Rw7G028720

TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0008441
Physical Location & Seq
Reverse (-)
39341118 .. 39342189
1072 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G028720.1

Sequence Viewer

Length: 258 bp
ATGTGTCTGATTGAGACTTTGGATGAGATGGTTCAGAATGGGACTCTCAGTCCTGAGCTTGCCATTCAGGTTCTGTCTATGAGTGAGGCTCTGGAAACCCAAGTGAAGAGCAAGGTCTCCATCAAGGTAATGTTCTTTATTTCGTGTTTGTATTTCTGGGTTTTCGTACCGAGATTTGAATTACTGAGATGCTTTGTTGGGTCTGAACATGCGTCTCCCATGTGGTTTGCTTGTGTATTTGAGTTGACTTTGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0003674 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005672 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016591 GO:0017025 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051090 GO:0051091 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05203 map03022 map05203
Pfam Domains
Protein Families
TFIIA_gamma_C TFIIA_gamma_N

Protein Analysis

85

Amino Acids

9.75

Weight (kDa)

4.72

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIIA_gamma_N PF02268 1 - 26 2.1e-06 Transcription initiation factor IIA, gamma subunit, helical domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 168
AgsI TTSAA 1 cut(s) 179
AhdI GACNNNNNGTC 1 cut(s) 48
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
Alw26I GTCTC 3 cut(s) 8, 121, 219
AlwNI CAGNNNCTG 1 cut(s) 73
BccI CCATC 2 cut(s) 22, 128
BcoDI GTCTC 3 cut(s) 8, 121, 219
BmeRI GACNNNNNGTC 1 cut(s) 48
BmsI GCATC 1 cut(s) 179
BplI GAGNNNNNCTC 2 cut(s) 73, 105
Bpu10I CCTNAGC 1 cut(s) 54
BsaI GGTCTC 1 cut(s) 121
BseGI GGATG 1 cut(s) 28
BseMII CTCAG 3 cut(s) 45, 61, 176
BslFI GGGAC 1 cut(s) 55
BsmAI GTCTC 3 cut(s) 8, 121, 219
BsmBI CGTCTC 1 cut(s) 219
BsmFI GGGAC 1 cut(s) 55
Bso31I GGTCTC 1 cut(s) 121
BspCNI CTCAG 3 cut(s) 46, 60, 177
BspQI GCTCTTC 1 cut(s) 101
BspTNI GGTCTC 1 cut(s) 121
Bst6I CTCTTC 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 4 cut(s) 47, 54, 185, 255
BstF5I GGATG 1 cut(s) 28
BstMAI GTCTC 3 cut(s) 8, 121, 219
BstNSI RCATGY 1 cut(s) 212
BtsCI GGATG 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 60
CaiI CAGNNNCTG 1 cut(s) 73
CseI GACGC 1 cut(s) 201
Csp6I GTAC 1 cut(s) 167
CviAII CATG 2 cut(s) 209, 220
CviJI RGCY 2 cut(s) 58, 89
CviKI_1 RGCY 2 cut(s) 58, 89
CviQI GTAC 1 cut(s) 167
DdeI CTNAG 4 cut(s) 47, 54, 185, 255
DriI GACNNNNNGTC 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 101
Eam1105I GACNNNNNGTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 101
Eco31I GGTCTC 1 cut(s) 121
Esp3I CGTCTC 1 cut(s) 219
FaeI CATG 2 cut(s) 212, 223
FaiI YATR 3 cut(s) 80, 210, 221
FaqI GGGAC 1 cut(s) 55
FatI CATG 2 cut(s) 208, 219
FokI GGATG 1 cut(s) 35
HgaI GACGC 1 cut(s) 201
Hin1II CATG 2 cut(s) 212, 223
HincII GTYRAC 1 cut(s) 246
HindII GTYRAC 1 cut(s) 246
HinfI GANTC 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 246
Hpy188I TCNGA 3 cut(s) 9, 36, 205
Hpy188III TCNNGA 2 cut(s) 53, 92
Hpy8I GTNNAC 1 cut(s) 246
HpyF3I CTNAG 4 cut(s) 47, 54, 185, 255
Hsp92II CATG 2 cut(s) 212, 223
LguI GCTCTTC 1 cut(s) 101
LpnPI CCDG 4 cut(s) 53, 66, 77, 142
LweI GCATC 1 cut(s) 179
MboII GAAGA 1 cut(s) 118
MluCI AATT 1 cut(s) 179
MlyI GAGTC 1 cut(s) 37
MnlI CCTC 1 cut(s) 79
NlaIII CATG 2 cut(s) 212, 223
NspI RCATGY 1 cut(s) 212
PciSI GCTCTTC 1 cut(s) 101
PflFI GACNNNGTC 1 cut(s) 250
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
PstNI CAGNNNCTG 1 cut(s) 73
PsyI GACNNNGTC 1 cut(s) 250
RsaI GTAC 1 cut(s) 168
RsaNI GTAC 1 cut(s) 167
SapI GCTCTTC 1 cut(s) 101
SchI GAGTC 1 cut(s) 37
SetI ASST 4 cut(s) 60, 72, 117, 129
SfaNI GCATC 1 cut(s) 179
Sse9I AATT 1 cut(s) 179
TasI AATT 1 cut(s) 179
Tth111I GACNNNGTC 1 cut(s) 250
XceI RCATGY 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.