MD08G1221400.v1.1

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
28400001 .. 28402399
2399 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1221400.v1.1.491

Sequence Viewer

Length: 1344 bp
ATGGGGGGTATATTGAGCTTGAACCATTCCAAGGCTAGGGTCGGTGAACCGTCTCAAGATTTACGTAGTGCATCTTGCAAGAGACCGAGGTTGTCCCCAAGCTTTTATGACGAAAACCCGAGATTGATTCCCTGTCTTCCTGACGAGATATCTATTCAGATTCTTGCTAGAATTCCTAGGATCCACTATATGAAGCTCAAGTCTGTTTCGAGGACCTGGAAAGCCACCGTTACAAGTGCTGAACTCTTCTCTTTGAGAAAAGAGCTAGGAACAAAGGAGGAATGGCTCTACATGTTAACAAAGGTCCAAAATGATAAGCTCATATGGTATGCACTTGATCCTATGGCCGGAAGATGGCAAAGGTTGCCACCTATGCCTAATGTTACTCTGGAAGATGAATCTAGGAAAGGTTTAACTGGCCAGAGAATGTGGAATATGGCAGGCTCCAGTATCAGAATTGCGGATGCCGTCATGGGGGGATTTTCCAAGGCTTCGGCCCTGAGATGCACATGGCGGTACAATCCAGTTAAAAATACTTGGAGTGAATCAAGTCCAATGTCAATTGGTAGAGCTTATTGTAAGACCGGCATCTTAAACAATAAGCTTTATGTTGTTGGAGGTGTTACAAGGGGTCATGGTGGATTGACCCCTCTTCAATCAGCTGAAGTATTTGATCCAAAAACAGGTGTGTGGTCTCAAGTACCAAGCATGCCTTTTATGAAAGCTCAGGTGTTACCAACTGCATTTTTGGCTGATCTGCTGAAGCCTATTGCTACTGGAATGACTTCATACAGGGGAAGGTTGTTTGTTCCCCAGAGTTTGTACTGCTGGCCATTTTTTGTTGATGTTGGAGGAGAGGTTTATGATCCAGAGGCAAATTCATGGGTTGAAATGCCAATTGGTATGGGCGAGGGTTGGCCTGCGAGGCAGGCAGGGACGAAAATGAGTGTCACAGTTGATGGTGAATTGTATGCACTGGATCCTTCTAGTTCTCTTGACAGTGCAAAGATCAAGGTATACGATTACCAAGCTGATGCCTGGAAGGTTGTTGCAGAAGATGTTCCAATTCGTGACTTCACTGAATCAGAGTCTCCCTATTTGCTTGCTGGATTGCTGGGGAAGCTTCATGTAATCACAAAGGATGCAAATCACAAAATTGCTGTTCTGCAGGCTTCGGTGCAGGACCATTTTGCGTCAAGCTCAGTAGCTTCATCCTCATCACACAATGACCCCCATGAAGATGTTGAACGACCAGCAGAATCAGAACGAGATCTCTGGAAAGTAATTGCCACAAGAAGTGCACGGGCTGCTGACCTGGTTAGTTGTCTAGTCCTTGATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

448

Amino Acids

49.59

Weight (kDa)

8.38

Isoelectric Point (pI)

52.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 43 - 83 1.4e-07 F-box domain
Kelch_1 PF01344 157 - 187 6.1e-06 Kelch motif
Kelch_FKB95 PF25210 157 - 380 7.3e-12 FKB95, Kelch-repeats domain
Kelch_1 PF01344 190 - 238 3.6e-13 Kelch motif
Kelch_2 PF07646 190 - 238 3.9e-06 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1017
AciI CCGC 2 cut(s) 461, 514
AclWI GGATC 7 cut(s) 175, 188, 332, 668, 860, 974, 987
AcoI YGGCCR 3 cut(s) 345, 418, 830
AcsI RAATTY 2 cut(s) 171, 877
