MD09G1013400.v1.1

LysM domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
840799 .. 842019
1221 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1013400.v1.1.491

Sequence Viewer

Length: 1221 bp
ATGGACCAGATCGGGTTGTATGTCGTGCTTAGCGGAGTCACTGTTGGAGCCATCATTGCGATCGCGGCAGCATTCTTGCTACTTAAGATGAAGAAAAAGAAAACGACTTCACCAAAAGGATGTGATGTGGAGCTGCAACAGCTCAGCCTAAGTGTGAGGACAACAAGCGACAAGAAAGTCTCGTTTGAAGGATCTCAAGATACTTTTGTCAGTCAAATCGTCGAGACCACCACACCACGAAAGGCGCTGGTGGAGATGTATACAATTGAGGAGCTGACGAGAGCAACCGAGGACTTCAGTTCGAGCAACCATATCGAGGGATCTGTGTACCACGGCCGCCTAAGCGGGAAGAACTTGGCAGTAAAGCGCACGCAGCCGGACAGCATTCCGAAGATAGAGTTTGGCCTTTTTCATGACGCAATTCACCATCACCCCAACGTAATGAGGCTGTTGGGAACTTGCTTGAGGCCGGAGGGGGAAGAATCGTTTCTGGTTTTCGAGTACGCGAAGAATGGATCTTTGAAGGACTGGCTCCACGGCGGATTGGCAATCAAAAACCAGTTCATTGCGTCATGCTATTGTTTCTTAACGTGGAGCCAAAGGCTGAGGATATGTCTTGATGTGGCCATGGCATTGCAGTACATGCACCACATTATGAACCCCCCTTATGTCCATCGAAATGTCAAGAGCCGAAACATTTTCCTAGATGAAGAATTCAATGCGAAGATTGGGAATTTCGGCATGGCAAAGTGCGCTGAAAATGAAGCCGAGGATCAGAGCTTCGAGTACATGGCACCCGAATATCTTCAACAGGGTGTGATTTCTCCGAGCATTGACATATTTGCATACGGTGTGGTGTTGCTAGAGGTCTTGTGTGGACAAACGCCAATAAGCAGGCCGGGCGCTAAGGGAGAAGGAAACTTTTACCTGTCGGAGAAGATCAAATCCGTGTTGAAGTCAGACAATGCAGAGGAGCTAAGAGAGTGGATGGACAGCGCGTTGGGGGATAACTATTCGTTCGATGCAGCTGTCACATTGGCGAATCTTGCAAGGGCCTGCGTCGACGAAGACCCTAGTTTGAGGCCTAGTGCTGTGGAAGTTGTCGAGAAGTTGTCACGATTGCTGGAGGAGTCGAAAAGCGTGGAGGGAGAGAATATTTTTATCAGTGAGAGCTCTTGTAAGCCGCTGGTGAAGGCAGCAGCAGGGGCGAACAATAAGTGA

Protein Analysis

407

Amino Acids

45.02

Weight (kDa)

5.67

Isoelectric Point (pI)

