TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G24440 AT4G24440 |
| fragaria_vesca | FvH4_5g34180 |
| malus_domestica | MD08G1203900.v1.1 |
| prunus_persica | Prupe.1G536300_v2.0.a1 |
| pyrus_communis | pycom08g17590 |
| rosa_chinensis | RchiOBHm_Chr5g0012851 RchiOBHm_Chr7g0233761 |
| rosa_laevigata | RLG00000001236 RLG00000031961 |
| rosa_multiflora | Rmu_sc0002365.1_g000032 |
| rosa_roxburghii | Rroxscaffold_1G00063750 Rroxscaffold_3G00227010 |
| rosa_rugosa | Rorug07G0282500 Rorug07G0282600 |
| rosa_samantha | Rh5AG098600 Rh5CG107500 Rh7BG128400 Rh7BG411500 |
| rosa_wichuraiana | Rw1G012030 Rw5G008620 Rw7G028720 Rw7G036250 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 260 |
| AciI | CCGC | 1 cut(s) | 286 |
| AclI | AACGTT | 1 cut(s) | 279 |
| AcyI | GRCGYC | 1 cut(s) | 261 |
| AfaI | GTAC | 1 cut(s) | 225 |
| AluBI | AGCT | 3 cut(s) | 21, 137, 342 |
| AluI | AGCT | 3 cut(s) | 21, 137, 342 |
| Alw26I | GTCTC | 1 cut(s) | 41 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 106 |
| Ama87I | CYCGRG | 2 cut(s) | 22, 147 |
| AoxI | GGCC | 1 cut(s) | 300 |
| AspLEI | GCGC | 1 cut(s) | 263 |
| AsuHPI | GGTGA | 1 cut(s) | 73 |
| AvaI | CYCGRG | 2 cut(s) | 22, 147 |
| BanI | GGYRCC | 1 cut(s) | 260 |
| BauI | CACGAG | 1 cut(s) | 343 |
| BccI | CCATC | 1 cut(s) | 176 |
| BcoDI | GTCTC | 1 cut(s) | 41 |
| BfoI | RGCGCY | 1 cut(s) | 264 |
| BmeT110I | CYCGRG | 2 cut(s) | 22, 147 |
| BmiI | GGNNCC | 1 cut(s) | 262 |
| BmsI | GCATC | 2 cut(s) | 51, 220 |
| BpuEI | CTTGAG | 2 cut(s) | 86, 117 |
| BsaHI | GRCGYC | 1 cut(s) | 261 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 149, 179 |
| BseRI | GAGGAG | 1 cut(s) | 287 |
| BshFI | GGCC | 1 cut(s) | 302 |
| BshNI | GGYRCC | 1 cut(s) | 260 |
| BsiHKCI | CYCGRG | 2 cut(s) | 22, 147 |
| BslFI | GGGAC | 1 cut(s) | 189 |
| BsmAI | GTCTC | 1 cut(s) | 41 |
| BsmFI | GGGAC | 1 cut(s) | 189 |
| BsnI | GGCC | 1 cut(s) | 302 |
| BsoBI | CYCGRG | 2 cut(s) | 22, 147 |
| BspACI | CCGC | 1 cut(s) | 286 |
| BspANI | GGCC | 1 cut(s) | 302 |
| BspLI | GGNNCC | 1 cut(s) | 262 |
| BspT107I | GGYRCC | 1 cut(s) | 260 |
| BssNI | GRCGYC | 1 cut(s) | 261 |
| BssSI | CACGAG | 1 cut(s) | 343 |
| Bst2BI | CACGAG | 1 cut(s) | 343 |
| Bst4CI | ACNGT | 1 cut(s) | 268 |
| Bst6I | CTCTTC | 1 cut(s) | 51 |
| BstACI | GRCGYC | 1 cut(s) | 261 |
| BstH2I | RGCGCY | 1 cut(s) | 264 |
| BstHHI | GCGC | 1 cut(s) | 263 |
| BstMAI | GTCTC | 1 cut(s) | 41 |
| BsuRI | GGCC | 1 cut(s) | 302 |
| CaiI | CAGNNNCTG | 1 cut(s) | 106 |
| CfoI | GCGC | 1 cut(s) | 263 |
| Csp6I | GTAC | 1 cut(s) | 224 |
| CviAII | CATG | 1 cut(s) | 206 |
| CviJI | RGCY | 7 cut(s) | 21, 131, 137, 164, 302, 318, 342 |
| CviKI_1 | RGCY | 7 cut(s) | 21, 131, 137, 164, 302, 318, 342 |
| CviQI | GTAC | 1 cut(s) | 224 |
| DinI | GGCGCC | 1 cut(s) | 262 |
| Eam1104I | CTCTTC | 1 cut(s) | 51 |
| EarI | CTCTTC | 1 cut(s) | 51 |
| Eco88I | CYCGRG | 2 cut(s) | 22, 147 |
| EgeI | GGCGCC | 1 cut(s) | 262 |
