Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0013167

Physical Location & Seq

Genomic Coordinates Reverse (-)

25378358 .. 25386949

Gene Structure 8592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00237670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3252 bp

ATGTCGCAGTCGCTGGAGCTACTGCTGATACAATTCCTGATGCCGGACAACGACGCCCGGCGGCAAGCGGAGGACCAGATTAAGCGGCTGGCCAAAGACCCTCAGGTGGTCCCCGCTCTCGTTCAACACCTCCGCACCGCCAAGACTCCCAACGTTCGCCAACTCGCCGCCGTTCTTCTCCGCAAGAAGATCACCGGCCACTGGGCCAAGCTCTCTCCTCAGCTCAAGAACCTCGTCAAGCAGTCCCTCATTGAGAGCATCACCATGGAGCACAGTCCACCGGTGAGGCGAGCCAGTGCTAATGTAGTTAGTGTCGTTGCGAAATATGCTGTCCCGGCTGGAGAATGGCCGGACTTGTTGCCCTTTCTGTTTCAATGTAGTCAGAGTGCGCAGGAGGAGCATAGAGAGGTGGCATTGATCCTTTTCAGCTCTTTGACTGAAACAATTGGGAATACGTTTCGACCACATTTCGCAGATTTGCAAGCTCTTCTTCTGAAATGCTTGCAGGATGAGACACAAGCAACCGTGTCAGAGTTGCTGCACTCAAAGGCTTTTACATATAATTCCAGGGCAGTGGGGTCTTTTCTAGAATTCACTCATGATGGGACTGAAGTGGTCAAGTTTCGAGAATTCATTCCCAGCATTTTAAATGTATCAAGACAATGCCTTGCTGCTGGCGAAGAGGATGTTGCTGTAATTGCTTTTGAGATTTTTGACGAGTTGATTGAATCTCCTGCACCTCTTCTTGGGGAGTCTATTAAATCCATTGTGCAGTTCTCTCTTGAAGTTTGCTCAAGTCAAACTTTGGAGTCTAACACTCGTCATCAGGCAATCCAAATAATCTCATGGCTAGCAAAGTATAAATCGAAATCCCTTAAAAAGTATAAGCTCATCATTCCTATTCTGCAAATTATGTGCCCATTGCTTGCCGAATCAACTAATGGAGATGAAGATGATGATCTTGCTCCGGATCGAGCTGCTGCAGAAGTTATTGACACTATGGCTTTGAATATACCGAAGCAAGTCTTCAGTCCTGTTCTCGAATTTGCTTCTTTAAGCAGTCAGAATGCAAATCCCAAGTATAGGGAAGCTTCTGTTACTGCTTTAGGTGTCATTTCAGAGGGTTGTTTGGATTTGATGAAAGATAAGATGGAACCAGTTCTTCATGTTGTTTTAGGTGCTTTGAGAGATCCTGAGGAAATGGTCAGGGGAGCTGCTTCCTTTGCCTTGGGTCAGTTTGCTGAGCATTTACAGCCTGAAATTGTATCTCACTATGAAAGTGTACTACCCTGCATTTTGAATGCCCTTGAGGATGCATCTGACGAAGTGAAGGTATCTATTAGTACTGGGTTAGAGTTTGGTTTTGAGTGTGGGGTTTTATTTTCTTTGTTTGGTGGCTTTTGCCTTTTCTTGTTTCTGGAAAAGTCATATTATGCTTTGGCTGCATTTTGTGAGAACATGGGTGAGGAAATACTTCCATTCCTTGATCCCTTAATGGGGAAACTACTAGGGGCTCTCCATAGTAGCCCTCGTAATTTGCAGGAGACATGCATGTCTGCAATAGGTTCAGTTGCTTCTGCTGCAGAACAAGCCTTCGTTCCATACGCCGAAAGGGTTTTGGAGTTGATGAAGAGTTTCTTGGTGCTTACTAATGATGAGGATCTTTGTTCACGAGCAAGAGCTACTGAATTAGTTGGAATAGTTGCGATGTCTGTGGGGAGAACTGGGATGGAACCGATTTTGCCCCCTTATATAGAAGCTGCAATTTCTGGTTTTGGATTGGAGTTTAGTGAGCTTCGGGAATATACTCATGGATTCTTCAGTAACGTCGCAGAAATTTTGGATGAAGGTTTTATACAGTATCTTCCTCATGTTGTCCCCCTGGCATTTTCCTCCTGCAATCTTGATGATGGCTCTGCAGTGGACATTGATGAGTCTGATGACGAAAATATTAATGGATTTGGTGGAGTTTCATCCGATGACGAAGCTCATGATGAACCAAGAGTACGAAATATCAGTGTAAGAACAGGAGTTTTGGATGAAAAGGCAGCTGCAACTCAAGCTCTTGGCTTATTTGCGCAGCATACAAAGACTTCATATGGACCCTATTTGGAGGAGTCATTGAAGATTCTAATTAGACACTCAGGCTATTTTCATGAAGATGTTCGGCTTCAGGCAATCATTGCCTTGAAACATATTTTAACAGCAGCACATGCAATATACCAGAATCATAATGAAGGAGAAGCAAAGGCTAAAGAAATACTAGATACTGTCATGAATATTTATATCAAGACTATGACTGAAGATGATGACAAGGAAGTGGTTGCTCAAGCTTGTATGAGCCTTGCTGACATCATCAAAGATTTTGGATATATGGCGATTGAACCCTATATGTCTCGGCTGGTCGATGCTACTTTGGTACTGCTTCAGGAGAAATCAGCTTGTCAGCAGATAGCATCTGATGATGAAATTGATGATGGTGATGTTGAACATGATGAACAGCTCATGGATGCAGTATCTGACCTGCTCCCTGCTTTTGCCAAGTCAATGGGTCCTCATTTTGCATCTAATTTTGCAAAACTTTTCGGCCCTTTAATGGAATTTGCGAGAGCTTCACGCCCGTTGCAAGATCGGACCATGGTTGTTGCCTGCCTTGCTGAAGTTGCTCAGAACATGGGTGCTCCAATTGCAGCATATGTCGATGTAAATGTGATGCCCTTGGTACTGAAGGAACTATCTTCCTCAGATTCAACCAATAGGAGGAATGCTGCATTTTGTGTTGGAGAGTTGTGCAGAAATGGGGATTCCAGATACTATGGAGATATATTACGTCGGCTTTCCCCACTATTTGGGGAATCTGAGCCAGATAATGCTGTCAGGGATAATGCAGCTGGTGCAGTTGCAAGAATGATAATGGTGCACCCCGAGCTTATCCCATTGAATGAGGTACTTCCTGTTTTTTTGAAAGTTCTTCCATTAAAAGAAGATCATGAGGAGTCCATGGCAGTGTACACTTGCATCTCTACTCTTGTTTTATCATCTAAGGCTGAGATTCTTTCTCTGGTCCCTGAGTTGGTCAATGTATTTGCTCAAGTTGTGGCATCACCACTTGAAACTACCGAGGTCAAAGCACATGTAGGCCGAGCTTTTTCTCACCTGATTTCAATCTATGGTCATCAAATGCAGCCCCTTCTGAACAATCTCTCCCCTCAACATGCCAATGCCCTTGCTGCATTTGCCCCCAAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0017038 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061608 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0140104 GO:0140142

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT IBN_N Vac14_Fab1_bd

Protein Analysis

1083

Amino Acids

119.06

Weight (kDa)

4.85

Isoelectric Point (pI)

48.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBN_N	PF03810	23 - 87	2.8e-15	Importin-beta N-terminal domain
TPR_IPO5	PF25780	93 - 259	4e-26	IPO5-like, TPR repeats
TOR1L1_N	PF24714	326 - 445	8e-06	TORTIFOLIA1 N-terminal
HEAT_EZ	PF13513	359 - 413	9.5e-08	HEAT-like repeat
TPR_IMB1	PF25574	480 - 639	2e-07	Importin subunit beta-1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27640
fragaria_vesca	FvH4_5g29150
malus_domestica	MD08G1233900.v1.1 MD08G1234100.v1.1 MD15G1425400.v1.1
prunus_persica	Prupe.1G571100_v2.0.a1 Prupe.1G571100_v2.0.a1
pyrus_communis	pycom08g20240 pycom15g37710
rosa_chinensis	RchiOBHm_Chr7g0221821
