Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012625

Physical Location & Seq

Genomic Coordinates Forward (+)

45584338 .. 45588313

Gene Structure 3976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G558500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1431 bp

ATGGGGACTATTTTGAGCTTGAACCATTCCAGGACTAGAGGGAATGAACCTTATGAGGTTTTACAGAGTGCACCATGCAAGAGGCCAAGGTTGTCTTCAAGCTTTTATGAGAAAAACCCAAGATTGATTCCCTGCCTTCCTGACGAGATATCTATTCAGATTCTTTCCAGAATACCTAGGATCCACTATTTGAAATTGAAGTCGGTGTCAAGGACCTGGAAAGCCACTATTTTGAGTGCTGAACTTTTCTCTTTGAGAAAAGAGATGGGAACAACAGAGGAATGGCTTTATATATTAACAAAGGTCGCAAATGATAAGCTCATATGGTATGCTCTTGATCCTCTGGCCGGAAGATGGCAAAGGTTGCCACCAATGCCAAATGTTTCTCGTGAAGATGAATCTAGGAAGGGTTTAGCTGCCCTTAGAATGTGGAATATGGCAGGCTCAAGTATCAGGATTACAGATGTCATCATGGGTTGGCTTGGGAGGAAGGATGCAATGGATCAAATGCCATTTTGTGGTTGCTCTGTTGGGGCTGTTGATGGCTGCCTCTATGTGCTAGGGGGATTTTCCAAGGCTTCAGCCCTGAGATGTGCATGGCGATATAACCCAGTTACAAACTCTTGGAGTGAATCAAGTCCAATGTCAATTGGTAGAGCTTATTGTAAGACAGGCATCTTAGATGATAAGCTTTATGCTGTTGGAGGGGTTACTAGGGGTCATGGTGGATTGACCCCTCTTCAATCAGCTGAAGTATTTGATCCAAAAACAGGTGTGTGGTCCCAAATACCAAGCATGCCCTTTACGAAAGCTCAGGTCTTACCAACTGCATTTTTGGCTGATCTGCTCAAGCCTATTGCTACTGGATTGACTTCATACAGGGGAAGGTTGTTTGTTCCACAGAGTTTATACTGCTGGCCCTTTTTTGTTGATGTTGGAGGAGAGGTTTATGATCCAGAGGCGAATTCATGGGTTGAAATGCCAATTGGCTTGGGGGAGGGTTGGCCGGCAAGACAGGCAGGGACGAAAATGAGTGCCACTGTTGATGGTGAATTGTATGCACTGGATCCTTCTAGTTCTCCTGATAATGCGAAGATCAAGGTATACGATTACCTAGCTGATGATTGGAAAGTTGTTGCAGAAGATGTTCCAGTTCGTGACTTCACTGAATCAGAGTCTCCCTATTTGCTTGCTGGATTCCTTGGGAAGCTTCATGTGATCACAAAGGATGCCAATCGAAATATTGCTGTTCTGCAGGTGTATGTGCAGAATAATGTTGCTTCCATCTCAGCAGCTTCATCCTCATCACTCGTTGACCGCATTGAACATGCTGAACGACCAACAGAATCAGAACTAGATCTTTGGAAGGTAATTGCCACGAGGAGTGCACCGGCGGCTGAACTGGTTAGCTGTCTGGTCCTTGATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

477

Amino Acids

52.68

Weight (kDa)

6.95

Isoelectric Point (pI)

