Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0013167

Physical Location & Seq

Genomic Coordinates Reverse (-)

30053789 .. 30057841

Gene Structure 4053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1233900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGAGCACAGTCCGCCGGTGAGGCGAGCCAGTGCCAATGTGGTTAGTGTCGTCGCAAAATATGCAGTCCCGGCTGGAGAATGGCCGGATTTGTTGCCCTTTCTGTTTCAATGTAGTCAGAGTGCACAGGAAGAACATAGAGAGGTGGCATTGATCCTGTTCAGCTCTTTGACTGAAACAATAGGGAATACGTTTTGGCCACATTTCGCAGATTTGCAAGCTCAATGCCTGCAGGATGAGACAAGCAACTGTGTCAGAGTTGCTGCGCTCAAGGCCGTAGGGTCTTTTCTGGAATTCACTCATGATGGGGTTGAAGTGGTGAAATTTCGGGAATTCATACCTAGCATCTTAAATGTATCAAGACAATGCCTTGCAGCTGGCGAGGAGGATGTTGCTATTATTGCTTTTGAAATTTTTGATGAGTTGATTGAATCTCCAGCACCTCTTCTTGGTGAATCTGTTAAATCCATTGCAATTCAGATAGTTTCATGGCTAGCAAAGTATAAATCCAATTCCCTCAAAAAGCATAAGCTGGTCATCCCTATTCTGCAAGTTATGTGCCCATTGCTTGCAGAATCAAATGATGAAGATAAGGATGATGATCTTGCTCCAGATCGAGCTGCTGCAGAAGTTATTGATACTATGGCTTTGAACATACCAAAGCATGTTTTCCACCCTATCTTTGAATTTTCTTCTTTAAGCAGTAAAAATGCAAATCCAAAATATCAGGAAGCATCTGTTACCGCTTTAGGTGTAATTCAGAGGGTTGTTTGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0017038 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061608 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0140104 GO:0140142

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT IBN_N Vac14_Fab1_bd

Protein Analysis

260

Amino Acids

28.69

Weight (kDa)

5.02

Isoelectric Point (pI)