rosa_laevigata	RLG00000002119
rosa_multiflora	Rmu_sc0005834.1_g000014
rosa_roxburghii	Rroxscaffold_3G00237670
rosa_rugosa	Rorug07G0203600
rosa_samantha	Rh7BG335300 Rh7CG362100 Rh7DG342400
rosa_wichuraiana	Rw7G029220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1552
Acc16I	TGCGCA	2 cut(s)	390, 2079
Acc36I	ACCTGC	1 cut(s)	2532
AccB7I	CCANNNNNTGG	1 cut(s)	2849
AccBSI	CCGCTC	1 cut(s)	116
AccIII	TCCGGA	1 cut(s)	967
AciI	CCGC	8 cut(s)	61, 68, 85, 114, 133, 138, 168, 181
AclI	AACGTT	1 cut(s)	153
AclWI	GGATC	5 cut(s)	412, 978, 1184, 1481, 1668
AcoI	YGGCCR	3 cut(s)	90, 196, 347
AcsI	RAATTY	5 cut(s)	590, 629, 1043, 1836, 2600
AcuI	CTGAAG	8 cut(s)	630, 1012, 1804, 2156, 2322, 2411, 2679, 2747
AcyI	GRCGYC	1 cut(s)	54
AfaI	GTAC	7 cut(s)	1284, 1345, 2007, 2421, 2724, 2949, 3011
AflIII	ACRYGT	1 cut(s)	3133
AgeI	ACCGGT	1 cut(s)	280
AjnI	CCWGG	2 cut(s)	566, 1881
AjuI	GAANNNNNNNTTGG	2 cut(s)	1622, 1654
AloI	GAACNNNNNNTCC	2 cut(s)	3188, 3220
Alw21I	GWGCWC	3 cut(s)	273, 2683, 2922
Alw26I	GTCTC	3 cut(s)	506, 1538, 2400
Alw44I	GTGCAC	1 cut(s)	2918
AlwI	GGATC	5 cut(s)	412, 978, 1184, 1481, 1668
AlwNI	CAGNNNCTG	2 cut(s)	13, 2519
Ama87I	CYCGRG	1 cut(s)	2924
Aor13HI	TCCGGA	1 cut(s)	967
AoxI	GGCC	6 cut(s)	90, 196, 204, 347, 2587, 3139
ApaLI	GTGCAC	1 cut(s)	2918
ApoI	RAATTY	5 cut(s)	590, 629, 1043, 1836, 2600
AseI	ATTAAT	1 cut(s)	1953
AsiGI	ACCGGT	1 cut(s)	280
Asp700I	GAANNNNTTC	5 cut(s)	633, 1158, 1473, 1634, 2163
AspLEI	GCGC	2 cut(s)	391, 2080
AspS9I	GGNCC	8 cut(s)	73, 109, 204, 2102, 2552, 2588, 2634, 3064
AsuC2I	CCSGG	2 cut(s)	58, 335
AsuHPI	GGTGA	7 cut(s)	184, 253, 295, 1475, 2492, 3096, 3146
AsuNHI	GCTAGC	1 cut(s)	850
AvaI	CYCGRG	1 cut(s)	2924
AvaII	GGWCC	6 cut(s)	73, 109, 2102, 2552, 2634, 3064
AxyI	CCTNAGG	2 cut(s)	102, 1194
BaeGI	GKGCMC	2 cut(s)	920, 2922
BalI	TGGCCA	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	1516
BarI	GAAGNNNNNNTAC	2 cut(s)	1839, 1871
BauI	CACGAG	1 cut(s)	1671
BbsI	GAAGAC	1 cut(s)	1018
Bbv12I	GWGCWC	3 cut(s)	273, 2683, 2922
BbvCI	CCTCAGC	1 cut(s)	219
BccI	CCATC	5 cut(s)	596, 1144, 1723, 1904, 2471
BceAI	ACGGC	1 cut(s)	155
BciT130I	CCWGG	2 cut(s)	568, 1883
BcnI	CCSGG	2 cut(s)	58, 335
BcoDI	GTCTC	3 cut(s)	506, 1538, 2400
BfaI	CTAG	4 cut(s)	587, 851, 1508, 2264
BfmI	CTRYAG	3 cut(s)	981, 1581, 1917
