Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008441

Physical Location & Seq

Genomic Coordinates Reverse (-)

17813807 .. 17817186

Gene Structure 3380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g17590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGTGTTTAACGGAGACTTTGGACGAGATGGTTCAGAGCGGGACTCTCAGTCCAGACCTCGCTATTCAAGTTCTCACTCAGTTCGACAAGTCGATGACTGAAGCCCTTGAAAACCAAGTGAAGAGCAAGGTCACCATCAAGGGACATTTGCACACCTATAGATTCTGCGACAACGTTTGGACCTTCATCTTACAGGATGCTTTGTTCAAGAACGAGGATAACCAGGAAAATGTTGGCCGTGTTAAAATAGTGGCATGTGACTCAAAGCTGCTGACACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005672 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016591 GO:0017025 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051090 GO:0051091 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05203 map03022 map05203

Pfam Domains

Protein Families

TFIIA_gamma_C TFIIA_gamma_N

Protein Analysis

94

Amino Acids

10.58

Weight (kDa)

4.97

Isoelectric Point (pI)

28.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIIA_gamma_N	PF02268	1 - 36	7.7e-14	Transcription initiation factor IIA, gamma subunit, helical domain
TFIIA_gamma_C	PF02751	47 - 88	3e-22	Transcription initiation factor IIA, gamma subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24440 AT4G24440
fragaria_vesca	FvH4_5g34180
malus_domestica	MD08G1203900.v1.1
prunus_persica	Prupe.1G536300_v2.0.a1
pyrus_communis	pycom08g17590
rosa_chinensis	RchiOBHm_Chr5g0012851 RchiOBHm_Chr7g0233761
rosa_laevigata	RLG00000001236 RLG00000031961
rosa_multiflora	Rmu_sc0002365.1_g000032
rosa_roxburghii	Rroxscaffold_1G00063750 Rroxscaffold_3G00227010
rosa_rugosa	Rorug07G0282500 Rorug07G0282600
rosa_samantha	Rh5AG098600 Rh5CG107500 Rh7BG128400 Rh7BG411500
rosa_wichuraiana	Rw1G012030 Rw5G008620 Rw7G028720 Rw7G036250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	39
AciI	CCGC	1 cut(s)	39
AclI	AACGTT	1 cut(s)	174
AcoI	YGGCCR	1 cut(s)	235
AcuI	CTGAAG	1 cut(s)	120
AgsI	TTSAA	3 cut(s)	68, 110, 208
AhdI	GACNNNNNGTC	1 cut(s)	48
AjnI	CCWGG	1 cut(s)	222
AloI	GAACNNNNNNTCC	2 cut(s)	188, 220
AluBI	AGCT	1 cut(s)	268
AluI	AGCT	1 cut(s)	268
Alw26I	GTCTC	1 cut(s)	8
AoxI	GGCC	1 cut(s)	235
ApeKI	GCWGC	1 cut(s)	268
AspS9I	GGNCC	1 cut(s)	180
AsuHPI	GGTGA	1 cut(s)	124
AvaII	GGWCC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	255
BccI	CCATC	2 cut(s)	22, 143
BceAI	ACGGC	1 cut(s)	222
BciT130I	CCWGG	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	8
BfmI	CTRYAG	1 cut(s)	157
BisI	GCNGC	1 cut(s)	269
BlsI	GCNGC	1 cut(s)	270
Bme1390I	CCNGG	1 cut(s)	224
Bme18I	GGWCC	1 cut(s)	180
BmeRI	GACNNNNNGTC	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	180
BmrFI	CCNGG	1 cut(s)	224
BmsI	GCATC	1 cut(s)	187
BplI	GAGNNNNNCTC	2 cut(s)	28, 60
BseBI	CCWGG	1 cut(s)	224
BseGI	GGATG	1 cut(s)	202
BseMII	CTCAG	2 cut(s)	61, 92
BseXI	GCAGC	1 cut(s)	255
BshFI	GGCC	1 cut(s)	237
BslFI	GGGAC	2 cut(s)	55, 156
BsmAI	GTCTC	1 cut(s)	8
BsmFI	GGGAC	2 cut(s)	55, 156
BsnI	GGCC	1 cut(s)	237
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	1 cut(s)	237
