Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004200.1

Orthogroup ID

OG0012625

Physical Location & Seq

Genomic Coordinates Forward (+)

21808 .. 23238

Gene Structure 1431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004200.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1431 bp

atgggggctatattgagtttgaacaattctaggactagggagagtggacctcatggggtttcacagagtgaaacacgcaagaggcagaggttgtcttcatgcctttatgaggaaaacccgagattgattcccagtcttcctgacgagatatctattcagattcttgccagaatacctaggatccactatttgaaattgaagatggtgtcacgtacatggaaaaccaccgtcatgaccgccgaacttttcaatttgagaaaagaactaggaacaacagaggaatggctctatgtattaacaaaggttgaaagtgataagctcatatggtatgctctggaccctctggccgcaaaatggcaaaggttgccaccaatgcctagtgtttgtcctgaagatgaatctaggagggctgtaactgctcgtagaatgtggaaaatggtaggttcaagtatcagacttgcggatgtcatcatgggctggcttggtcggaaggatgcactggatcgaatgcctttttgtggttgtgccgttggtgctgttgatggctgcctttatgtcctaggtggattttcaagggctacagccctatcatgtgcctggcggtataatccagttataaactcttggagtgaatcaactccaatgtcaatgggtagagcgtattgtaagacaggcattttaaacaataaactttatgttgttggaggggttactagaggacgtggtggattggcccctcttcaatcagctgaagtatttgatccaaaaacaggtatatggtcccaaataccaagcatgccctttgccaaagctcaggtgctaccaactgcatttttggctgatctgctcaagcctattgctaccgggatgacttcatacaaggggagattgtttgttccacaaagtttatactgctggccattttttgtggatgttggaggtgaggtttatgatccagaggtgaattcatggggtgatatgccaactggcatgggggagggttggcctgcaaggcaagcagggacgaaaatgagtgtcacagtcgatggtgaattgtatgcactggatccttctagttctcttgacaatgccaagatcaagttatacgattaccaagatgatgcttggaatgttgttgcagaagatgttccaattcgggactttactgaatcagagtctccctatttacttgctggtttccttgggaagcttcatgtgatcacgaaggatgccaataacaatgttgcagttctgcaggcttatgtgccgaaccgtcatgcttccacctcagcagcttcatcctcatcaccagatgatgcctctgaaatttctgaaccacaagcagagtcagaagtagatctttggaaggtcattgctacaaggagtgcacggactgctgaactggttagctgtctcgtccttgatctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

476

Amino Acids

52.62

Weight (kDa)

6.49

Isoelectric Point (pI)