BfuAI	ACCTGC	1 cut(s)	2532
BlpI	GCTNAGC	1 cut(s)	1242
BmcAI	AGTACT	1 cut(s)	1345
Bme1390I	CCNGG	4 cut(s)	58, 335, 568, 1883
Bme18I	GGWCC	6 cut(s)	73, 109, 2102, 2552, 2634, 3064
BmeT110I	CYCGRG	1 cut(s)	2924
BmgT120I	GGNCC	8 cut(s)	73, 109, 204, 2102, 2552, 2588, 2634, 3064
BmiI	GGNNCC	6 cut(s)	111, 1155, 1734, 2104, 2553, 3066
BmrFI	CCNGG	4 cut(s)	58, 335, 568, 1883
BmrI	ACTGGG	3 cut(s)	211, 1356, 1734
BmtI	GCTAGC	1 cut(s)	854
BmuI	ACTGGG	3 cut(s)	211, 1356, 1734
BpiI	GAAGAC	1 cut(s)	1018
BpmI	CTGGAG	2 cut(s)	35, 360
Bpu10I	CCTNAGC	1 cut(s)	219
Bpu1102I	GCTNAGC	1 cut(s)	1242
BpuEI	CTTGAG	6 cut(s)	209, 778, 1328, 2043, 2313, 3075
BpuMI	CCSGG	2 cut(s)	58, 335
BsaBI	GATNNNNATC	3 cut(s)	957, 1659, 3164
BsaHI	GRCGYC	1 cut(s)	54
BsaJI	CCNNGG	8 cut(s)	264, 567, 1227, 1881, 2637, 2718, 3000, 3120
BsaWI	WCCGGW	2 cut(s)	280, 967
BsaXI	ACNNNNNCTCC	2 cut(s)	3188, 3218
Bse118I	RCCGGY	2 cut(s)	194, 280
Bse1I	ACTGG	5 cut(s)	206, 294, 1157, 1351, 1729
Bse21I	CCTNAGG	2 cut(s)	102, 1194
Bse3DI	GCAATG	2 cut(s)	920, 2181
Bse8I	GATNNNNATC	3 cut(s)	957, 1659, 3164
BseAI	TCCGGA	1 cut(s)	967
BseBI	CCWGG	2 cut(s)	568, 1883
BseDI	CCNNGG	8 cut(s)	264, 567, 1227, 1881, 2637, 2718, 3000, 3120
BseGI	GGATG	8 cut(s)	514, 691, 1318, 1734, 1849, 1973, 2044, 2515
BseJI	GATNNNNATC	3 cut(s)	957, 1659, 3164
BseMI	GCAATG	2 cut(s)	920, 2181
BseNI	ACTGG	5 cut(s)	206, 294, 1157, 1351, 1729
BseRI	GAGGAG	4 cut(s)	207, 410, 2129, 3008
BseSI	GKGCMC	2 cut(s)	920, 2922
BseYI	CCCAGC	1 cut(s)	638
BsgI	GTGCAG	5 cut(s)	524, 720, 791, 2812, 2916
BshFI	GGCC	6 cut(s)	92, 198, 206, 349, 2589, 3141
BshTI	ACCGGT	1 cut(s)	280
BsiHKAI	GWGCWC	3 cut(s)	273, 2683, 2922
BsiHKCI	CYCGRG	1 cut(s)	2924
BsiSI	CCGG	7 cut(s)	44, 58, 195, 281, 335, 350, 968
BslFI	GGGAC	6 cut(s)	95, 229, 317, 619, 1862, 3050
BsmAI	GTCTC	3 cut(s)	506, 1538, 2400
BsmFI	GGGAC	6 cut(s)	95, 229, 317, 619, 1862, 3050
BsmI	GAATGC	3 cut(s)	1072, 1306, 2770
BsnI	GGCC	6 cut(s)	92, 198, 206, 349, 2589, 3141
BsoBI	CYCGRG	1 cut(s)	2924
Bsp1286I	GDGCHC	5 cut(s)	273, 920, 1516, 2683, 2922
Bsp13I	TCCGGA	1 cut(s)	967
Bsp1407I	TGTACA	1 cut(s)	3009
Bsp143I	GATC	9 cut(s)	189, 417, 958, 970, 1189, 1486, 1660, 2629, 2986
Bsp1720I	GCTNAGC	1 cut(s)	1242
Bsp19I	CCATGG	3 cut(s)	264, 2637, 3000
BspACI	CCGC	8 cut(s)	61, 68, 85, 114, 133, 138, 168, 181