AcuI CTGAAG 2 cut(s) 684, 782
AfaI GTAC 3 cut(s) 518, 702, 824
AfiI CCNNNNNNNGG 6 cut(s) 31, 36, 347, 354, 474, 683
AflIII ACRYGT 1 cut(s) 291
AgsI TTSAA 4 cut(s) 22, 656, 890, 1247
AjnI CCWGG 3 cut(s) 215, 1037, 1314
AjuI GAANNNNNNNTTGG 2 cut(s) 882, 914
Alw21I GWGCWC 1 cut(s) 1303
Alw26I GTCTC 4 cut(s) 57, 76, 699, 1095
Alw44I GTGCAC 1 cut(s) 1299
AlwI GGATC 7 cut(s) 175, 188, 332, 668, 860, 974, 987
Ama87I CYCGRG 1 cut(s) 118
AoxI GGCC 5 cut(s) 345, 418, 495, 830, 917
ApaLI GTGCAC 1 cut(s) 1299
ApeKI GCWGC 1 cut(s) 1307
ApoI RAATTY 2 cut(s) 171, 877
Asp700I GAANNNNTTC 2 cut(s) 784, 1059
AspA2I CCTAGG 1 cut(s) 176
AspS9I GGNCC 4 cut(s) 213, 304, 496, 1183
AsuHPI GGTGA 2 cut(s) 56, 974
AvaI CYCGRG 1 cut(s) 118
AvaII GGWCC 3 cut(s) 213, 304, 1183
AvrII CCTAGG 1 cut(s) 176
BaeGI GKGCMC 1 cut(s) 1303
BalI TGGCCA 2 cut(s) 420, 832
BamHI GGATCC 2 cut(s) 180, 979
BbsI GAAGAC 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 1303
BbvI GCAGC 1 cut(s) 1294
BccI CCATC 2 cut(s) 348, 953
BceAI ACGGC 1 cut(s) 452
BciT130I CCWGG 3 cut(s) 217, 1039, 1316
BcoDI GTCTC 4 cut(s) 57, 76, 699, 1095
BfaI CTAG 7 cut(s) 36, 168, 177, 266, 402, 987, 1328
BfmI CTRYAG 1 cut(s) 1166
BglI GCCNNNNNGGC 1 cut(s) 925
BglII AGATCT 1 cut(s) 1270
BisI GCNGC 1 cut(s) 1308
BlnI CCTAGG 1 cut(s) 176
BlsI GCNGC 1 cut(s) 1309
Bme1390I CCNGG 3 cut(s) 217, 1039, 1316
Bme18I GGWCC 3 cut(s) 213, 304, 1183
BmeT110I CYCGRG 1 cut(s) 118
BmgT120I GGNCC 4 cut(s) 213, 304, 496, 1183
BmiI GGNNCC 3 cut(s) 182, 445, 981
BmrFI CCNGG 3 cut(s) 217, 1039, 1316
BmsI GCATC 6 cut(s) 80, 454, 494, 597, 1024, 1132
BpiI GAAGAC 1 cut(s) 128
BpmI CTGGAG 1 cut(s) 430
Bpu10I CCTNAGC 1 cut(s) 726
BpuEI CTTGAG 3 cut(s) 39, 182, 681
BsaAI YACGTR 1 cut(s) 65
BsaBI GATNNNNATC 1 cut(s) 1146
BsaI GGTCTC 2 cut(s) 76, 699
BsaJI CCNNGG 4 cut(s) 30, 86, 176, 486
BsaXI ACNNNNNCTCC 2 cut(s) 843, 873
Bsc4I CCNNNNNNNGG 6 cut(s) 31, 36, 347, 354, 474, 683
Bse118I RCCGGY 1 cut(s) 584
Bse1I ACTGG 5 cut(s) 421, 447, 524, 781, 981
Bse8I GATNNNNATC 1 cut(s) 1146
BseBI CCWGG 3 cut(s) 217, 1039, 1316
BseDI CCNNGG 4 cut(s) 30, 86, 176, 486
BseGI GGATG 3 cut(s) 469, 1147, 1211