50.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012625)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30861 FvH4_5g30861
malus_domestica	MD08G1221400.v1.1 MD15G1412100.v1.1
prunus_persica	Prupe.1G558500_v2.0.a1 Prupe.1G558500_v2.0.a1
pyrus_communis	pycom08g19200 pycom15g36690 pycom15g36700
rosa_chinensis	RchiOBHm_Chr7g0226051
rosa_laevigata	RLG00000001769
rosa_multiflora	Rmu_sc0004200.1_g000006
rosa_roxburghii	Rroxscaffold_3G00233290
rosa_rugosa	Rorug07G0234400
rosa_samantha	Rh7AG368600 Rh7BG368700 Rh7CG387200 Rh7DG379800
rosa_wichuraiana	Rw0G020920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1246
Acc36I	ACCTGC	1 cut(s)	1246
AccB7I	CCANNNNNTGG	1 cut(s)	518
AccI	GTMKAC	1 cut(s)	1104
AciI	CCGC	2 cut(s)	1318, 1394
AclWI	GGATC	8 cut(s)	175, 188, 332, 510, 755, 947, 1061, 1074
AcoI	YGGCCR	2 cut(s)	345, 1004
AcsI	RAATTY	1 cut(s)	964
AcuI	CTGAAG	2 cut(s)	564, 771
AfiI	CCNNNNNNNGG	4 cut(s)	347, 354, 518, 770
AgsI	TTSAA	7 cut(s)	22, 99, 193, 199, 743, 977, 1325
AjnI	CCWGG	2 cut(s)	29, 215
AjuI	GAANNNNNNNTTGG	4 cut(s)	79, 111, 969, 1001
Alw21I	GWGCWC	2 cut(s)	73, 1390
Alw26I	GTCTC	1 cut(s)	1182
Alw44I	GTGCAC	2 cut(s)	69, 1386
AlwI	GGATC	8 cut(s)	175, 188, 332, 510, 755, 947, 1061, 1074
AoxI	GGCC	4 cut(s)	83, 345, 917, 1004
ApaLI	GTGCAC	2 cut(s)	69, 1386
ApeKI	GCWGC	3 cut(s)	416, 546, 1292
ApoI	RAATTY	1 cut(s)	964
Asp700I	GAANNNNTTC	1 cut(s)	1146
AspA2I	CCTAGG	1 cut(s)	176
AspS9I	GGNCC	4 cut(s)	213, 780, 918, 1417
AsuHPI	GGTGA	1 cut(s)	1061
AvaII	GGWCC	3 cut(s)	213, 780, 1417
AvrII	CCTAGG	1 cut(s)	176
BaeGI	GKGCMC	2 cut(s)	73, 1390
BamHI	GGATCC	2 cut(s)	180, 1066
BauI	CACGAG	2 cut(s)	387, 1378
BbsI	GAAGAC	1 cut(s)	87
Bbv12I	GWGCWC	2 cut(s)	73, 1390
BbvI	GCAGC	3 cut(s)	403, 533, 1304
BccI	CCATC	5 cut(s)	259, 348, 536, 1040, 1292
BciT130I	CCWGG	2 cut(s)	31, 217
BclI	TGATCA	1 cut(s)	1218
BcoDI	GTCTC	1 cut(s)	1182
BfaI	CTAG	8 cut(s)	36, 177, 402, 560, 714, 1074, 1115, 1355
BfmI	CTRYAG	1 cut(s)	1253
BfuAI	ACCTGC	1 cut(s)	1246
BglII	AGATCT	1 cut(s)	1357
BisI	GCNGC	4 cut(s)	417, 547, 1293, 1395
BlnI	CCTAGG	1 cut(s)	176
BlsI	GCNGC	4 cut(s)	418, 548, 1294, 1396
Bme1390I	CCNGG	2 cut(s)	31, 217
Bme18I	GGWCC	3 cut(s)	213, 780, 1417
BmgT120I	GGNCC	4 cut(s)	213, 780, 918, 1417
BmiI	GGNNCC	3 cut(s)	182, 782, 1068
BmrFI	CCNGG	2 cut(s)	31, 217
BmrI	ACTGGG	1 cut(s)	605
BmsI	GCATC	3 cut(s)	484, 684, 1219
BmuI	ACTGGG	1 cut(s)	605
BpiI	GAAGAC	1 cut(s)	87
Bpu10I	CCTNAGC	1 cut(s)	813
BpuEI	CTTGAG	2 cut(s)	430, 833
BsaBI	GATNNNNATC	1 cut(s)	1233
