Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0008441

Physical Location & Seq

Genomic Coordinates Forward (+)

26972983 .. 26975817

Gene Structure 2835 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G012030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

ATGTGTCTGACTGAGACTTTGGATGAGATGGTTCAGAACGGGACTCTCAGTCCTGAGCTTGCCATTCAGGTTCTATCTATGAGTGAGGCTCTGGAAACCCAAGTGAAGAGCAAGGTCTCCATCAAGGTAATATGCTGTTTAAGGGTTTTCCCGATGCTTCTGATTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005672 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016591 GO:0017025 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051090 GO:0051091 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05203 map03022 map05203

Pfam Domains

Protein Families

TFIIA_gamma_C TFIIA_gamma_N

Protein Analysis

56

Amino Acids

6.24

Weight (kDa)

5.05

Isoelectric Point (pI)

36.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIIA_gamma_N	PF02268	1 - 26	1.7e-07	Transcription initiation factor IIA, gamma subunit, helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24440 AT4G24440
fragaria_vesca	FvH4_5g34180
malus_domestica	MD08G1203900.v1.1
prunus_persica	Prupe.1G536300_v2.0.a1
pyrus_communis	pycom08g17590
rosa_chinensis	RchiOBHm_Chr5g0012851 RchiOBHm_Chr7g0233761
rosa_laevigata	RLG00000001236 RLG00000031961
rosa_multiflora	Rmu_sc0002365.1_g000032
rosa_roxburghii	Rroxscaffold_1G00063750 Rroxscaffold_3G00227010
rosa_rugosa	Rorug07G0282500 Rorug07G0282600
rosa_samantha	Rh5AG098600 Rh5CG107500 Rh7BG128400 Rh7BG411500
rosa_wichuraiana	Rw1G012030 Rw5G008620 Rw7G028720 Rw7G036250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AhdI	GACNNNNNGTC	1 cut(s)	48
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
Alw26I	GTCTC	2 cut(s)	8, 121
ArsI	GACNNNNNNTTYG	1 cut(s)	33
BccI	CCATC	2 cut(s)	22, 128
BcoDI	GTCTC	2 cut(s)	8, 121
BmeRI	GACNNNNNGTC	1 cut(s)	48
BmsI	GCATC	1 cut(s)	144
BplI	GAGNNNNNCTC	2 cut(s)	73, 105
Bpu10I	CCTNAGC	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	121
BseGI	GGATG	1 cut(s)	28
BseMII	CTCAG	2 cut(s)	45, 61
BslFI	GGGAC	1 cut(s)	55
BsmAI	GTCTC	2 cut(s)	8, 121
BsmFI	GGGAC	1 cut(s)	55
Bso31I	GGTCTC	1 cut(s)	121
BspCNI	CTCAG	3 cut(s)	4, 46, 60
BspQI	GCTCTTC	1 cut(s)	101
BspTNI	GGTCTC	1 cut(s)	121
Bst6I	CTCTTC	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	3 cut(s)	12, 47, 54
BstF5I	GGATG	1 cut(s)	28
BstMAI	GTCTC	2 cut(s)	8, 121
BtsCI	GGATG	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	60
CviJI	RGCY	2 cut(s)	58, 89
CviKI_1	RGCY	2 cut(s)	58, 89
DdeI	CTNAG	3 cut(s)	12, 47, 54
DriI	GACNNNNNGTC	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	101
Eam1105I	GACNNNNNGTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	101
Eco31I	GGTCTC	1 cut(s)	121
FaiI	YATR	2 cut(s)	80, 133
FaqI	GGGAC	1 cut(s)	55
FokI	GGATG	1 cut(s)	35
HinfI	GANTC	2 cut(s)	43, 163
Hpy188I	TCNGA	3 cut(s)	9, 36, 162
Hpy188III	TCNNGA	3 cut(s)	53, 92, 151
HpyF3I	CTNAG	3 cut(s)	12, 47, 54
LguI	GCTCTTC	1 cut(s)	101
LpnPI	CCDG	3 cut(s)	53, 66, 77
LweI	GCATC	1 cut(s)	144
MboII	GAAGA	1 cut(s)	118
MlyI	GAGTC	1 cut(s)	37
MnlI	CCTC	1 cut(s)	79
MseI	TTAA	1 cut(s)	140
PciSI	GCTCTTC	1 cut(s)	101
PfeI	GAWTC	1 cut(s)	163
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
SapI	GCTCTTC	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	140
SchI	GAGTC	1 cut(s)	37
SetI	ASST	4 cut(s)	60, 72, 117, 129
SfaNI	GCATC	1 cut(s)	144
SgeI	CNNG	9 cut(s)	52, 65, 71, 80, 104, 113, 124, 136, 163
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TspDTI	ATGAA	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.