 1 cut(s) 82
RsaNI GTAC 1 cut(s) 81
SacI GAGCTC 2 cut(s) 18, 99
SalI GTCGAC 1 cut(s) 28
SapI GCTCTTC 1 cut(s) 155
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 1 cut(s) 308
Sau3AI GATC 1 cut(s) 33
Sau96I GGNCC 1 cut(s) 219
SchI GAGTC 1 cut(s) 293
ScrFI CCNGG 1 cut(s) 263
SduI GDGCHC 2 cut(s) 18, 99
SfaNI GCATC 1 cut(s) 183
SfcI CTRYAG 2 cut(s) 19, 196
SinI GGWCC 1 cut(s) 219
SstI GAGCTC 2 cut(s) 18, 99
StyD4I CCNGG 1 cut(s) 261
TaaI ACNGT 2 cut(s) 80, 271
TaiI ACGT 1 cut(s) 11
TaqI TCGA 2 cut(s) 29, 123
TfiI GAWTC 1 cut(s) 201
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TseFI GTSAC 1 cut(s) 296
TseI GCWGC 1 cut(s) 307
Tsp45I GTSAC 1 cut(s) 296
TspDTI ATGAA 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 219
XceI RCATGY 1 cut(s) 297
XcmI CCANNNNNNNNNTGG 1 cut(s) 269
XmiI GTMKAC 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.