BsaJI	CCNNGG	4 cut(s)	86, 176, 573, 1201
BsaXI	ACNNNNNCTCC	2 cut(s)	930, 960
Bsc4I	CCNNNNNNNGG	4 cut(s)	347, 354, 518, 770
Bse118I	RCCGGY	2 cut(s)	1006, 1390
Bse1I	ACTGG	5 cut(s)	611, 868, 1068, 1151, 1407
Bse3DI	GCAATG	1 cut(s)	504
Bse8I	GATNNNNATC	1 cut(s)	1233
BseBI	CCWGG	2 cut(s)	31, 217
BseDI	CCNNGG	4 cut(s)	86, 176, 573, 1201
BseGI	GGATG	3 cut(s)	499, 1234, 1298
BseJI	GATNNNNATC	1 cut(s)	1233
BseLI	CCNNNNNNNGG	4 cut(s)	347, 354, 518, 770
BseMI	GCAATG	1 cut(s)	504
BseMII	CTCAG	3 cut(s)	578, 827, 1302
BseNI	ACTGG	5 cut(s)	611, 868, 1068, 1151, 1407
BseRI	GAGGAG	2 cut(s)	954, 1396
BseSI	GKGCMC	2 cut(s)	73, 1390
BseXI	GCAGC	3 cut(s)	403, 533, 1304
BsgI	GTGCAG	1 cut(s)	1286
BshFI	GGCC	4 cut(s)	85, 347, 919, 1006
BsiHKAI	GWGCWC	2 cut(s)	73, 1390
BsiSI	CCGG	3 cut(s)	348, 1007, 1391
BslFI	GGGAC	3 cut(s)	19, 766, 1036
BslI	CCNNNNNNNGG	4 cut(s)	347, 354, 518, 770
BsmAI	GTCTC	1 cut(s)	1182
BsmFI	GGGAC	3 cut(s)	19, 766, 1036
BsnI	GGCC	4 cut(s)	85, 347, 919, 1006
Bsp1286I	GDGCHC	2 cut(s)	73, 1390
BspACI	CCGC	2 cut(s)	1318, 1394
BspANI	GGCC	4 cut(s)	85, 347, 919, 1006
BspCNI	CTCAG	3 cut(s)	579, 826, 1301
BspLI	GGNNCC	3 cut(s)	182, 782, 1068
BspMAI	CTGCAG	1 cut(s)	1257
BspMI	ACCTGC	1 cut(s)	1246
BspPI	GGATC	8 cut(s)	175, 188, 332, 510, 755, 947, 1061, 1074
BsrDI	GCAATG	1 cut(s)	504
BsrFI	RCCGGY	2 cut(s)	1006, 1390
BsrI	ACTGG	5 cut(s)	611, 868, 1068, 1151, 1407
BssAI	RCCGGY	2 cut(s)	1006, 1390
BssECI	CCNNGG	4 cut(s)	86, 176, 573, 1201
BssNAI	GTATAC	1 cut(s)	1105
BssSI	CACGAG	2 cut(s)	387, 1378
BssT1I	CCWWGG	4 cut(s)	86, 176, 573, 1201
Bst1107I	GTATAC	1 cut(s)	1105
Bst2BI	CACGAG	2 cut(s)	387, 1378
Bst2UI	CCWGG	2 cut(s)	31, 217
Bst4CI	ACNGT	1 cut(s)	1042
Bst6I	CTCTTC	1 cut(s)	744
BstAPI	GCANNNNNTGC	1 cut(s)	364
BstC8I	GCNNGC	5 cut(s)	442, 797, 917, 1008, 1191
BstDEI	CTNAG	5 cut(s)	422, 587, 679, 813, 1288
BstF5I	GGATG	3 cut(s)	499, 1234, 1298
BstMAI	GTCTC	1 cut(s)	1182
BstMWI	GCNNNNNNNGC	5 cut(s)	364, 373, 836, 1016, 1394
BstNI	CCWGG	2 cut(s)	31, 217
BstNSI	RCATGY	2 cut(s)	799, 1331
BstSCI	CCNGG	2 cut(s)	29, 215
BstSFI	CTRYAG	1 cut(s)	1253
BstSLI	GKGCMC	2 cut(s)	73, 1390
BstV1I	GCAGC	3 cut(s)	403, 533, 1304
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	3 cut(s)	180, 1066, 1357
BstYI	RGATCY	3 cut(s)	180, 1066, 1357
BstZ17I	GTATAC	1 cut(s)	1105
BsuRI	GGCC	4 cut(s)	85, 347, 919, 1006
BtsCI	GGATG	3 cut(s)	499, 1234, 1298
BtsIMutI	CAGTG	3 cut(s)	1038, 1061, 1164
BveI	ACCTGC	1 cut(s)	1246
Cac8I	GCNNGC	5 cut(s)	442, 797, 917, 1008, 1191
Cfr10I	RCCGGY	2 cut(s)	1006, 1390