BspANI	GGCC	6 cut(s)	92, 198, 206, 349, 2589, 3141
BspEI	TCCGGA	1 cut(s)	967
BspHI	TCATGA	5 cut(s)	598, 1990, 2155, 2274, 2989
BspLI	GGNNCC	6 cut(s)	111, 1155, 1734, 2104, 2553, 3066
BspMAI	CTGCAG	3 cut(s)	985, 1585, 1921
BspMI	ACCTGC	1 cut(s)	2532
BspOI	GCTAGC	1 cut(s)	854
BspPI	GGATC	5 cut(s)	412, 978, 1184, 1481, 1668
BspQI	GCTCTTC	1 cut(s)	492
BsrBI	CCGCTC	1 cut(s)	116
BsrDI	GCAATG	2 cut(s)	920, 2181
BsrFI	RCCGGY	2 cut(s)	194, 280
BsrGI	TGTACA	1 cut(s)	3009
BsrI	ACTGG	5 cut(s)	206, 294, 1157, 1351, 1729
BssAI	RCCGGY	2 cut(s)	194, 280
BssECI	CCNNGG	8 cut(s)	264, 567, 1227, 1881, 2637, 2718, 3000, 3120
BssMI	GATC	9 cut(s)	189, 417, 958, 970, 1189, 1486, 1660, 2629, 2986
BssNI	GRCGYC	1 cut(s)	54
BssSI	CACGAG	1 cut(s)	1671
BssT1I	CCWWGG	5 cut(s)	264, 1227, 2637, 2718, 3000
Bst2BI	CACGAG	1 cut(s)	1671
Bst2UI	CCWGG	2 cut(s)	568, 1883
Bst4CI	ACNGT	4 cut(s)	275, 526, 1860, 2272
Bst6I	CTCTTC	4 cut(s)	492, 675, 747, 1625
BstACI	GRCGYC	1 cut(s)	54
BstAPI	GCANNNNNTGC	3 cut(s)	2183, 2213, 2894
BstAUI	TGTACA	1 cut(s)	3009
BstC8I	GCNNGC	9 cut(s)	66, 90, 291, 483, 503, 676, 852, 927, 2650
BstDSI	CCRYGG	3 cut(s)	264, 2637, 3000
BstF5I	GGATG	8 cut(s)	514, 691, 1318, 1734, 1849, 1973, 2044, 2515
BstHHI	GCGC	2 cut(s)	391, 2080
BstKTI	GATC	9 cut(s)	192, 420, 961, 973, 1192, 1489, 1663, 2632, 2989
BstMAI	GTCTC	3 cut(s)	506, 1538, 2400
BstMBI	GATC	9 cut(s)	189, 417, 958, 970, 1189, 1486, 1660, 2629, 2986
BstNI	CCWGG	2 cut(s)	568, 1883
BstNSI	RCATGY	5 cut(s)	1551, 1555, 2216, 3137, 3218
BstSCI	CCNGG	4 cut(s)	56, 333, 566, 1881
BstSFI	CTRYAG	3 cut(s)	981, 1581, 1917
BstSLI	GKGCMC	2 cut(s)	920, 2922
BstV2I	GAAGAC	1 cut(s)	1018
BstX2I	RGATCY	2 cut(s)	1189, 1660
BstXI	CCANNNNNNTGG	2 cut(s)	574, 2548
BstYI	RGATCY	2 cut(s)	1189, 1660
Bsu36I	CCTNAGG	2 cut(s)	102, 1194
BsuRI	GGCC	6 cut(s)	92, 198, 206, 349, 2589, 3141
BtgI	CCRYGG	3 cut(s)	264, 2637, 3000
BtgZI	GCGATG	1 cut(s)	1721
BtsCI	GGATG	8 cut(s)	514, 691, 1318, 1734, 1849, 1973, 2044, 2515
BtsI	GCAGTG	3 cut(s)	579, 1926, 3012
BtsIMutI	CAGTG	6 cut(s)	199, 301, 579, 1926, 2023, 3012
BveI	ACCTGC	1 cut(s)	2532
Cac8I	GCNNGC	9 cut(s)	66, 90, 291, 483, 503, 676, 852, 927, 2650
CaiI	CAGNNNCTG	2 cut(s)	13, 2519
CciI	TCATGA	5 cut(s)	598, 1990, 2155, 2274, 2989