49.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 108 - 369 2.2e-31 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 141 - 371 4.1e-31 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 176
AccB1I GGYRCC 1 cut(s) 793
AccI GTMKAC 2 cut(s) 260, 1062
AccII CGCG 3 cut(s) 65, 506, 998
AciI CCGC 6 cut(s) 33, 65, 337, 345, 540, 1184
AclWI GGATC 4 cut(s) 199, 328, 523, 780
AcoI YGGCCR 2 cut(s) 334, 624
AcsI RAATTY 2 cut(s) 713, 733
AcuI CTGAAG 1 cut(s) 280
AfaI GTAC 4 cut(s) 329, 503, 641, 788
AfiI CCNNNNNNNGG 1 cut(s) 316
AflII CTTAAG 1 cut(s) 83
AgsI TTSAA 5 cut(s) 188, 523, 718, 809, 955
AluBI AGCT 7 cut(s) 133, 142, 274, 780, 976, 1028, 1173
AluI AGCT 7 cut(s) 133, 142, 274, 780, 976, 1028, 1173
Alw21I GWGCWC 1 cut(s) 1175
Alw26I GTCTC 2 cut(s) 184, 218
AlwI GGATC 4 cut(s) 199, 328, 523, 780
AoxI GGCC 7 cut(s) 334, 403, 467, 624, 896, 1053, 1082
ApeKI GCWGC 6 cut(s) 68, 133, 373, 1025, 1196, 1199
ApoI RAATTY 2 cut(s) 713, 733
AsiSI GCGATCGC 1 cut(s) 63
Asp700I GAANNNNTTC 2 cut(s) 486, 804
AspLEI GCGC 5 cut(s) 247, 369, 755, 905, 998
AspS9I GGNCC 2 cut(s) 4, 1053
AsuC2I CCSGG 1 cut(s) 900
AsuHPI GGTGA 4 cut(s) 102, 416, 422, 1201
AvaII GGWCC 1 cut(s) 4
BaeI ACNNNNGTAYC 2 cut(s) 192, 225
BalI TGGCCA 1 cut(s) 626
BanI GGYRCC 1 cut(s) 793
BanII GRGCYC 1 cut(s) 1175
BbsI GAAGAC 1 cut(s) 1074
Bbv12I GWGCWC 1 cut(s) 1175
BbvCI CCTCAGC 1 cut(s) 605
BbvI GCAGC 6 cut(s) 80, 120, 385, 1037, 1208, 1211
BccI CCATC 4 cut(s) 59, 435, 681, 982
BceAI ACGGC 2 cut(s) 349, 553
BcgI CGANNNNNNTGC 2 cut(s) 295, 329
BcnI CCSGG 1 cut(s) 900
BcoDI GTCTC 2 cut(s) 184, 218
BfaI CTAG 4 cut(s) 704, 863, 1074, 1086
BfoI RGCGCY 2 cut(s) 248, 906
BfrI CTTAAG 1 cut(s) 83
BisI GCNGC 9 cut(s) 66, 69, 134, 337, 374, 1026, 1184, 1197, 1200
BlpI GCTNAGC 2 cut(s) 29, 143
BlsI GCNGC 9 cut(s) 67, 70, 135, 338, 375, 1027, 1185, 1198, 1201
Bme1390I CCNGG 1 cut(s) 900
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 2 cut(s) 4, 1053
BmiI GGNNCC 4 cut(s) 49, 533, 596, 795
BmrFI CCNGG 1 cut(s) 900
BmsI GCATC 1 cut(s) 1012
BpiI GAAGAC 1 cut(s) 1074
BpmI CTGGAG 1 cut(s) 1145
Bpu10I CCTNAGC 3 cut(s) 341, 605, 906
Bpu1102I GCTNAGC 2 cut(s) 29, 143
BpuEI CTTGAG 2 cut(s) 180, 484
BpuMI CCSGG 1 cut(s) 900