Cfr13I	GGNCC	4 cut(s)	213, 780, 918, 1417
CviAII	CATG	8 cut(s)	75, 472, 597, 722, 796, 969, 1214, 1328
DdeI	CTNAG	5 cut(s)	422, 587, 679, 813, 1288
EaeI	YGGCCR	2 cut(s)	345, 1004
Eam1104I	CTCTTC	1 cut(s)	744
EarI	CTCTTC	1 cut(s)	744
Eco130I	CCWWGG	4 cut(s)	86, 176, 573, 1201
Eco32I	GATATC	1 cut(s)	150
Eco47I	GGWCC	3 cut(s)	213, 780, 1417
Eco57I	CTGAAG	2 cut(s)	564, 771
EcoO109I	RGGNCCY	1 cut(s)	213
EcoRI	GAATTC	1 cut(s)	964
EcoRII	CCWGG	2 cut(s)	29, 215
EcoRV	GATATC	1 cut(s)	150
EcoT14I	CCWWGG	4 cut(s)	86, 176, 573, 1201
ErhI	CCWWGG	4 cut(s)	86, 176, 573, 1201
FaeI	CATG	8 cut(s)	78, 475, 600, 725, 799, 972, 1217, 1331
FalI	AAGNNNNNCTT	2 cut(s)	79, 111
FaqI	GGGAC	3 cut(s)	19, 766, 1036
FatI	CATG	8 cut(s)	74, 471, 596, 721, 795, 968, 1213, 1327
FauNDI	CATATG	1 cut(s)	323
FbaI	TGATCA	1 cut(s)	1218
FblI	GTMKAC	1 cut(s)	1104
Fnu4HI	GCNGC	4 cut(s)	417, 547, 1293, 1395
FokI	GGATG	3 cut(s)	506, 1241, 1285
Fsp4HI	GCNGC	4 cut(s)	417, 547, 1293, 1395
FspBI	CTAG	8 cut(s)	36, 177, 402, 560, 714, 1074, 1115, 1355
GluI	GCNGC	4 cut(s)	417, 547, 1293, 1395
HaeIII	GGCC	4 cut(s)	85, 347, 919, 1006
HapII	CCGG	3 cut(s)	348, 1007, 1391
Hin1II	CATG	8 cut(s)	78, 475, 600, 725, 799, 972, 1217, 1331
HincII	GTYRAC	1 cut(s)	1315
HindII	GTYRAC	1 cut(s)	1315
HindIII	AAGCTT	3 cut(s)	100, 689, 1208
HinfI	GANTC	8 cut(s)	127, 160, 398, 632, 1169, 1175, 1197, 1346
HpaII	CCGG	3 cut(s)	348, 1007, 1391
HphI	GGTGA	1 cut(s)	1061
Hpy166II	GTNNAC	4 cut(s)	71, 1105, 1315, 1388
Hpy188I	TCNGA	3 cut(s)	159, 1174, 1351
Hpy188III	TCNNGA	8 cut(s)	140, 168, 335, 389, 454, 956, 1082, 1157
Hpy8I	GTNNAC	4 cut(s)	71, 1105, 1315, 1388
HpyAV	CCTTC	6 cut(s)	146, 400, 484, 879, 1080, 1360
HpyCH4III	ACNGT	1 cut(s)	1042
HpyF10VI	GCNNNNNNNGC	5 cut(s)	364, 373, 836, 1016, 1394
HpyF3I	CTNAG	5 cut(s)	422, 587, 679, 813, 1288
Hsp92II	CATG	8 cut(s)	78, 475, 600, 725, 799, 972, 1217, 1331
KroI	GCCGGC	1 cut(s)	1006
KroNI	GCCGGC	1 cut(s)	1008
Ksp22I	TGATCA	1 cut(s)	1218
Lsp1109I	GCAGC	3 cut(s)	403, 533, 1304
LweI	GCATC	3 cut(s)	484, 684, 1219
MaeI	CTAG	8 cut(s)	36, 177, 402, 560, 714, 1074, 1115, 1355
MaeIII	GTNAC	3 cut(s)	613, 709, 1157
MboII	GAAGA	6 cut(s)	87, 363, 404, 731, 1105, 1154
MfeI	CAATTG	2 cut(s)	648, 984
MflI	RGATCY	3 cut(s)	180, 1066, 1357
MhlI	GDGCHC	2 cut(s)	73, 1390
MluCI	AATT	6 cut(s)	194, 648, 964, 984, 1052, 1371
MlyI	GAGTC	1 cut(s)	1184
MmeI	TCCRAC	2 cut(s)	682, 916
MroNI	GCCGGC	1 cut(s)	1006
MroXI	GAANNNNTTC	1 cut(s)	1146
MseI	TTAA	1 cut(s)	296
MspA1I	CMGCKG	1 cut(s)	749
MspI	CCGG	3 cut(s)	348, 1007, 1391