53.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012625)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30861 FvH4_5g30861
malus_domestica	MD08G1221400.v1.1 MD15G1412100.v1.1
prunus_persica	Prupe.1G558500_v2.0.a1 Prupe.1G558500_v2.0.a1
pyrus_communis	pycom08g19200 pycom15g36690 pycom15g36700
rosa_chinensis	RchiOBHm_Chr7g0226051
rosa_laevigata	RLG00000001769
rosa_multiflora	Rmu_sc0004200.1_g000006
rosa_roxburghii	Rroxscaffold_3G00233290
rosa_rugosa	Rorug07G0234400
rosa_samantha	Rh7AG368600 Rh7BG368700 Rh7CG387200 Rh7DG379800
rosa_wichuraiana	Rw0G020920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	617
AciI	CCGC	4 cut(s)	237, 348, 461, 601
AclWI	GGATC	7 cut(s)	175, 188, 510, 755, 947, 1061, 1074
AcoI	YGGCCR	2 cut(s)	345, 917
AcsI	RAATTY	2 cut(s)	964, 1326
AcuI	CTGAAG	2 cut(s)	411, 771
AdeI	CACNNNGTG	1 cut(s)	68
AfaI	GTAC	1 cut(s)	214
AfiI	CCNNNNNNNGG	4 cut(s)	109, 354, 518, 770
AgsI	TTSAA	8 cut(s)	22, 193, 199, 250, 308, 447, 573, 743
AjiI	CACGTC	1 cut(s)	722
AjnI	CCWGG	1 cut(s)	596
AluBI	AGCT	6 cut(s)	319, 749, 812, 1210, 1295, 1410
AluI	AGCT	6 cut(s)	319, 749, 812, 1210, 1295, 1410
Alw21I	GWGCWC	1 cut(s)	1390
Alw26I	GTCTC	2 cut(s)	1182, 1418
Alw44I	GTGCAC	1 cut(s)	1386
AlwI	GGATC	7 cut(s)	175, 188, 510, 755, 947, 1061, 1074
Ama87I	CYCGRG	1 cut(s)	118
AoxI	GGCC	4 cut(s)	345, 732, 917, 1004
ApaLI	GTGCAC	1 cut(s)	1386
ApeKI	GCWGC	2 cut(s)	546, 1292
ApoI	RAATTY	2 cut(s)	964, 1326
Asp700I	GAANNNNTTC	1 cut(s)	1146
AspA2I	CCTAGG	2 cut(s)	176, 559
AspS9I	GGNCC	4 cut(s)	47, 337, 733, 780
AsuC2I	CCSGG	1 cut(s)	865
AsuHPI	GGTGA	5 cut(s)	953, 973, 986, 1061, 1299
AvaI	CYCGRG	1 cut(s)	118
AvaII	GGWCC	3 cut(s)	47, 337, 780
AvrII	CCTAGG	2 cut(s)	176, 559
BaeGI	GKGCMC	1 cut(s)	1390
BalI	TGGCCA	1 cut(s)	919
BamHI	GGATCC	2 cut(s)	180, 1066
BbsI	GAAGAC	2 cut(s)	87, 128
Bbv12I	GWGCWC	1 cut(s)	1390
BbvCI	CCTCAGC	1 cut(s)	1288
BbvI	GCAGC	2 cut(s)	533, 1304
BccI	CCATC	3 cut(s)	196, 536, 1040
BceAI	ACGGC	1 cut(s)	512
BciT130I	CCWGG	1 cut(s)	598
BclI	TGATCA	1 cut(s)	1218
BcnI	CCSGG	1 cut(s)	865
BcoDI	GTCTC	2 cut(s)	1182, 1418
BfaI	CTAG	9 cut(s)	30, 36, 177, 266, 378, 402, 560, 714, 1074
BfmI	CTRYAG	2 cut(s)	579, 1253
BglI	GCCNNNNNGGC	1 cut(s)	1012
BglII	AGATCT	1 cut(s)	1357
BisI	GCNGC	3 cut(s)	348, 547, 1293
BlnI	CCTAGG	2 cut(s)	176, 559
BlsI	GCNGC	3 cut(s)	349, 548, 1294
Bme1390I	CCNGG	2 cut(s)	598, 865
Bme18I	GGWCC	3 cut(s)	47, 337, 780
BmeT110I	CYCGRG	1 cut(s)	118
BmgBI	CACGTC	1 cut(s)	722
BmgT120I	GGNCC	4 cut(s)	47, 337, 733, 780