44.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_IPO5	PF25780	4 - 157	3.9e-29	IPO5-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27640
fragaria_vesca	FvH4_5g29150
malus_domestica	MD08G1233900.v1.1 MD08G1234100.v1.1 MD15G1425400.v1.1
prunus_persica	Prupe.1G571100_v2.0.a1 Prupe.1G571100_v2.0.a1
pyrus_communis	pycom08g20240 pycom15g37710
rosa_chinensis	RchiOBHm_Chr7g0221821
rosa_laevigata	RLG00000002119
rosa_multiflora	Rmu_sc0005834.1_g000014
rosa_roxburghii	Rroxscaffold_3G00237670
rosa_rugosa	Rorug07G0203600
rosa_samantha	Rh7BG335300 Rh7CG362100 Rh7DG342400
rosa_wichuraiana	Rw7G029220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	14, 744
AclWI	GGATC	1 cut(s)	148
AcoI	YGGCCR	2 cut(s)	83, 197
AcsI	RAATTY	5 cut(s)	293, 323, 332, 411, 686
AfiI	CCNNNNNNNGG	1 cut(s)	449
AgsI	TTSAA	6 cut(s)	110, 314, 410, 431, 652, 686
AluBI	AGCT	5 cut(s)	165, 221, 377, 532, 620
AluI	AGCT	5 cut(s)	165, 221, 377, 532, 620
Alw21I	GWGCWC	2 cut(s)	9, 127
Alw26I	GTCTC	1 cut(s)	233
Alw44I	GTGCAC	1 cut(s)	123
AlwI	GGATC	1 cut(s)	148
AoxI	GGCC	3 cut(s)	83, 197, 273
ApaLI	GTGCAC	1 cut(s)	123
ApeKI	GCWGC	4 cut(s)	263, 374, 620, 623
ApoI	RAATTY	5 cut(s)	293, 323, 332, 411, 686
AspLEI	GCGC	1 cut(s)	268
AsuC2I	CCSGG	1 cut(s)	71
AsuHPI	GGTGA	3 cut(s)	31, 331, 464
AsuNHI	GCTAGC	1 cut(s)	493
BaeGI	GKGCMC	2 cut(s)	127, 563
BalI	TGGCCA	1 cut(s)	199
Bbv12I	GWGCWC	2 cut(s)	9, 127
BbvI	GCAGC	4 cut(s)	250, 386, 607, 610
BccI	CCATC	1 cut(s)	299
BceAI	ACGGC	1 cut(s)	260
BcnI	CCSGG	1 cut(s)	71
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	2 cut(s)	342, 494
BfmI	CTRYAG	2 cut(s)	230, 624
BglI	GCCNNNNNGGC	1 cut(s)	22
BisI	GCNGC	4 cut(s)	264, 375, 621, 624
BlsI	GCNGC	4 cut(s)	265, 376, 622, 625
Bme1390I	CCNGG	1 cut(s)	71
BmrFI	CCNGG	1 cut(s)	71
BmsI	GCATC	2 cut(s)	354, 743
BmtI	GCTAGC	1 cut(s)	497
BpmI	CTGGAG	3 cut(s)	96, 420, 594
BpuEI	CTTGAG	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	600
Bsc4I	CCNNNNNNNGG	1 cut(s)	449
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	30
Bse3DI	GCAATG	2 cut(s)	468, 563
Bse8I	GATNNNNATC	1 cut(s)	600
BseGI	GGATG	4 cut(s)	241, 394, 537, 601
BseJI	GATNNNNATC	1 cut(s)	600
BseLI	CCNNNNNNNGG	1 cut(s)	449
BseMI	GCAATG	2 cut(s)	468, 563
BseNI	ACTGG	1 cut(s)	30
BseRI	GAGGAG	1 cut(s)	398
BseSI	GKGCMC	2 cut(s)	127, 563
BseXI	GCAGC	4 cut(s)	250, 386, 607, 610
BshFI	GGCC	3 cut(s)	85, 199, 275
BsiHKAI	GWGCWC	2 cut(s)	9, 127
BsiSI	CCGG	3 cut(s)	17, 71, 86
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	449
BsmAI	GTCTC	1 cut(s)	233
BsmFI	GGGAC	1 cut(s)	53
BsnI	GGCC	3 cut(s)	85, 199, 275
Bsp1286I	GDGCHC	3 cut(s)	9, 127, 563
Bsp143I	GATC	3 cut(s)	153, 601, 613
BspACI	CCGC	2 cut(s)	14, 744
BspANI	GGCC	3 cut(s)	85, 199, 275
BspHI	TCATGA	1 cut(s)	301
BspMAI	CTGCAG	2 cut(s)	234, 628
BspOI	GCTAGC	1 cut(s)	497
BspPI	GGATC	1 cut(s)	148
BsrDI	GCAATG	2 cut(s)	468, 563
BsrFI	RCCGGY	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	30
BssAI	RCCGGY	1 cut(s)	16
BssMI	GATC	3 cut(s)	153, 601, 613
Bst4CI	ACNGT	2 cut(s)	11, 251
Bst6I	CTCTTC	1 cut(s)	450
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstC8I	GCNNGC	6 cut(s)	27, 219, 230, 379, 495, 570
BstF5I	GGATG	4 cut(s)	241, 394, 537, 601
BstHHI	GCGC	1 cut(s)	268
BstKTI	GATC	3 cut(s)	156, 604, 616
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	3 cut(s)	153, 601, 613
BstMWI	GCNNNNNNNGC	6 cut(s)	13, 22, 62, 71, 272, 401
BstNSI	RCATGY	1 cut(s)	668
BstSCI	CCNGG	1 cut(s)	69
BstSFI	CTRYAG	2 cut(s)	230, 624
BstSLI	GKGCMC	2 cut(s)	127, 563
BstV1I	GCAGC	4 cut(s)	250, 386, 607, 610
BsuRI	GGCC	3 cut(s)	85, 199, 275
BtsCI	GGATG	4 cut(s)	241, 394, 537, 601