CfoI	GCGC	2 cut(s)	391, 2080
Cfr10I	RCCGGY	2 cut(s)	194, 280
Cfr13I	GGNCC	8 cut(s)	73, 109, 204, 2102, 2552, 2588, 2634, 3064
CseI	GACGC	1 cut(s)	62
Csp6I	GTAC	7 cut(s)	1283, 1344, 2006, 2420, 2723, 2948, 3010
CspAI	ACCGGT	1 cut(s)	280
CviQI	GTAC	7 cut(s)	1283, 1344, 2006, 2420, 2723, 2948, 3010
DpnI	GATC	9 cut(s)	191, 419, 960, 972, 1191, 1488, 1662, 2631, 2988
DpnII	GATC	9 cut(s)	189, 417, 958, 970, 1189, 1486, 1660, 2629, 2986
DraI	TTTAAA	1 cut(s)	648
DrdI	GACNNNNNNGTC	1 cut(s)	1552
DseDI	GACNNNNNNGTC	1 cut(s)	1552
EaeI	YGGCCR	3 cut(s)	90, 196, 347
Eam1104I	CTCTTC	4 cut(s)	492, 675, 747, 1625
EarI	CTCTTC	4 cut(s)	492, 675, 747, 1625
Eco130I	CCWWGG	5 cut(s)	264, 1227, 2637, 2718, 3000
Eco24I	GRGCYC	1 cut(s)	1516
Eco47I	GGWCC	6 cut(s)	73, 109, 2102, 2552, 2634, 3064
Eco57I	CTGAAG	8 cut(s)	630, 1012, 1804, 2156, 2322, 2411, 2679, 2747
Eco81I	CCTNAGG	2 cut(s)	102, 1194
Eco88I	CYCGRG	1 cut(s)	2924
EcoO109I	RGGNCCY	1 cut(s)	2552
EcoRI	GAATTC	2 cut(s)	590, 629
EcoRII	CCWGG	2 cut(s)	566, 1881
EcoT14I	CCWWGG	5 cut(s)	264, 1227, 2637, 2718, 3000
EcoT22I	ATGCAT	2 cut(s)	1318, 1553
EcoT38I	GRGCYC	1 cut(s)	1516
ErhI	CCWWGG	5 cut(s)	264, 1227, 2637, 2718, 3000
FalI	AAGNNNNNCTT	8 cut(s)	474, 506, 787, 819, 1010, 1042, 1622, 1654
FaqI	GGGAC	6 cut(s)	95, 229, 317, 619, 1862, 3050
FauI	CCCGC	1 cut(s)	121
FauNDI	CATATG	2 cut(s)	2098, 2695
FokI	GGATG	8 cut(s)	521, 698, 1325, 1741, 1856, 1960, 2051, 2522
FriOI	GRGCYC	1 cut(s)	1516
FspBI	CTAG	4 cut(s)	587, 851, 1508, 2264
FspI	TGCGCA	2 cut(s)	390, 2079
GlaI	GCGC	2 cut(s)	390, 2079
GsaI	CCCAGC	1 cut(s)	642
GsuI	CTGGAG	2 cut(s)	35, 360
HaeIII	GGCC	6 cut(s)	92, 198, 206, 349, 2589, 3141
HapII	CCGG	7 cut(s)	44, 58, 195, 281, 335, 350, 968
HgaI	GACGC	1 cut(s)	62
HhaI	GCGC	2 cut(s)	391, 2080
Hin1I	GRCGYC	1 cut(s)	54
Hin6I	GCGC	2 cut(s)	389, 2078
HinP1I	GCGC	2 cut(s)	389, 2078
HindIII	AAGCTT	2 cut(s)	1089, 2331
HpaII	CCGG	7 cut(s)	44, 58, 195, 281, 335, 350, 968
HphI	GGTGA	7 cut(s)	184, 253, 295, 1475, 2492, 3096, 3146
Hpy166II	GTNNAC	7 cut(s)	278, 1283, 1670, 1924, 2920, 3010, 3012
Hpy8I	GTNNAC	7 cut(s)	278, 1283, 1670, 1924, 2920, 3010, 3012
Hpy99I	CGWCG	3 cut(s)	56, 1832, 2835
HpyAV	CCTTC	6 cut(s)	1324, 1603, 1841, 2231, 2722, 3200
HpyCH4III	ACNGT	4 cut(s)	275, 526, 1860, 2272
HpyCH4IV	ACGT	4 cut(s)	153, 455, 1827, 2830
