Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0008441

Physical Location & Seq

Genomic Coordinates Reverse (-)

9483291 .. 9483653

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG128400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGCTACGCTTTACATGAACTCAAGGATCGGAATGTGTCTGACTGAGGCTTTGGAGGAGATGATTGAGAGCAGAACTCTCTCTGCTGAACTTGCCTATCAGGTTCTTCTCCAGTTCGACAGGTCTATGGCTGAAGCTCTGGAAACCCGAGTGAGAAACAAAGTCACAATCAAAGTAAACCCTTCTCTAAGTAAAGCATTGCTTAGATATAAACTCTTATTTTATATGTTTATCATAGGTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000988 GO:0000989 GO:0000990 GO:0000991 GO:0001076 GO:0001085 GO:0001103 GO:0001129 GO:0001132 GO:0003674 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005672 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009301 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016073 GO:0016591 GO:0017025 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042795 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046982 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051090 GO:0051091 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070491 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0098781 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05203 map03022 map05203

Pfam Domains

Protein Families

TFIIA_gamma_C TFIIA_gamma_N

Protein Analysis

81

Amino Acids

9.33

Weight (kDa)

8.89

Isoelectric Point (pI)

59.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIIA_gamma_N	PF02268	3 - 47	9.9e-16	Transcription initiation factor IIA, gamma subunit, helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24440 AT4G24440
fragaria_vesca	FvH4_5g34180
malus_domestica	MD08G1203900.v1.1
prunus_persica	Prupe.1G536300_v2.0.a1
pyrus_communis	pycom08g17590
rosa_chinensis	RchiOBHm_Chr5g0012851 RchiOBHm_Chr7g0233761
rosa_laevigata	RLG00000001236 RLG00000031961
rosa_multiflora	Rmu_sc0002365.1_g000032
rosa_roxburghii	Rroxscaffold_1G00063750 Rroxscaffold_3G00227010
rosa_rugosa	Rorug07G0282500 Rorug07G0282600
rosa_samantha	Rh5AG098600 Rh5CG107500 Rh7BG128400 Rh7BG411500
rosa_wichuraiana	Rw1G012030 Rw5G008620 Rw7G028720 Rw7G036250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	35
AcuI	CTGAAG	1 cut(s)	153
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
AlwI	GGATC	1 cut(s)	35
Ama87I	CYCGRG	1 cut(s)	147
ArsI	GACNNNNNNTTYG	2 cut(s)	34, 66
AvaI	CYCGRG	1 cut(s)	147
BmeT110I	CYCGRG	1 cut(s)	147
BplI	GAGNNNNNCTC	2 cut(s)	61, 93
BpmI	CTGGAG	1 cut(s)	95
BpuEI	CTTGAG	1 cut(s)	7
Bse1I	ACTGG	1 cut(s)	112
Bse3DI	GCAATG	1 cut(s)	197
BseMI	GCAATG	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	1 cut(s)	112
BseRI	GAGGAG	1 cut(s)	71
BsiHKCI	CYCGRG	1 cut(s)	147
BsoBI	CYCGRG	1 cut(s)	147
Bsp143I	GATC	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	37
BspPI	GGATC	1 cut(s)	35
BsrDI	GCAATG	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	112
BssMI	GATC	1 cut(s)	27
BstDEI	CTNAG	3 cut(s)	45, 188, 203
BstKTI	GATC	1 cut(s)	30
BstMBI	GATC	1 cut(s)	27
BstMWI	GCNNNNNNNGC	1 cut(s)	92
CviAII	CATG	1 cut(s)	16
CviJI	RGCY	4 cut(s)	5, 50, 131, 137
CviKI_1	RGCY	4 cut(s)	5, 50, 131, 137
DdeI	CTNAG	3 cut(s)	45, 188, 203
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	153
Eco88I	CYCGRG	1 cut(s)	147
FaeI	CATG	1 cut(s)	19
FaiI	YATR	7 cut(s)	17, 128, 210, 225, 227, 236, 244
FalI	AAGNNNNNCTT	2 cut(s)	186, 218
FatI	CATG	1 cut(s)	15
GsuI	CTGGAG	1 cut(s)	95
Hin1II	CATG	1 cut(s)	19
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	2 cut(s)	32, 42
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	1 cut(s)	178
HpyAV	CCTTC	1 cut(s)	192
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	3 cut(s)	45, 188, 203
Hsp92II	CATG	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	27
LpnPI	CCDG	4 cut(s)	86, 106, 125, 125
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	1 cut(s)	29
MboI	GATC	1 cut(s)	27
MboII	GAAGA	1 cut(s)	98
MnlI	CCTC	2 cut(s)	40, 49
MwoI	GCNNNNNNNGC	1 cut(s)	92
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	1 cut(s)	19
NmuCI	GTSAC	1 cut(s)	163
Sau3AI	GATC	1 cut(s)	27
SetI	ASST	4 cut(s)	105, 125, 139, 241
SgeI	CNNG	9 cut(s)	28, 36, 104, 113, 124, 133, 152, 159, 161
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
TaqI	TCGA	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	163
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	2 cut(s)	32, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.