BmiI	GGNNCC	5 cut(s)	182, 339, 735, 782, 1068
BmrFI	CCNGG	2 cut(s)	598, 865
BmrI	ACTGGG	1 cut(s)	126
BmsI	GCATC	4 cut(s)	484, 1111, 1219, 1306
BmuI	ACTGGG	1 cut(s)	126
BpiI	GAAGAC	2 cut(s)	87, 128
BplI	GAGNNNNNCTC	2 cut(s)	34, 66
Bpu10I	CCTNAGC	2 cut(s)	813, 1288
BpuEI	CTTGAG	1 cut(s)	833
BpuMI	CCSGG	1 cut(s)	865
BsaAI	YACGTR	1 cut(s)	212
BsaJI	CCNNGG	3 cut(s)	176, 559, 1201
BsaXI	ACNNNNNCTCC	2 cut(s)	930, 960
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 354, 518, 770
Bse1I	ACTGG	6 cut(s)	132, 504, 611, 991, 1068, 1407
Bse3DI	GCAATG	1 cut(s)	1371
BseBI	CCWGG	1 cut(s)	598
BseDI	CCNNGG	3 cut(s)	176, 559, 1201
BseGI	GGATG	6 cut(s)	469, 499, 873, 937, 1234, 1298
BseLI	CCNNNNNNNGG	4 cut(s)	109, 354, 518, 770
BseMI	GCAATG	1 cut(s)	1371
BseMII	CTCAG	2 cut(s)	827, 1302
BseNI	ACTGG	6 cut(s)	132, 504, 611, 991, 1068, 1407
BseSI	GKGCMC	1 cut(s)	1390
BseXI	GCAGC	2 cut(s)	533, 1304
BshFI	GGCC	4 cut(s)	347, 734, 919, 1006
BsiHKAI	GWGCWC	1 cut(s)	1390
BsiHKCI	CYCGRG	1 cut(s)	118
BsiSI	CCGG	1 cut(s)	864
BslFI	GGGAC	3 cut(s)	766, 1036, 1172
BslI	CCNNNNNNNGG	4 cut(s)	109, 354, 518, 770
BsmAI	GTCTC	2 cut(s)	1182, 1418
BsmFI	GGGAC	3 cut(s)	766, 1036, 1172
BsmI	GAATGC	1 cut(s)	513
BsnI	GGCC	4 cut(s)	347, 734, 919, 1006
BsoBI	CYCGRG	1 cut(s)	118
Bsp1286I	GDGCHC	1 cut(s)	1390
BspACI	CCGC	4 cut(s)	237, 348, 461, 601
BspANI	GGCC	4 cut(s)	347, 734, 919, 1006
BspCNI	CTCAG	2 cut(s)	826, 1301
BspHI	TCATGA	1 cut(s)	231
BspLI	GGNNCC	5 cut(s)	182, 339, 735, 782, 1068
BspMAI	CTGCAG	1 cut(s)	1257
BspPI	GGATC	7 cut(s)	175, 188, 510, 755, 947, 1061, 1074
BsrDI	GCAATG	1 cut(s)	1371
BsrI	ACTGG	6 cut(s)	132, 504, 611, 991, 1068, 1407
BssECI	CCNNGG	3 cut(s)	176, 559, 1201
BssT1I	CCWWGG	3 cut(s)	176, 559, 1201
Bst2UI	CCWGG	1 cut(s)	598
Bst4CI	ACNGT	3 cut(s)	229, 1042, 1274
Bst6I	CTCTTC	1 cut(s)	744
BstAPI	GCANNNNNTGC	2 cut(s)	364, 1394
BstBAI	YACGTR	1 cut(s)	212
BstC8I	GCNNGC	6 cut(s)	479, 797, 917, 1008, 1017, 1257
BstDEI	CTNAG	2 cut(s)	813, 1288
BstENI	CCTNNNNNAGG	1 cut(s)	107
BstF5I	GGATG	6 cut(s)	469, 499, 873, 937, 1234, 1298
BstMAI	GTCTC	2 cut(s)	1182, 1418
BstMWI	GCNNNNNNNGC	8 cut(s)	364, 373, 416, 533, 836, 1012, 1016, 1394
BstNI	CCWGG	1 cut(s)	598
BstNSI	RCATGY	1 cut(s)	799
BstSCI	CCNGG	2 cut(s)	596, 863
BstSFI	CTRYAG	2 cut(s)	579, 1253
BstSLI	GKGCMC	1 cut(s)	1390
BstV1I	GCAGC	2 cut(s)	533, 1304
BstV2I	GAAGAC	2 cut(s)	87, 128
BstX2I	RGATCY	3 cut(s)	180, 1066, 1357
BstYI	RGATCY	3 cut(s)	180, 1066, 1357
BsuRI	GGCC	4 cut(s)	347, 734, 919, 1006
BtrI	CACGTC	1 cut(s)	722