BseJI GATNNNNATC 1 cut(s) 1146
BseLI CCNNNNNNNGG 6 cut(s) 31, 36, 347, 354, 474, 683
BseMII CTCAG 3 cut(s) 491, 740, 1215
BseNI ACTGG 5 cut(s) 421, 447, 524, 781, 981
BseRI GAGGAG 1 cut(s) 867
BseSI GKGCMC 1 cut(s) 1303
BseXI GCAGC 1 cut(s) 1294
BseYI CCCAGC 1 cut(s) 1114
BsgI GTGCAG 1 cut(s) 1199
BshFI GGCC 5 cut(s) 347, 420, 497, 832, 919
BsiHKAI GWGCWC 1 cut(s) 1303
BsiHKCI CYCGRG 1 cut(s) 118
BsiSI CCGG 2 cut(s) 348, 585
BslFI GGGAC 2 cut(s) 79, 949
BslI CCNNNNNNNGG 6 cut(s) 31, 36, 347, 354, 474, 683
BsmAI GTCTC 4 cut(s) 57, 76, 699, 1095
BsmBI CGTCTC 1 cut(s) 57
BsmFI GGGAC 2 cut(s) 79, 949
BsnI GGCC 5 cut(s) 347, 420, 497, 832, 919
Bso31I GGTCTC 2 cut(s) 76, 699
BsoBI CYCGRG 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 1303
Bsp143I GATC 8 cut(s) 180, 337, 673, 754, 865, 979, 1008, 1270
BspACI CCGC 2 cut(s) 461, 514
BspANI GGCC 5 cut(s) 347, 420, 497, 832, 919
BspCNI CTCAG 3 cut(s) 492, 739, 1214
BspLI GGNNCC 3 cut(s) 182, 445, 981
BspMAI CTGCAG 1 cut(s) 1170
BspPI GGATC 7 cut(s) 175, 188, 332, 668, 860, 974, 987
BspTNI GGTCTC 2 cut(s) 76, 699
BsrFI RCCGGY 1 cut(s) 584
BsrI ACTGG 5 cut(s) 421, 447, 524, 781, 981
BssAI RCCGGY 1 cut(s) 584
BssECI CCNNGG 4 cut(s) 30, 86, 176, 486
BssMI GATC 8 cut(s) 180, 337, 673, 754, 865, 979, 1008, 1270
BssNAI GTATAC 1 cut(s) 1018
BssT1I CCWWGG 3 cut(s) 30, 176, 486
Bst1107I GTATAC 1 cut(s) 1018
Bst2UI CCWGG 3 cut(s) 217, 1039, 1316
Bst4CI ACNGT 4 cut(s) 51, 229, 955, 1001
Bst6I CTCTTC 2 cut(s) 251, 657
BstAPI GCANNNNNTGC 2 cut(s) 364, 1307
BstBAI YACGTR 1 cut(s) 65
BstC8I GCNNGC 7 cut(s) 442, 710, 830, 921, 930, 1104, 1170
BstDEI CTNAG 3 cut(s) 500, 726, 1201
BstF5I GGATG 3 cut(s) 469, 1147, 1211
BstKTI GATC 8 cut(s) 183, 340, 676, 757, 868, 982, 1011, 1273
BstMAI GTCTC 4 cut(s) 57, 76, 699, 1095
BstMBI GATC 8 cut(s) 180, 337, 673, 754, 865, 979, 1008, 1270
BstMWI GCNNNNNNNGC 7 cut(s) 364, 373, 749, 925, 929, 1120, 1307
BstNI CCWGG 3 cut(s) 217, 1039, 1316
BstNSI RCATGY 2 cut(s) 295, 712
BstSCI CCNGG 3 cut(s) 215, 1037, 1314
BstSFI CTRYAG 1 cut(s) 1166
BstSLI GKGCMC 1 cut(s) 1303
BstSNI TACGTA 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 1294