| EheI | GGCGCC | 1 cut(s) | 262 |
| FaeI | CATG | 1 cut(s) | 209 |
| FaiI | YATR | 4 cut(s) | 128, 186, 207, 335 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 48, 80 |
| FaqI | GGGAC | 1 cut(s) | 189 |
| FatI | CATG | 1 cut(s) | 205 |
| GlaI | GCGC | 1 cut(s) | 262 |
| HaeII | RGCGCY | 1 cut(s) | 264 |
| HaeIII | GGCC | 1 cut(s) | 302 |
| HhaI | GCGC | 1 cut(s) | 263 |
| Hin1I | GRCGYC | 1 cut(s) | 261 |
| Hin1II | CATG | 1 cut(s) | 209 |
| Hin6I | GCGC | 1 cut(s) | 261 |
| HinP1I | GCGC | 1 cut(s) | 261 |
| HincII | GTYRAC | 1 cut(s) | 283 |
| HindII | GTYRAC | 1 cut(s) | 283 |
| HindIII | AAGCTT | 1 cut(s) | 135 |
| HinfI | GANTC | 1 cut(s) | 122 |
| HphI | GGTGA | 1 cut(s) | 73 |
| Hpy166II | GTNNAC | 2 cut(s) | 226, 283 |
| Hpy188I | TCNGA | 2 cut(s) | 143, 242 |
| Hpy188III | TCNNGA | 1 cut(s) | 345 |
| Hpy8I | GTNNAC | 2 cut(s) | 226, 283 |
| Hpy99I | CGWCG | 2 cut(s) | 122, 272 |
| HpyCH4III | ACNGT | 1 cut(s) | 268 |
| HpyCH4IV | ACGT | 1 cut(s) | 279 |
| HpyCH4V | TGCA | 2 cut(s) | 184, 201 |
| HpySE526I | ACGT | 1 cut(s) | 279 |
| Hsp92I | GRCGYC | 1 cut(s) | 261 |
| Hsp92II | CATG | 1 cut(s) | 209 |
| HspAI | GCGC | 1 cut(s) | 261 |
| KasI | GGCGCC | 1 cut(s) | 260 |
| LmnI | GCTCC | 1 cut(s) | 114 |
| LpnPI | CCDG | 5 cut(s) | 26, 86, 260, 316, 333 |
| LweI | GCATC | 2 cut(s) | 51, 220 |
| MaeII | ACGT | 1 cut(s) | 279 |
| MaeIII | GTNAC | 1 cut(s) | 305 |
| MboII | GAAGA | 1 cut(s) | 68 |
| MluCI | AATT | 2 cut(s) | 113, 193 |
| Mly113I | GGCGCC | 1 cut(s) | 261 |
| MlyI | GAGTC | 1 cut(s) | 131 |
| MnlI | CCTC | 2 cut(s) | 175, 265 |
| MseI | TTAA | 1 cut(s) | 291 |
| NarI | GGCGCC | 1 cut(s) | 261 |
| NlaIII | CATG | 1 cut(s) | 209 |
| NlaIV | GGNNCC | 1 cut(s) | 262 |
| NmuCI | GTSAC | 1 cut(s) | 305 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 234, 276 |
| PleI | GAGTC | 1 cut(s) | 130 |
| PluTI | GGCGCC | 1 cut(s) | 264 |
| PpsI | GAGTC | 1 cut(s) | 130 |
| Psp1406I | AACGTT | 1 cut(s) | 279 |
| PspN4I | GGNNCC | 1 cut(s) | 262 |
| PstNI | CAGNNNCTG | 1 cut(s) | 106 |
| RsaI | GTAC | 1 cut(s) | 225 |
| RsaNI | GTAC | 1 cut(s) | 224 |
| SaqAI | TTAA | 1 cut(s) | 291 |
| SchI | GAGTC | 1 cut(s) | 131 |
| SetI | ASST | 7 cut(s) | 23, 105, 139, 191, 282, 330, 344 |
| SfaNI | GCATC | 2 cut(s) | 51, 220 |
| SfoI | GGCGCC | 1 cut(s) | 262 |
| SmlI | CTYRAG | 2 cut(s) | 65, 132 |
| SmoI | CTYRAG | 2 cut(s) | 65, 132 |
| Sse9I | AATT | 2 cut(s) | 113, 193 |
| SsiI | CCGC | 1 cut(s) | 286 |
| SspDI | GGCGCC | 1 cut(s) | 260 |
| SspI | AATATT | 1 cut(s) | 256 |
| TaaI | ACNGT | 1 cut(s) | 268 |
| TaiI | ACGT | 1 cut(s) | 282 |
| TaqI | TCGA | 2 cut(s) | 117, 270 |
| TasI | AATT | 2 cut(s) | 113, 193 |
| Tru1I | TTAA | 1 cut(s) | 291 |
| Tru9I | TTAA | 1 cut(s) | 291 |
| TseFI | GTSAC | 1 cut(s) | 305 |
| Tsp45I | GTSAC | 1 cut(s) | 305 |
| TspGWI | ACGGA | 2 cut(s) | 87, 211 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 254 |