BtsIMutI	CAGTG	1 cut(s)	37
Cac8I	GCNNGC	6 cut(s)	27, 219, 230, 379, 495, 570
CciI	TCATGA	1 cut(s)	301
CfoI	GCGC	1 cut(s)	268
Cfr10I	RCCGGY	1 cut(s)	16
CviAII	CATG	3 cut(s)	302, 489, 665
DpnI	GATC	3 cut(s)	155, 603, 615
DpnII	GATC	3 cut(s)	153, 601, 613
EaeI	YGGCCR	2 cut(s)	83, 197
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
EcoRI	GAATTC	2 cut(s)	293, 332
FaeI	CATG	3 cut(s)	305, 492, 668
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	3 cut(s)	301, 488, 664
Fnu4HI	GCNGC	4 cut(s)	264, 375, 621, 624
FokI	GGATG	4 cut(s)	248, 401, 524, 608
Fsp4HI	GCNGC	4 cut(s)	264, 375, 621, 624
FspBI	CTAG	2 cut(s)	342, 494
GlaI	GCGC	1 cut(s)	267
GluI	GCNGC	4 cut(s)	264, 375, 621, 624
GsuI	CTGGAG	3 cut(s)	96, 420, 594
HaeIII	GGCC	3 cut(s)	85, 199, 275
HapII	CCGG	3 cut(s)	17, 71, 86
HhaI	GCGC	1 cut(s)	268
Hin1II	CATG	3 cut(s)	305, 492, 668
Hin6I	GCGC	1 cut(s)	266
HinP1I	GCGC	1 cut(s)	266
HinfI	GANTC	3 cut(s)	431, 455, 575
HpaII	CCGG	3 cut(s)	17, 71, 86
HphI	GGTGA	3 cut(s)	31, 331, 464
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	4 cut(s)	120, 257, 480, 762
Hpy188III	TCNNGA	6 cut(s)	290, 302, 329, 360, 611, 728
Hpy8I	GTNNAC	1 cut(s)	125
Hpy99I	CGWCG	1 cut(s)	56
HpyCH4III	ACNGT	2 cut(s)	11, 251
HpyCH4IV	ACGT	1 cut(s)	191
HpyF10VI	GCNNNNNNNGC	6 cut(s)	13, 22, 62, 71, 272, 401
HpySE526I	ACGT	1 cut(s)	191
Hsp92II	CATG	3 cut(s)	305, 492, 668
HspAI	GCGC	1 cut(s)	266
Kzo9I	GATC	3 cut(s)	153, 601, 613
LmnI	GCTCC	2 cut(s)	4, 613
Lsp1109I	GCAGC	4 cut(s)	250, 386, 607, 610
LweI	GCATC	2 cut(s)	354, 743
MaeI	CTAG	2 cut(s)	342, 494
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	1 cut(s)	739
MalI	GATC	3 cut(s)	155, 603, 615
MboI	GATC	3 cut(s)	153, 601, 613
MboII	GAAGA	4 cut(s)	143, 437, 599, 684
MhlI	GDGCHC	3 cut(s)	9, 127, 563
MlsI	TGGCCA	1 cut(s)	199
MluCI	AATT	8 cut(s)	293, 323, 332, 411, 474, 511, 686, 756
MluNI	TGGCCA	1 cut(s)	199
MnlI	CCTC	7 cut(s)	15, 136, 376, 379, 453, 527, 756
Mox20I	TGGCCA	1 cut(s)	199
MscI	TGGCCA	1 cut(s)	199
MseI	TTAA	3 cut(s)	350, 462, 698
Msp20I	TGGCCA	1 cut(s)	199
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	3 cut(s)	17, 71, 86
MspR9I	CCNGG	1 cut(s)	71
MwoI	GCNNNNNNNGC	6 cut(s)	13, 22, 62, 71, 272, 401
NciI	CCSGG	1 cut(s)	71
NdeII	GATC	3 cut(s)	153, 601, 613
NheI	GCTAGC	1 cut(s)	493
NlaIII	CATG	3 cut(s)	305, 492, 668
NspI	RCATGY	1 cut(s)	668
PagI	TCATGA	1 cut(s)	301
PfeI	GAWTC	3 cut(s)	431, 455, 575
PkrI	GCNGC	4 cut(s)	265, 376, 622, 625
PstI	CTGCAG	2 cut(s)	234, 628
PvuII	CAGCTG	1 cut(s)	377
SaqAI	TTAA	3 cut(s)	350, 462, 698
SatI	GCNGC	4 cut(s)	264, 375, 621, 624
Sau3AI	GATC	3 cut(s)	153, 601, 613
SbfI	CCTGCAGG	1 cut(s)	234
ScrFI	CCNGG	1 cut(s)	71
SdaI	CCTGCAGG	1 cut(s)	234
SduI	GDGCHC	3 cut(s)	9, 127, 563
SfaNI	GCATC	2 cut(s)	354, 743
SfcI	CTRYAG	2 cut(s)	230, 624
SgrAI	CRCCGGYG	1 cut(s)	16
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse8387I	CCTGCAGG	1 cut(s)	234
Sse9I	AATT	8 cut(s)	293, 323, 332, 411, 474, 511, 686, 756
SsiI	CCGC	2 cut(s)	14, 744
SspMI	CTAG	2 cut(s)	342, 494
StyD4I	CCNGG	1 cut(s)	69
TaaI	ACNGT	2 cut(s)	11, 251
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	1 cut(s)	616
TasI	AATT	8 cut(s)	293, 323, 332, 411, 474, 511, 686, 756
TfiI	GAWTC	3 cut(s)	431, 455, 575
Tru1I	TTAA	3 cut(s)	350, 462, 698
Tru9I	TTAA	3 cut(s)	350, 462, 698
TscAI	CASTG	1 cut(s)	37
TseI	GCWGC	4 cut(s)	263, 374, 620, 623
TspDTI	ATGAA	3 cut(s)	325, 477, 600
TspRI	CASTG	1 cut(s)	37
VneI	GTGCAC	1 cut(s)	123
XapI	RAATTY	5 cut(s)	293, 323, 332, 411, 686
XceI	RCATGY	1 cut(s)	668
XcmI	CCANNNNNNNNNTGG	1 cut(s)	37
XspI	CTAG	2 cut(s)	342, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.