BstV2I GAAGAC 1 cut(s) 128
BstX2I RGATCY 3 cut(s) 180, 979, 1270
BstYI RGATCY 3 cut(s) 180, 979, 1270
BstZ17I GTATAC 1 cut(s) 1018
BsuRI GGCC 5 cut(s) 347, 420, 497, 832, 919
BtsCI GGATG 3 cut(s) 469, 1147, 1211
BtsIMutI CAGTG 3 cut(s) 974, 1006, 1077
Cac8I GCNNGC 7 cut(s) 442, 710, 830, 921, 930, 1104, 1170
Cfr10I RCCGGY 1 cut(s) 584
Cfr13I GGNCC 4 cut(s) 213, 304, 496, 1183
CseI GACGC 1 cut(s) 1182
CsiI ACCWGGT 1 cut(s) 1314
Csp6I GTAC 3 cut(s) 517, 701, 823
CviAII CATG 8 cut(s) 292, 472, 510, 635, 709, 882, 1127, 1235
CviQI GTAC 3 cut(s) 517, 701, 823
DdeI CTNAG 3 cut(s) 500, 726, 1201
DpnI GATC 8 cut(s) 182, 339, 675, 756, 867, 981, 1010, 1272
DpnII GATC 8 cut(s) 180, 337, 673, 754, 865, 979, 1008, 1270
EaeI YGGCCR 3 cut(s) 345, 418, 830
Eam1104I CTCTTC 2 cut(s) 251, 657
EarI CTCTTC 2 cut(s) 251, 657
Eco105I TACGTA 1 cut(s) 65
Eco130I CCWWGG 3 cut(s) 30, 176, 486
Eco31I GGTCTC 2 cut(s) 76, 699
Eco32I GATATC 1 cut(s) 150
Eco47I GGWCC 3 cut(s) 213, 304, 1183
Eco57I CTGAAG 2 cut(s) 684, 782
Eco88I CYCGRG 1 cut(s) 118
EcoO109I RGGNCCY 1 cut(s) 213
EcoRI GAATTC 1 cut(s) 171
EcoRII CCWGG 3 cut(s) 215, 1037, 1314
EcoRV GATATC 1 cut(s) 150
EcoT14I CCWWGG 3 cut(s) 30, 176, 486
ErhI CCWWGG 3 cut(s) 30, 176, 486
Esp3I CGTCTC 1 cut(s) 57
FaeI CATG 8 cut(s) 295, 475, 513, 638, 712, 885, 1130, 1238
FalI AAGNNNNNCTT 2 cut(s) 697, 729
FaqI GGGAC 2 cut(s) 79, 949
FatI CATG 8 cut(s) 291, 471, 509, 634, 708, 881, 1126, 1234
FauNDI CATATG 1 cut(s) 323
FblI GTMKAC 1 cut(s) 1017
Fnu4HI GCNGC 1 cut(s) 1308
FokI GGATG 3 cut(s) 476, 1154, 1198
Fsp4HI GCNGC 1 cut(s) 1308
FspBI CTAG 7 cut(s) 36, 168, 177, 266, 402, 987, 1328
GluI GCNGC 1 cut(s) 1308
GsaI CCCAGC 1 cut(s) 1118
GsuI CTGGAG 1 cut(s) 430
HaeIII GGCC 5 cut(s) 347, 420, 497, 832, 919
HapII CCGG 2 cut(s) 348, 585
HgaI GACGC 1 cut(s) 1182
Hin1II CATG 8 cut(s) 295, 475, 513, 638, 712, 885, 1130, 1238
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HindIII AAGCTT 3 cut(s) 100, 602, 1121
HinfI GANTC 7 cut(s) 127, 160, 398, 545, 1082, 1088, 1259
HpaI GTTAAC 1 cut(s) 297
HpaII CCGG 2 cut(s) 348, 585
HphI GGTGA 2 cut(s) 56, 974
Hpy166II GTNNAC 4 cut(s) 47, 297, 1018, 1301