HpySE526I	ACGT	4 cut(s)	153, 455, 1827, 2830
Hsp92I	GRCGYC	1 cut(s)	54
HspAI	GCGC	2 cut(s)	389, 2078
Kpn2I	TCCGGA	1 cut(s)	967
Kzo9I	GATC	9 cut(s)	189, 417, 958, 970, 1189, 1486, 1660, 2629, 2986
LguI	GCTCTTC	1 cut(s)	492
LmnI	GCTCC	7 cut(s)	16, 268, 397, 970, 1211, 2532, 2686
MaeI	CTAG	4 cut(s)	587, 851, 1508, 2264
MaeII	ACGT	4 cut(s)	153, 455, 1827, 2830
MaeIII	GTNAC	2 cut(s)	1096, 1823
MalI	GATC	9 cut(s)	191, 419, 960, 972, 1191, 1488, 1662, 2631, 2988
MbiI	CCGCTC	1 cut(s)	116
MboI	GATC	9 cut(s)	189, 417, 958, 970, 1189, 1486, 1660, 2629, 2986
MfeI	CAATTG	2 cut(s)	444, 2685
MflI	RGATCY	2 cut(s)	1189, 1660
MhlI	GDGCHC	5 cut(s)	273, 920, 1516, 2683, 2922
MlsI	TGGCCA	1 cut(s)	92
MluNI	TGGCCA	1 cut(s)	92
MlyI	GAGTC	6 cut(s)	139, 761, 818, 1943, 2126, 3005
MmeI	TCCRAC	2 cut(s)	1675, 2761
Mox20I	TGGCCA	1 cut(s)	92
Mph1103I	ATGCAT	2 cut(s)	1318, 1553
MroI	TCCGGA	1 cut(s)	967
MroXI	GAANNNNTTC	5 cut(s)	633, 1158, 1473, 1634, 2163
MscI	TGGCCA	1 cut(s)	92
MslI	CAYNNNNRTG	4 cut(s)	263, 2160, 3005, 3219
Msp20I	TGGCCA	1 cut(s)	92
MspA1I	CMGCKG	2 cut(s)	2051, 2891
MspI	CCGG	7 cut(s)	44, 58, 195, 281, 335, 350, 968
MspR9I	CCNGG	4 cut(s)	58, 335, 568, 1883
MunI	CAATTG	2 cut(s)	444, 2685
Mva1269I	GAATGC	3 cut(s)	1072, 1306, 2770
MvaI	CCWGG	2 cut(s)	568, 1883
NciI	CCSGG	2 cut(s)	58, 335
NcoI	CCATGG	3 cut(s)	264, 2637, 3000
NdeI	CATATG	2 cut(s)	2098, 2695
NdeII	GATC	9 cut(s)	189, 417, 958, 970, 1189, 1486, 1660, 2629, 2986
NheI	GCTAGC	1 cut(s)	850
NlaIV	GGNNCC	6 cut(s)	111, 1155, 1734, 2104, 2553, 3066
NmeAIII	GCCGAG	2 cut(s)	2377, 3167
NsbI	TGCGCA	2 cut(s)	390, 2079
NsiI	ATGCAT	2 cut(s)	1318, 1553
NspI	RCATGY	5 cut(s)	1551, 1555, 2216, 3137, 3218
PagI	TCATGA	5 cut(s)	598, 1990, 2155, 2274, 2989
PciI	ACATGT	1 cut(s)	3133
PciSI	GCTCTTC	1 cut(s)	492
PctI	GAATGC	3 cut(s)	1072, 1306, 2770
PdmI	GAANNNNTTC	5 cut(s)	633, 1158, 1473, 1634, 2163
PfeI	GAWTC	9 cut(s)	728, 932, 1815, 2128, 2227, 2747, 2804, 2855, 3052
PflMI	CCANNNNNTGG	1 cut(s)	2849
PinAI	ACCGGT	1 cut(s)	280
PleI	GAGTC	6 cut(s)	139, 760, 817, 1942, 2125, 3004
PpsI	GAGTC	6 cut(s)	139, 760, 817, 1942, 2125, 3004
PpuMI	RGGWCCY	1 cut(s)	2552
PscI	ACATGT	1 cut(s)	3133
PshBI	ATTAAT	1 cut(s)	1953
Psp1406I	AACGTT	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	2552