BsaI GGTCTC 1 cut(s) 218
BsaJI CCNNGG 5 cut(s) 288, 331, 535, 627, 768
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse1I ACTGG 2 cut(s) 533, 559
Bse3DI GCAATG 3 cut(s) 54, 564, 632
BseDI CCNNGG 5 cut(s) 288, 331, 535, 627, 768
BseGI GGATG 2 cut(s) 125, 993
BseLI CCNNNNNNNGG 1 cut(s) 316
BseMI GCAATG 3 cut(s) 54, 564, 632
BseMII CTCAG 2 cut(s) 157, 596
BseNI ACTGG 2 cut(s) 533, 559
BseRI GAGGAG 3 cut(s) 284, 986, 1142
BseX3I CGGCCG 1 cut(s) 334
BseXI GCAGC 6 cut(s) 80, 120, 385, 1037, 1208, 1211
Bsh1236I CGCG 3 cut(s) 65, 506, 998
Bsh1285I CGRYCG 2 cut(s) 63, 337
BshFI GGCC 7 cut(s) 336, 405, 469, 626, 898, 1055, 1084
BshNI GGYRCC 1 cut(s) 793
BsiEI CGRYCG 2 cut(s) 63, 337
BsiHKAI GWGCWC 1 cut(s) 1175
BsiSI CCGG 3 cut(s) 377, 470, 899
BslI CCNNNNNNNGG 1 cut(s) 316
BsmAI GTCTC 2 cut(s) 184, 218
BsmI GAATGC 2 cut(s) 71, 384
BsnI GGCC 7 cut(s) 336, 405, 469, 626, 898, 1055, 1084
Bso31I GGTCTC 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 1175
Bsp143I GATC 7 cut(s) 9, 60, 191, 320, 515, 772, 939
Bsp1720I GCTNAGC 2 cut(s) 29, 143
Bsp19I CCATGG 1 cut(s) 627
BspACI CCGC 6 cut(s) 33, 65, 337, 345, 540, 1184
BspANI GGCC 7 cut(s) 336, 405, 469, 626, 898, 1055, 1084
BspCNI CTCAG 2 cut(s) 156, 597
BspFNI CGCG 3 cut(s) 65, 506, 998
BspHI TCATGA 1 cut(s) 412
BspLI GGNNCC 4 cut(s) 49, 533, 596, 795
BspPI GGATC 4 cut(s) 199, 328, 523, 780
BspT107I GGYRCC 1 cut(s) 793
BspTI CTTAAG 1 cut(s) 83
BspTNI GGTCTC 1 cut(s) 218
BsrDI GCAATG 3 cut(s) 54, 564, 632
BsrI ACTGG 2 cut(s) 533, 559
BssECI CCNNGG 5 cut(s) 288, 331, 535, 627, 768
BssMI GATC 7 cut(s) 9, 60, 191, 320, 515, 772, 939
BssNAI GTATAC 1 cut(s) 261
BssT1I CCWWGG 1 cut(s) 627
Bst1107I GTATAC 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 43, 851
BstAFI CTTAAG 1 cut(s) 83
BstAPI GCANNNNNTGC 1 cut(s) 643
BstC8I GCNNGC 3 cut(s) 371, 896, 1057
BstDEI CTNAG 7 cut(s) 29, 143, 149, 341, 605, 906, 977
BstDSI CCRYGG 3 cut(s) 331, 535, 627
BstF5I GGATG 2 cut(s) 125, 993
BstFNI CGCG 3 cut(s) 65, 506, 998
BstH2I RGCGCY 2 cut(s) 248, 906
BstHHI GCGC 5 cut(s) 247, 369, 755, 905, 998
BstKTI GATC 7 cut(s) 12, 63, 194, 323, 518, 775, 942
BstMAI GTCTC 2 cut(s) 184, 218
BstMBI GATC 7 cut(s) 9, 60, 191, 320, 515, 772, 939