MspR9I	CCNGG	2 cut(s)	31, 217
MunI	CAATTG	2 cut(s)	648, 984
MvaI	CCWGG	2 cut(s)	31, 217
MwoI	GCNNNNNNNGC	5 cut(s)	364, 373, 836, 1016, 1394
NaeI	GCCGGC	1 cut(s)	1008
NdeI	CATATG	1 cut(s)	323
NgoMIV	GCCGGC	1 cut(s)	1006
NlaIII	CATG	8 cut(s)	78, 475, 600, 725, 799, 972, 1217, 1331
NlaIV	GGNNCC	3 cut(s)	182, 782, 1068
NmuCI	GTSAC	1 cut(s)	1157
NspI	RCATGY	2 cut(s)	799, 1331
PaeI	GCATGC	1 cut(s)	799
PaqCI	CACCTGC	1 cut(s)	1246
PdiI	GCCGGC	1 cut(s)	1008
PdmI	GAANNNNTTC	1 cut(s)	1146
PfeI	GAWTC	7 cut(s)	127, 160, 398, 632, 1169, 1197, 1346
PflMI	CCANNNNNTGG	1 cut(s)	518
PfoI	TCCNGGA	1 cut(s)	29
PkrI	GCNGC	4 cut(s)	418, 548, 1294, 1396
PleI	GAGTC	1 cut(s)	1183
PpsI	GAGTC	1 cut(s)	1183
PpuMI	RGGWCCY	1 cut(s)	213
Psp5II	RGGWCCY	1 cut(s)	213
Psp6I	CCWGG	2 cut(s)	29, 215
PspGI	CCWGG	2 cut(s)	29, 215
PspN4I	GGNNCC	3 cut(s)	182, 782, 1068
PspPI	GGNCC	4 cut(s)	213, 780, 918, 1417
PspPPI	RGGWCCY	1 cut(s)	213
PstI	CTGCAG	1 cut(s)	1257
PsuI	RGATCY	3 cut(s)	180, 1066, 1357
PvuII	CAGCTG	1 cut(s)	749
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	4 cut(s)	417, 547, 1293, 1395
Sau96I	GGNCC	4 cut(s)	213, 780, 918, 1417
SchI	GAGTC	1 cut(s)	1184
ScrFI	CCNGG	2 cut(s)	31, 217
SduI	GDGCHC	2 cut(s)	73, 1390
SfaNI	GCATC	3 cut(s)	484, 684, 1219
SfcI	CTRYAG	1 cut(s)	1253
SgrAI	CRCCGGYG	1 cut(s)	1390
SinI	GGWCC	3 cut(s)	213, 780, 1417
SmlI	CTYRAG	2 cut(s)	445, 848
SmoI	CTYRAG	2 cut(s)	445, 848
SphI	GCATGC	1 cut(s)	799
Sse9I	AATT	6 cut(s)	194, 648, 964, 984, 1052, 1371
SsiI	CCGC	2 cut(s)	1318, 1394
SspI	AATATT	1 cut(s)	1243
SspMI	CTAG	8 cut(s)	36, 177, 402, 560, 714, 1074, 1115, 1355
StyD4I	CCNGG	2 cut(s)	29, 215
StyI	CCWWGG	4 cut(s)	86, 176, 573, 1201
TaaI	ACNGT	1 cut(s)	1042
TaqI	TCGA	1 cut(s)	1237
TasI	AATT	6 cut(s)	194, 648, 964, 984, 1052, 1371
TauI	GCSGC	1 cut(s)	1397
TfiI	GAWTC	7 cut(s)	127, 160, 398, 632, 1169, 1197, 1346
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TscAI	CASTG	3 cut(s)	1045, 1068, 1171
TseFI	GTSAC	1 cut(s)	1157
TseI	GCWGC	3 cut(s)	416, 546, 1292
Tsp45I	GTSAC	1 cut(s)	1157
TspDTI	ATGAA	6 cut(s)	60, 411, 864, 957, 1202, 1287
TspRI	CASTG	3 cut(s)	1045, 1068, 1171
Van91I	CCANNNNNTGG	1 cut(s)	518
VneI	GTGCAC	2 cut(s)	69, 1386
VpaK11BI	GGWCC	3 cut(s)	213, 780, 1417
XapI	RAATTY	1 cut(s)	964
XceI	RCATGY	2 cut(s)	799, 1331
XmaJI	CCTAGG	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	1104
XmnI	GAANNNNTTC	1 cut(s)	1146
XspI	CTAG	8 cut(s)	36, 177, 402, 560, 714, 1074, 1115, 1355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.