Psp6I	CCWGG	2 cut(s)	566, 1881
PspFI	CCCAGC	1 cut(s)	638
PspGI	CCWGG	2 cut(s)	566, 1881
PspN4I	GGNNCC	6 cut(s)	111, 1155, 1734, 2104, 2553, 3066
PspPI	GGNCC	8 cut(s)	73, 109, 204, 2102, 2552, 2588, 2634, 3064
PspPPI	RGGWCCY	1 cut(s)	2552
PsrI	GAACNNNNNNTAC	2 cut(s)	1989, 2021
PstI	CTGCAG	3 cut(s)	985, 1585, 1921
PstNI	CAGNNNCTG	2 cut(s)	13, 2519
PsuI	RGATCY	2 cut(s)	1189, 1660
PvuII	CAGCTG	2 cut(s)	2051, 2891
RsaI	GTAC	7 cut(s)	1284, 1345, 2007, 2421, 2724, 2949, 3011
RsaNI	GTAC	7 cut(s)	1283, 1344, 2006, 2420, 2723, 2948, 3010
RseI	CAYNNNNRTG	4 cut(s)	263, 2160, 3005, 3219
SapI	GCTCTTC	1 cut(s)	492
Sau3AI	GATC	9 cut(s)	189, 417, 958, 970, 1189, 1486, 1660, 2629, 2986
Sau96I	GGNCC	8 cut(s)	73, 109, 204, 2102, 2552, 2588, 2634, 3064
ScaI	AGTACT	1 cut(s)	1345
SchI	GAGTC	6 cut(s)	139, 761, 818, 1943, 2126, 3005
ScrFI	CCNGG	4 cut(s)	58, 335, 568, 1883
SduI	GDGCHC	5 cut(s)	273, 920, 1516, 2683, 2922
SfcI	CTRYAG	3 cut(s)	981, 1581, 1917
SgrAI	CRCCGGYG	1 cut(s)	280
SinI	GGWCC	6 cut(s)	73, 109, 2102, 2552, 2634, 3064
SmiMI	CAYNNNNRTG	4 cut(s)	263, 2160, 3005, 3219
SmlI	CTYRAG	6 cut(s)	224, 793, 1307, 2058, 2328, 3090
SmoI	CTYRAG	6 cut(s)	224, 793, 1307, 2058, 2328, 3090
SsiI	CCGC	8 cut(s)	61, 68, 85, 114, 133, 138, 168, 181
SspI	AATATT	2 cut(s)	1951, 2281
SspMI	CTAG	4 cut(s)	587, 851, 1508, 2264
StyD4I	CCNGG	4 cut(s)	56, 333, 566, 1881
StyI	CCWWGG	5 cut(s)	264, 1227, 2637, 2718, 3000
TaaI	ACNGT	4 cut(s)	275, 526, 1860, 2272
TaiI	ACGT	4 cut(s)	156, 458, 1830, 2833
TaqI	TCGA	7 cut(s)	460, 625, 866, 973, 1041, 2406, 2700
TatI	WGTACW	3 cut(s)	1282, 1343, 3009
TauI	GCSGC	3 cut(s)	64, 88, 170
TfiI	GAWTC	9 cut(s)	728, 932, 1815, 2128, 2227, 2747, 2804, 2855, 3052
TscAI	CASTG	6 cut(s)	206, 301, 579, 1926, 2023, 3012
TspRI	CASTG	6 cut(s)	206, 301, 579, 1926, 2023, 3012
Van91I	CCANNNNNTGG	1 cut(s)	2849
VneI	GTGCAC	1 cut(s)	2918
VpaK11BI	GGWCC	6 cut(s)	73, 109, 2102, 2552, 2634, 3064
VspI	ATTAAT	1 cut(s)	1953
XapI	RAATTY	5 cut(s)	590, 629, 1043, 1836, 2600
XbaI	TCTAGA	1 cut(s)	586
XceI	RCATGY	5 cut(s)	1551, 1555, 2216, 3137, 3218
XmnI	GAANNNNTTC	5 cut(s)	633, 1158, 1473, 1634, 2163
XspI	CTAG	4 cut(s)	587, 851, 1508, 2264
ZrmI	AGTACT	1 cut(s)	1345
Zsp2I	ATGCAT	2 cut(s)	1318, 1553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.