BstMCI CGRYCG 2 cut(s) 63, 337
BstNSI RCATGY 1 cut(s) 646
BstSCI CCNGG 1 cut(s) 898
BstUI CGCG 3 cut(s) 65, 506, 998
BstV1I GCAGC 6 cut(s) 80, 120, 385, 1037, 1208, 1211
BstV2I GAAGAC 1 cut(s) 1074
BstX2I RGATCY 3 cut(s) 191, 320, 515
BstYI RGATCY 3 cut(s) 191, 320, 515
BstZ17I GTATAC 1 cut(s) 261
BstZI CGGCCG 1 cut(s) 334
BsuRI GGCC 7 cut(s) 336, 405, 469, 626, 898, 1055, 1084
BtgI CCRYGG 3 cut(s) 331, 535, 627
BtsCI GGATG 2 cut(s) 125, 993
BtsIMutI CAGTG 2 cut(s) 39, 1171
Cac8I GCNNGC 3 cut(s) 371, 896, 1057
CciI TCATGA 1 cut(s) 412
CfoI GCGC 5 cut(s) 247, 369, 755, 905, 998
Cfr13I GGNCC 2 cut(s) 4, 1053
CseI GACGC 3 cut(s) 425, 558, 1048
Csp6I GTAC 4 cut(s) 328, 502, 640, 787
CviAII CATG 6 cut(s) 413, 573, 628, 643, 742, 790
CviQI GTAC 4 cut(s) 328, 502, 640, 787
DdeI CTNAG 7 cut(s) 29, 143, 149, 341, 605, 906, 977
DpnI GATC 7 cut(s) 11, 62, 193, 322, 517, 774, 941
DpnII GATC 7 cut(s) 9, 60, 191, 320, 515, 772, 939
DrdI GACNNNNNNGTC 1 cut(s) 176
DseDI GACNNNNNNGTC 1 cut(s) 176
EaeI YGGCCR 2 cut(s) 334, 624
EagI CGGCCG 1 cut(s) 334
EciI GGCGGA 1 cut(s) 555
Ecl136II GAGCTC 1 cut(s) 1173
EclXI CGGCCG 1 cut(s) 334
Eco130I CCWWGG 1 cut(s) 627
Eco147I AGGCCT 1 cut(s) 1084
Eco24I GRGCYC 1 cut(s) 1175
Eco31I GGTCTC 1 cut(s) 218
Eco47I GGWCC 1 cut(s) 4
Eco52I CGGCCG 1 cut(s) 334
Eco53kI GAGCTC 1 cut(s) 1173
Eco57I CTGAAG 1 cut(s) 280
EcoICRI GAGCTC 1 cut(s) 1173
EcoO109I RGGNCCY 1 cut(s) 1053
EcoRI GAATTC 1 cut(s) 713
EcoT14I CCWWGG 1 cut(s) 627
EcoT38I GRGCYC 1 cut(s) 1175
ErhI CCWWGG 1 cut(s) 627
FaeI CATG 6 cut(s) 416, 576, 631, 646, 745, 793
FatI CATG 6 cut(s) 412, 572, 627, 642, 741, 789
FauI CCCGC 1 cut(s) 338
FblI GTMKAC 2 cut(s) 260, 1062
Fnu4HI GCNGC 9 cut(s) 66, 69, 134, 337, 374, 1026, 1184, 1197, 1200
FokI GGATG 2 cut(s) 132, 1000
FriOI GRGCYC 1 cut(s) 1175
Fsp4HI GCNGC 9 cut(s) 66, 69, 134, 337, 374, 1026, 1184, 1197, 1200
FspBI CTAG 4 cut(s) 704, 863, 1074, 1086
GlaI GCGC 5 cut(s) 246, 368, 754, 904, 997
GluI GCNGC 9 cut(s) 66, 69, 134, 337, 374, 1026, 1184, 1197, 1200
GsuI CTGGAG 1 cut(s) 1145
HaeII RGCGCY 2 cut(s) 248, 906
HaeIII GGCC 7 cut(s) 336, 405, 469, 626, 898, 1055, 1084
HapII CCGG 3 cut(s) 377, 470, 899
HgaI GACGC 3 cut(s) 425, 558, 1048