BspCNI	CTCAG	2 cut(s)	60, 91
BspQI	GCTCTTC	1 cut(s)	116
BsrBI	CCGCTC	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	224
Bst6I	CTCTTC	1 cut(s)	116
BstDEI	CTNAG	2 cut(s)	47, 78
BstEII	GGTNACC	1 cut(s)	130
BstF5I	GGATG	1 cut(s)	202
BstMAI	GTCTC	1 cut(s)	8
BstNI	CCWGG	1 cut(s)	224
BstNSI	RCATGY	1 cut(s)	258
BstPI	GGTNACC	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	222
BstSFI	CTRYAG	1 cut(s)	157
BstV1I	GCAGC	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	202
Cfr13I	GGNCC	1 cut(s)	180
CviAII	CATG	1 cut(s)	255
CviJI	RGCY	3 cut(s)	104, 237, 268
CviKI_1	RGCY	3 cut(s)	104, 237, 268
DdeI	CTNAG	2 cut(s)	47, 78
DriI	GACNNNNNGTC	1 cut(s)	48
EaeI	YGGCCR	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	116
Eam1105I	GACNNNNNGTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	120
Eco91I	GGTNACC	1 cut(s)	130
EcoO65I	GGTNACC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	222
FaeI	CATG	1 cut(s)	258
FaiI	YATR	2 cut(s)	159, 256
FaqI	GGGAC	2 cut(s)	55, 156
FatI	CATG	1 cut(s)	254
FauI	CCCGC	1 cut(s)	32
Fnu4HI	GCNGC	1 cut(s)	269
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	1 cut(s)	269
GluI	GCNGC	1 cut(s)	269
HaeIII	GGCC	1 cut(s)	237
Hin1II	CATG	1 cut(s)	258
HinfI	GANTC	3 cut(s)	43, 162, 260
HphI	GGTGA	1 cut(s)	124
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	2 cut(s)	53, 208
HpyAV	CCTTC	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	1 cut(s)	151
HpyF3I	CTNAG	2 cut(s)	47, 78
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	1 cut(s)	258
LguI	GCTCTTC	1 cut(s)	116
LpnPI	CCDG	4 cut(s)	66, 179, 209, 236
Lsp1109I	GCAGC	1 cut(s)	255
LweI	GCATC	1 cut(s)	187
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	2 cut(s)	130, 257
MbiI	CCGCTC	1 cut(s)	39
MboII	GAAGA	1 cut(s)	133
MlyI	GAGTC	2 cut(s)	37, 254
MnlI	CCTC	2 cut(s)	68, 208
MseI	TTAA	2 cut(s)	8, 243
MspR9I	CCNGG	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	224
NlaIII	CATG	1 cut(s)	258
NmuCI	GTSAC	2 cut(s)	130, 257
NspI	RCATGY	1 cut(s)	258
PciSI	GCTCTTC	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	162
PkrI	GCNGC	1 cut(s)	270
PleI	GAGTC	2 cut(s)	37, 254
PpsI	GAGTC	2 cut(s)	37, 254
Psp1406I	AACGTT	1 cut(s)	174
Psp6I	CCWGG	1 cut(s)	222
PspEI	GGTNACC	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	116
SaqAI	TTAA	2 cut(s)	8, 243
SatI	GCNGC	1 cut(s)	269
Sau96I	GGNCC	1 cut(s)	180
SchI	GAGTC	2 cut(s)	37, 254
ScrFI	CCNGG	1 cut(s)	224
SetI	ASST	6 cut(s)	60, 132, 158, 177, 185, 270
SfaNI	GCATC	1 cut(s)	187
SfcI	CTRYAG	1 cut(s)	157
SinI	GGWCC	1 cut(s)	180
SsiI	CCGC	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	222
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	2 cut(s)	84, 92
TfiI	GAWTC	1 cut(s)	162
Tru1I	TTAA	2 cut(s)	8, 243
Tru9I	TTAA	2 cut(s)	8, 243
TseFI	GTSAC	2 cut(s)	130, 257
TseI	GCWGC	1 cut(s)	268
Tsp45I	GTSAC	2 cut(s)	130, 257
TspDTI	ATGAA	1 cut(s)	175
TspGWI	ACGGA	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	180
XceI	RCATGY	1 cut(s)	258
XcmI	CCANNNNNNNNNTGG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.