BtsCI	GGATG	6 cut(s)	469, 499, 873, 937, 1234, 1298
BtsIMutI	CAGTG	2 cut(s)	497, 1061
Cac8I	GCNNGC	6 cut(s)	479, 797, 917, 1008, 1017, 1257
CciI	TCATGA	1 cut(s)	231
Cfr13I	GGNCC	4 cut(s)	47, 337, 733, 780
Csp6I	GTAC	1 cut(s)	213
CviQI	GTAC	1 cut(s)	213
DdeI	CTNAG	2 cut(s)	813, 1288
DraI	TTTAAA	1 cut(s)	681
DraIII	CACNNNGTG	1 cut(s)	68
EaeI	YGGCCR	2 cut(s)	345, 917
Eam1104I	CTCTTC	1 cut(s)	744
EarI	CTCTTC	1 cut(s)	744
Eco130I	CCWWGG	3 cut(s)	176, 559, 1201
Eco32I	GATATC	1 cut(s)	150
Eco47I	GGWCC	3 cut(s)	47, 337, 780
Eco57I	CTGAAG	2 cut(s)	411, 771
Eco88I	CYCGRG	1 cut(s)	118
EcoNI	CCTNNNNNAGG	1 cut(s)	107
EcoRI	GAATTC	1 cut(s)	964
EcoRII	CCWGG	1 cut(s)	596
EcoRV	GATATC	1 cut(s)	150
EcoT14I	CCWWGG	3 cut(s)	176, 559, 1201
ErhI	CCWWGG	3 cut(s)	176, 559, 1201
FalI	AAGNNNNNCTT	2 cut(s)	1344, 1376
FaqI	GGGAC	3 cut(s)	766, 1036, 1172
FauNDI	CATATG	1 cut(s)	323
FbaI	TGATCA	1 cut(s)	1218
Fnu4HI	GCNGC	3 cut(s)	348, 547, 1293
FokI	GGATG	6 cut(s)	476, 506, 880, 944, 1241, 1285
Fsp4HI	GCNGC	3 cut(s)	348, 547, 1293
FspBI	CTAG	9 cut(s)	30, 36, 177, 266, 378, 402, 560, 714, 1074
GluI	GCNGC	3 cut(s)	348, 547, 1293
HaeIII	GGCC	4 cut(s)	347, 734, 919, 1006
HapII	CCGG	1 cut(s)	864
HindIII	AAGCTT	1 cut(s)	1208
HinfI	GANTC	7 cut(s)	127, 160, 398, 632, 1169, 1175, 1346
HpaII	CCGG	1 cut(s)	864
HphI	GGTGA	5 cut(s)	953, 973, 986, 1061, 1299
Hpy166II	GTNNAC	2 cut(s)	47, 1388
Hpy188I	TCNGA	7 cut(s)	159, 455, 489, 1174, 1324, 1333, 1351
Hpy188III	TCNNGA	8 cut(s)	140, 232, 335, 389, 956, 1082, 1157, 1222
Hpy8I	GTNNAC	2 cut(s)	47, 1388
HpyAV	CCTTC	4 cut(s)	484, 1080, 1219, 1360
HpyCH4III	ACNGT	3 cut(s)	229, 1042, 1274
HpyCH4IV	ACGT	2 cut(s)	211, 721
HpyCH4V	TGCA	8 cut(s)	497, 830, 1010, 1061, 1139, 1247, 1255, 1388
HpyF10VI	GCNNNNNNNGC	8 cut(s)	364, 373, 416, 533, 836, 1012, 1016, 1394
HpyF3I	CTNAG	2 cut(s)	813, 1288
HpySE526I	ACGT	2 cut(s)	211, 721
Ksp22I	TGATCA	1 cut(s)	1218
Lsp1109I	GCAGC	2 cut(s)	533, 1304
LweI	GCATC	4 cut(s)	484, 1111, 1219, 1306
MaeI	CTAG	9 cut(s)	30, 36, 177, 266, 378, 402, 560, 714, 1074
MaeII	ACGT	2 cut(s)	211, 721
MaeIII	GTNAC	4 cut(s)	207, 412, 709, 1036
MboII	GAAGA	6 cut(s)	87, 128, 211, 404, 731, 1154
MflI	RGATCY	3 cut(s)	180, 1066, 1357
MhlI	GDGCHC	1 cut(s)	1390
MlsI	TGGCCA	1 cut(s)	919
MluCI	AATT	7 cut(s)	25, 194, 250, 964, 1052, 1152, 1326
MluNI	TGGCCA	1 cut(s)	919
MlyI	GAGTC	2 cut(s)	1184, 1355
MmeI	TCCRAC	3 cut(s)	467, 682, 916
Mox20I	TGGCCA	1 cut(s)	919
MroXI	GAANNNNTTC	1 cut(s)	1146
MscI	TGGCCA	1 cut(s)	919
MseI	TTAA	2 cut(s)	296, 680