Hpy188I TCNGA 4 cut(s) 159, 455, 1087, 1264
Hpy188III TCNNGA 7 cut(s) 56, 140, 389, 869, 995, 1070, 1276
Hpy8I GTNNAC 4 cut(s) 47, 297, 1018, 1301
HpyAV CCTTC 3 cut(s) 792, 993, 1036
HpyCH4III ACNGT 4 cut(s) 51, 229, 955, 1001
HpyCH4IV ACGT 1 cut(s) 64
HpyF10VI GCNNNNNNNGC 7 cut(s) 364, 373, 749, 925, 929, 1120, 1307
HpyF3I CTNAG 3 cut(s) 500, 726, 1201
HpySE526I ACGT 1 cut(s) 64
Hsp92II CATG 8 cut(s) 295, 475, 513, 638, 712, 885, 1130, 1238
KspAI GTTAAC 1 cut(s) 297
Kzo9I GATC 8 cut(s) 180, 337, 673, 754, 865, 979, 1008, 1270
LmnI GCTCC 1 cut(s) 449
Lsp1109I GCAGC 1 cut(s) 1294
LweI GCATC 6 cut(s) 80, 454, 494, 597, 1024, 1132
MabI ACCWGGT 1 cut(s) 1314
MaeI CTAG 7 cut(s) 36, 168, 177, 266, 402, 987, 1328
MaeII ACGT 1 cut(s) 64
MaeIII GTNAC 6 cut(s) 229, 382, 622, 732, 949, 1070
MalI GATC 8 cut(s) 182, 339, 675, 756, 867, 981, 1010, 1272
MboI GATC 8 cut(s) 180, 337, 673, 754, 865, 979, 1008, 1270
MboII GAAGA 7 cut(s) 128, 238, 363, 404, 644, 1067, 1250
MfeI CAATTG 2 cut(s) 561, 897
MflI RGATCY 3 cut(s) 180, 979, 1270
MhlI GDGCHC 1 cut(s) 1303
MlsI TGGCCA 2 cut(s) 420, 832
MluCI AATT 9 cut(s) 171, 456, 561, 877, 897, 965, 1065, 1155, 1284
MluNI TGGCCA 2 cut(s) 420, 832
MlyI GAGTC 1 cut(s) 1097
MmeI TCCRAC 2 cut(s) 595, 829
Mox20I TGGCCA 2 cut(s) 420, 832
MroXI GAANNNNTTC 2 cut(s) 784, 1059
MscI TGGCCA 2 cut(s) 420, 832
MseI TTAA 4 cut(s) 296, 413, 528, 593
MslI CAYNNNNRTG 1 cut(s) 1239
Msp20I TGGCCA 2 cut(s) 420, 832
MspA1I CMGCKG 1 cut(s) 662
MspI CCGG 2 cut(s) 348, 585
MspR9I CCNGG 3 cut(s) 217, 1039, 1316
MunI CAATTG 2 cut(s) 561, 897
MvaI CCWGG 3 cut(s) 217, 1039, 1316
MwoI GCNNNNNNNGC 7 cut(s) 364, 373, 749, 925, 929, 1120, 1307
NdeI CATATG 1 cut(s) 323
NdeII GATC 8 cut(s) 180, 337, 673, 754, 865, 979, 1008, 1270
NlaIII CATG 8 cut(s) 295, 475, 513, 638, 712, 885, 1130, 1238
NlaIV GGNNCC 3 cut(s) 182, 445, 981
NmuCI GTSAC 2 cut(s) 949, 1070
NspI RCATGY 2 cut(s) 295, 712
PaeI GCATGC 1 cut(s) 712
PciI ACATGT 1 cut(s) 291
PdmI GAANNNNTTC 2 cut(s) 784, 1059
PfeI GAWTC 6 cut(s) 127, 160, 398, 545, 1082, 1259
PkrI GCNGC 1 cut(s) 1309
PleI GAGTC 1 cut(s) 1096
PpsI GAGTC 1 cut(s) 1096