HhaI GCGC 5 cut(s) 247, 369, 755, 905, 998
Hin1II CATG 6 cut(s) 416, 576, 631, 646, 745, 793
Hin6I GCGC 5 cut(s) 245, 367, 753, 903, 996
HinP1I GCGC 5 cut(s) 245, 367, 753, 903, 996
HincII GTYRAC 1 cut(s) 1063
HindII GTYRAC 1 cut(s) 1063
HinfI GANTC 4 cut(s) 36, 482, 1042, 1130
HpaII CCGG 3 cut(s) 377, 470, 899
HphI GGTGA 4 cut(s) 102, 416, 422, 1201
Hpy166II GTNNAC 4 cut(s) 261, 328, 878, 1063
Hpy188I TCNGA 5 cut(s) 390, 777, 828, 934, 961
Hpy188III TCNNGA 7 cut(s) 197, 223, 413, 617, 685, 1105, 1116
Hpy8I GTNNAC 4 cut(s) 261, 328, 878, 1063
Hpy99I CGWCG 3 cut(s) 224, 1064, 1067
HpyAV CCTTC 4 cut(s) 182, 517, 908, 1186
HpyCH4III ACNGT 2 cut(s) 43, 851
HpyCH4IV ACGT 2 cut(s) 438, 590
HpyCH4V TGCA 7 cut(s) 136, 637, 646, 845, 968, 1025, 1049
HpyF3I CTNAG 7 cut(s) 29, 143, 149, 341, 605, 906, 977
HpySE526I ACGT 2 cut(s) 438, 590
Hsp92II CATG 6 cut(s) 416, 576, 631, 646, 745, 793
HspAI GCGC 5 cut(s) 245, 367, 753, 903, 996
Kzo9I GATC 7 cut(s) 9, 60, 191, 320, 515, 772, 939
LmnI GCTCC 6 cut(s) 47, 130, 271, 537, 594, 973
Lsp1109I GCAGC 6 cut(s) 80, 120, 385, 1037, 1208, 1211
LweI GCATC 1 cut(s) 1012
MaeI CTAG 4 cut(s) 704, 863, 1074, 1086
MaeII ACGT 2 cut(s) 438, 590
MaeIII GTNAC 3 cut(s) 37, 1030, 1113
MalI GATC 7 cut(s) 11, 62, 193, 322, 517, 774, 941
MboI GATC 7 cut(s) 9, 60, 191, 320, 515, 772, 939
MfeI CAATTG 1 cut(s) 264
MflI RGATCY 3 cut(s) 191, 320, 515
MhlI GDGCHC 1 cut(s) 1175
MlsI TGGCCA 1 cut(s) 626
MluCI AATT 4 cut(s) 264, 420, 713, 733
MluNI TGGCCA 1 cut(s) 626
MlyI GAGTC 2 cut(s) 45, 1139
MmeI TCCRAC 2 cut(s) 25, 912
Mox20I TGGCCA 1 cut(s) 626
MroXI GAANNNNTTC 2 cut(s) 486, 804
MscI TGGCCA 1 cut(s) 626
MseI TTAA 2 cut(s) 84, 587
MslI CAYNNNNRTG 1 cut(s) 678
Msp20I TGGCCA 1 cut(s) 626
MspA1I CMGCKG 2 cut(s) 1028, 1186
MspCI CTTAAG 1 cut(s) 83
MspI CCGG 3 cut(s) 377, 470, 899
MspR9I CCNGG 1 cut(s) 900
MunI CAATTG 1 cut(s) 264
Mva1269I GAATGC 2 cut(s) 71, 384
MvnI CGCG 3 cut(s) 65, 506, 998
NciI CCSGG 1 cut(s) 900
NcoI CCATGG 1 cut(s) 627
NdeII GATC 7 cut(s) 9, 60, 191, 320, 515, 772, 939
NlaIII CATG 6 cut(s) 416, 576, 631, 646, 745, 793
NlaIV GGNNCC 4 cut(s) 49, 533, 596, 795
NmeAIII GCCGAG 1 cut(s) 793
NmuCI GTSAC 3 cut(s) 37, 1030, 1113
NspI RCATGY 1 cut(s) 646