MslI	CAYNNNNRTG	2 cut(s)	214, 230
Msp20I	TGGCCA	1 cut(s)	919
MspA1I	CMGCKG	1 cut(s)	749
MspI	CCGG	1 cut(s)	864
MspR9I	CCNGG	2 cut(s)	598, 865
Mva1269I	GAATGC	1 cut(s)	513
MvaI	CCWGG	1 cut(s)	598
MwoI	GCNNNNNNNGC	8 cut(s)	364, 373, 416, 533, 836, 1012, 1016, 1394
NciI	CCSGG	1 cut(s)	865
NdeI	CATATG	1 cut(s)	323
NlaIV	GGNNCC	5 cut(s)	182, 339, 735, 782, 1068
NmuCI	GTSAC	2 cut(s)	207, 1036
NspI	RCATGY	1 cut(s)	799
PaeI	GCATGC	1 cut(s)	799
PagI	TCATGA	1 cut(s)	231
PctI	GAATGC	1 cut(s)	513
PdmI	GAANNNNTTC	1 cut(s)	1146
PfeI	GAWTC	5 cut(s)	127, 160, 398, 632, 1169
PkrI	GCNGC	3 cut(s)	349, 548, 1294
PleI	GAGTC	2 cut(s)	1183, 1354
PpsI	GAGTC	2 cut(s)	1183, 1354
Ppu21I	YACGTR	1 cut(s)	212
PsiI	TTATAA	1 cut(s)	617
Psp6I	CCWGG	1 cut(s)	596
PspGI	CCWGG	1 cut(s)	596
PspN4I	GGNNCC	5 cut(s)	182, 339, 735, 782, 1068
PspPI	GGNCC	4 cut(s)	47, 337, 733, 780
PstI	CTGCAG	1 cut(s)	1257
PsuI	RGATCY	3 cut(s)	180, 1066, 1357
PvuII	CAGCTG	1 cut(s)	749
RsaI	GTAC	1 cut(s)	214
RsaNI	GTAC	1 cut(s)	213
RseI	CAYNNNNRTG	2 cut(s)	214, 230
SaqAI	TTAA	2 cut(s)	296, 680
SatI	GCNGC	3 cut(s)	348, 547, 1293
Sau96I	GGNCC	4 cut(s)	47, 337, 733, 780
SchI	GAGTC	2 cut(s)	1184, 1355
ScrFI	CCNGG	2 cut(s)	598, 865
SduI	GDGCHC	1 cut(s)	1390
SfaNI	GCATC	4 cut(s)	484, 1111, 1219, 1306
SfcI	CTRYAG	2 cut(s)	579, 1253
SinI	GGWCC	3 cut(s)	47, 337, 780
SmiMI	CAYNNNNRTG	2 cut(s)	214, 230
SmlI	CTYRAG	1 cut(s)	848
SmoI	CTYRAG	1 cut(s)	848
SphI	GCATGC	1 cut(s)	799
Sse9I	AATT	7 cut(s)	25, 194, 250, 964, 1052, 1152, 1326
SsiI	CCGC	4 cut(s)	237, 348, 461, 601
SspMI	CTAG	9 cut(s)	30, 36, 177, 266, 378, 402, 560, 714, 1074
StyD4I	CCNGG	2 cut(s)	596, 863
StyI	CCWWGG	3 cut(s)	176, 559, 1201
TaaI	ACNGT	3 cut(s)	229, 1042, 1274
TaiI	ACGT	2 cut(s)	214, 724
TaqI	TCGA	2 cut(s)	505, 1044
TasI	AATT	7 cut(s)	25, 194, 250, 964, 1052, 1152, 1326
TauI	GCSGC	1 cut(s)	350
TfiI	GAWTC	5 cut(s)	127, 160, 398, 632, 1169
Tru1I	TTAA	2 cut(s)	296, 680
Tru9I	TTAA	2 cut(s)	296, 680
TscAI	CASTG	2 cut(s)	504, 1068
TseFI	GTSAC	2 cut(s)	207, 1036
TseI	GCWGC	2 cut(s)	546, 1292
Tsp45I	GTSAC	2 cut(s)	207, 1036
TspDTI	ATGAA	6 cut(s)	87, 411, 864, 957, 1202, 1287
TspGWI	ACGGA	1 cut(s)	1405
TspRI	CASTG	2 cut(s)	504, 1068
VneI	GTGCAC	1 cut(s)	1386
VpaK11BI	GGWCC	3 cut(s)	47, 337, 780
XagI	CCTNNNNNAGG	1 cut(s)	107
XapI	RAATTY	2 cut(s)	964, 1326
XceI	RCATGY	1 cut(s)	799
XmaJI	CCTAGG	2 cut(s)	176, 559
XmnI	GAANNNNTTC	1 cut(s)	1146
XspI	CTAG	9 cut(s)	30, 36, 177, 266, 378, 402, 560, 714, 1074

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.