Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009956

Physical Location & Seq

Genomic Coordinates Reverse (-)

82483552 .. 82485594

Gene Structure 2043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022311

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2043 bp

ATGGCTGCTGCTTTGTTCACTAGTGAGCAGCTCTACTTGACATTATTCTTCTTCATCGTCTCGCTTCTTGTGTCTGCACTTGGACTACAGAACCAACTGCTAAGCTGCGAGTCCGAATCTCCAGATGCTTCTTCTGCCTACCACTGCAGTACTAGTAATAGTGGATCAAATGGATCATCATCACCACTCAACCACTGTGCCACATTTGCAATTCTTCGAACCAACTCATACTACTCCTCTCTCTTGAACCTGAGTTCTTACTTGGGGATCAACCGGTTTGTGATTGCAGAAGCAAATGGCTTTTCAGCAGACACAGAGTTTCTTCCGAAAGAACAGCCTTTGTTGATACCAATTGATTGCAAATGCAGCAATGGGAGGTTGTTTCAAGCGCAGTTGACAAAAACCACCATCAGAGGTGAGAGCTTTTATGGCATTGCTGAAGCACTAGAGGGCTTGACAACTTGCAAAGCTATCCGAGAGAAGAACCCTGGTGTCTCGCCCTGGGAACTTGCTGATAAAGTTGAGTTACACATTCCCTTGAGATGTGCTTGTCCCTCTAACTCATCTCAGTCAACACTCTTGCTTTCTTATCCAGTGAATGAAGGTGATACCATTTCTTCTTTGGCCATTCAATTCAATACTACTCAAGAAGCTATCATATCTGCAAATAACAGATCAACCTTTAGACCTGAAAACAGCTTAGTGCCACTTACATCTCTTCTGATTCCACTCAATGCAAAACCGATACTTGGTCCTCTAGAAAAGCCCCGCAAACCAAACTTGCGTTTTCCAGCAACTAGCGTTCCAGCTATTAGTCCACACAAGAAGAAAGCAAAAATGCGCAGGGTTGGACTATATGTCACTATCATTGTGGTAGTTGTTGCAGCTAGCATTGCAATTGCAGCGGCTTTGTTGGTAATTCAGTTGAGGAAGAAGAAACAGATCAGTTCATCCAAAGGAGTTGTTGATTTGGAACTACAGCAGCTCAGTCTAAGCGTAAGAACCACAAGTGACAAGAAGGTCTCATTTGAGGGATCTCAAGATACTTTAGATGGTCACATTGTTGAAGCCACCACGCCACGCAAAGTGCTGGTGGAGACATATACCATGGAGGAGCTGATAAAAGCAACCGAGGACTTCAGTTCAAGCAACCACATTGAAGGGTCTGTATACCATGGCCGTCTCAGTGGCAACAACTTGGCAATAAAGCGCACGCGACATGACACCATCTCAAGAATCGAGTTTGGGCTTTTCCATGATGCAATTCACCACCATCCAAACATAATGAGGCTGTTGGGGACATGTTTGACAGAGGCTCAAGATTCATTTCTGGTTTTCGAGTATGTAAAGAATGGATCGTTGAAGGATTGGCTTCATGGTGGATTGGCAATTAAAAACCAGTTCATTGCCTCGTGTGATTGTTTCTTGACATGGAGCCAAAGGCTGAGGATATGTCTTGATGTGGCCCTGGCATTACAGTACATGCACCACATAATGAACCCAAGTTATGTGCATCGAAATGTGAAGAGCAGAAACATCTTCTTGGATGAAGAATTCAATGCCAAGATTGGATACTTTGGAATGGCAAAGTGTGTTGAAAATGATACTGAAAATTTGGCTCCTGAATATGTTCACCAGGGTGTGGTTTCTCCAAGCACTGATATATTTGCTTATGGAGTAGTGTTGTTGGAGGTCTTGTGTGGGCAAAAGGCATTAACCAAGCCTAGTGAGATGGGGCAGGGCAAACATTTTTGGCTGTCAGAGAAAATCAAATCCATATTGCAGTCAGACAATGTAGATGGGCTGAGGGAATGGATGGACAGCGCATTGGGTGAGAATTATTCTTTTGATGCAGCTCTCACATTAGCGAATCTTGCGAGTGCTTGTGGAAATGAAGACCCTTGTTTGAGACCAAGTGCAGGAGAAGTTGTTGAGAAACTTTCGAGAATGGTGGAAGAGTACGCAGTAGAAGGAGAGAATATGTTGATGAGTGAGAGCTGTTCCAAACCTCTGGTCAAGGCAGCTGCTGCAACCATTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

681

Amino Acids

74.73

Weight (kDa)