PagI TCATGA 1 cut(s) 412
PceI AGGCCT 1 cut(s) 1084
PctI GAATGC 2 cut(s) 71, 384
PdmI GAANNNNTTC 2 cut(s) 486, 804
PfeI GAWTC 2 cut(s) 482, 1042
PkrI GCNGC 9 cut(s) 67, 70, 135, 338, 375, 1027, 1185, 1198, 1201
Ple19I CGATCG 1 cut(s) 63
PleI GAGTC 2 cut(s) 44, 1138
PpsI GAGTC 2 cut(s) 44, 1138
Psp124BI GAGCTC 1 cut(s) 1175
PspN4I GGNNCC 4 cut(s) 49, 533, 596, 795
PspPI GGNCC 2 cut(s) 4, 1053
PsuI RGATCY 3 cut(s) 191, 320, 515
PvuI CGATCG 1 cut(s) 63
PvuII CAGCTG 1 cut(s) 1028
RgaI GCGATCGC 1 cut(s) 63
RsaI GTAC 4 cut(s) 329, 503, 641, 788
RsaNI GTAC 4 cut(s) 328, 502, 640, 787
RseI CAYNNNNRTG 1 cut(s) 678
SacI GAGCTC 1 cut(s) 1175
SalI GTCGAC 1 cut(s) 1061
SaqAI TTAA 2 cut(s) 84, 587
SatI GCNGC 9 cut(s) 66, 69, 134, 337, 374, 1026, 1184, 1197, 1200
Sau3AI GATC 7 cut(s) 9, 60, 191, 320, 515, 772, 939
Sau96I GGNCC 2 cut(s) 4, 1053
SchI GAGTC 2 cut(s) 45, 1139
ScrFI CCNGG 1 cut(s) 900
SduI GDGCHC 1 cut(s) 1175
SfaAI GCGATCGC 1 cut(s) 63
SfaNI GCATC 1 cut(s) 1012
SgfI GCGATCGC 1 cut(s) 63
SgrDI CGTCGACG 1 cut(s) 1061
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 678
SmlI CTYRAG 3 cut(s) 83, 195, 463
SmoI CTYRAG 3 cut(s) 83, 195, 463
Sse9I AATT 4 cut(s) 264, 420, 713, 733
SseBI AGGCCT 1 cut(s) 1084
SsiI CCGC 6 cut(s) 33, 65, 337, 345, 540, 1184
SspI AATATT 1 cut(s) 1156
SspMI CTAG 4 cut(s) 704, 863, 1074, 1086
SstI GAGCTC 1 cut(s) 1175
StuI AGGCCT 1 cut(s) 1084
StyD4I CCNGG 1 cut(s) 898
StyI CCWWGG 1 cut(s) 627
TaaI ACNGT 2 cut(s) 43, 851
TaiI ACGT 2 cut(s) 441, 593
TasI AATT 4 cut(s) 264, 420, 713, 733
TatI WGTACW 2 cut(s) 639, 786
TauI GCSGC 3 cut(s) 68, 339, 1186
TfiI GAWTC 2 cut(s) 482, 1042
Tru1I TTAA 2 cut(s) 84, 587
Tru9I TTAA 2 cut(s) 84, 587
TscAI CASTG 2 cut(s) 46, 1171
TseFI GTSAC 3 cut(s) 37, 1030, 1113
TseI GCWGC 6 cut(s) 68, 133, 373, 1025, 1196, 1199
Tsp45I GTSAC 3 cut(s) 37, 1030, 1113
TspDTI ATGAA 6 cut(s) 104, 401, 553, 671, 723, 777
TspGWI ACGGA 1 cut(s) 937
TspRI CASTG 2 cut(s) 46, 1171
Vha464I CTTAAG 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 2 cut(s) 713, 733
XceI RCATGY 1 cut(s) 646
XmiI GTMKAC 2 cut(s) 260, 1062
XmnI GAANNNNTTC 2 cut(s) 486, 804
XspI CTAG 4 cut(s) 704, 863, 1074, 1086
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.