Ppu21I YACGTR 1 cut(s) 65
PpuMI RGGWCCY 1 cut(s) 213
PscI ACATGT 1 cut(s) 291
Psp5II RGGWCCY 1 cut(s) 213
Psp6I CCWGG 3 cut(s) 215, 1037, 1314
PspFI CCCAGC 1 cut(s) 1114
PspGI CCWGG 3 cut(s) 215, 1037, 1314
PspN4I GGNNCC 3 cut(s) 182, 445, 981
PspPI GGNCC 4 cut(s) 213, 304, 496, 1183
PspPPI RGGWCCY 1 cut(s) 213
PstI CTGCAG 1 cut(s) 1170
PsuI RGATCY 3 cut(s) 180, 979, 1270
PvuII CAGCTG 1 cut(s) 662
RsaI GTAC 3 cut(s) 518, 702, 824
RsaNI GTAC 3 cut(s) 517, 701, 823
RseI CAYNNNNRTG 1 cut(s) 1239
SaqAI TTAA 4 cut(s) 296, 413, 528, 593
SatI GCNGC 1 cut(s) 1308
Sau3AI GATC 8 cut(s) 180, 337, 673, 754, 865, 979, 1008, 1270
Sau96I GGNCC 4 cut(s) 213, 304, 496, 1183
SchI GAGTC 1 cut(s) 1097
ScrFI CCNGG 3 cut(s) 217, 1039, 1316
SduI GDGCHC 1 cut(s) 1303
SexAI ACCWGGT 1 cut(s) 1314
SfaNI GCATC 6 cut(s) 80, 454, 494, 597, 1024, 1132
SfcI CTRYAG 1 cut(s) 1166
SinI GGWCC 3 cut(s) 213, 304, 1183
SmiMI CAYNNNNRTG 1 cut(s) 1239
SmlI CTYRAG 3 cut(s) 54, 197, 696
SmoI CTYRAG 3 cut(s) 54, 197, 696
SnaBI TACGTA 1 cut(s) 65
SphI GCATGC 1 cut(s) 712
Sse9I AATT 9 cut(s) 171, 456, 561, 877, 897, 965, 1065, 1155, 1284
SsiI CCGC 2 cut(s) 461, 514
SspMI CTAG 7 cut(s) 36, 168, 177, 266, 402, 987, 1328
StyD4I CCNGG 3 cut(s) 215, 1037, 1314
StyI CCWWGG 3 cut(s) 30, 176, 486
TaaI ACNGT 4 cut(s) 51, 229, 955, 1001
TaiI ACGT 1 cut(s) 67
TaqI TCGA 1 cut(s) 209
TaqII GACCGA 1 cut(s) 100
TasI AATT 9 cut(s) 171, 456, 561, 877, 897, 965, 1065, 1155, 1284
TatI WGTACW 1 cut(s) 822
TfiI GAWTC 6 cut(s) 127, 160, 398, 545, 1082, 1259
Tru1I TTAA 4 cut(s) 296, 413, 528, 593
Tru9I TTAA 4 cut(s) 296, 413, 528, 593
TscAI CASTG 3 cut(s) 981, 1006, 1084
TseFI GTSAC 2 cut(s) 949, 1070
TseI GCWGC 1 cut(s) 1307
Tsp45I GTSAC 2 cut(s) 949, 1070
TspDTI ATGAA 8 cut(s) 206, 411, 734, 777, 870, 1115, 1200, 1251
TspRI CASTG 3 cut(s) 981, 1006, 1084
VneI GTGCAC 1 cut(s) 1299
VpaK11BI GGWCC 3 cut(s) 213, 304, 1183
XapI RAATTY 2 cut(s) 171, 877
XceI RCATGY 2 cut(s) 295, 712
XmaJI CCTAGG 1 cut(s) 176
XmiI GTMKAC 1 cut(s) 1017
XmnI GAANNNNTTC 2 cut(s) 784, 1059
XspI CTAG 7 cut(s) 36, 168, 177, 266, 402, 987, 1328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.