6.33

Isoelectric Point (pI)

45.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LysM1_NFP_LYK	PF23446	66 - 122	2.3e-10	NFP/LYK LysM1 domain
LysM2_CERK1_LYK3_4_5	PF23472	128 - 181	9.6e-13	LYK3/4/5 LysM2 domain
LysM3_LYK4_5	PF23473	194 - 244	9.2e-10	LYK4/5 LysM3 domain
Pkinase	PF00069	389 - 645	2.2e-24	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	390 - 580	1.5e-25	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01840
fragaria_vesca	FvH4_6g53170 FvH4_6g53170 FvH4_6g53170
malus_domestica	MD09G1013400.v1.1 MD17G1014100.v1.1
prunus_persica	Prupe.3G303700_v2.0.a1
pyrus_communis	pycom111g01140
rosa_chinensis	RchiOBHm_Chr2g0175211
rosa_laevigata	RLG00000022311
rosa_multiflora	Rmu_sc0003920.1_g000020 Rmu_sc0010642.1_g000015 Rmu_sc0043138.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077490
rosa_rugosa	Rorug02G0581400 Rorug02G0581500
rosa_samantha	Rh2AG662100 Rh2BG673300 Rh2CG636500 Rh2DG687200
rosa_wichuraiana	Rw2G054300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1019
Acc16I	TGCGCA	1 cut(s)	842
AccB7I	CCANNNNNTGG	1 cut(s)	1642
AccI	GTMKAC	1 cut(s)	1170
AccII	CGCG	1 cut(s)	1216
AciI	CCGC	2 cut(s)	769, 905
AclWI	GGATC	5 cut(s)	172, 181, 275, 1042, 1363
AcoI	YGGCCR	2 cut(s)	624, 1177
AcsI	RAATTY	2 cut(s)	1553, 1612
AcuI	CTGAAG	2 cut(s)	459, 1123
AfaI	GTAC	3 cut(s)	151, 1481, 1961
AfiI	CCNNNNNNNGG	3 cut(s)	749, 1642, 1919
AflIII	ACRYGT	1 cut(s)	1301
AgeI	ACCGGT	1 cut(s)	273
AhdI	GACNNNNNGTC	1 cut(s)	857
AhlI	ACTAGT	2 cut(s)	20, 152
AjnI	CCWGG	4 cut(s)	487, 500, 1467, 1635
AleI	CACNNNNGTG	1 cut(s)	1638
Alw26I	GTCTC	6 cut(s)	64, 499, 1027, 1091, 1187, 1903
AlwI	GGATC	5 cut(s)	172, 181, 275, 1042, 1363
AlwNI	CAGNNNCTG	1 cut(s)	2027
AoxI	GGCC	3 cut(s)	624, 1177, 1464
ApoI	RAATTY	2 cut(s)	1553, 1612
ArsI	GACNNNNNNTTYG	2 cut(s)	1998, 2030
AsiGI	ACCGGT	1 cut(s)	273
Asp700I	GAANNNNTTC	1 cut(s)	1629
AspLEI	GCGC	4 cut(s)	391, 843, 1212, 1826
AspS9I	GGNCC	2 cut(s)	752, 1465
AsuHPI	GGTGA	6 cut(s)	174, 428, 617, 1259, 1625, 1844
AsuII	TTCGAA	1 cut(s)	217
AsuNHI	GCTAGC	1 cut(s)	887
AvaII	GGWCC	1 cut(s)	752
BalI	TGGCCA	1 cut(s)	626
BauI	CACGAG	1 cut(s)	1411
BbsI	GAAGAC	1 cut(s)	1902
BbvCI	CCTCAGC	2 cut(s)	1445, 1805
BccI	CCATC	7 cut(s)	416, 1046, 1235, 1281, 1726, 1793, 1810
BceAI	ACGGC	1 cut(s)	1164
BciT130I	CCWGG	4 cut(s)	489, 502, 1469, 1637
BciVI	GTATCC	1 cut(s)	1565
BcoDI	GTCTC	6 cut(s)	64, 499, 1027, 1091, 1187, 1903
BcuI	ACTAGT	2 cut(s)	20, 152
BfaI	CTAG	7 cut(s)	21, 153, 446, 758, 798, 888, 1725
BfmI	CTRYAG	3 cut(s)	86, 145, 977
BfuI	GTATCC	1 cut(s)	1565
BlpI	GCTNAGC	1 cut(s)	101
BmcAI	AGTACT	1 cut(s)	151
Bme1390I	CCNGG	4 cut(s)	489, 502, 1469, 1637
Bme18I	GGWCC	1 cut(s)	752
BmeRI	GACNNNNNGTC	1 cut(s)	857
BmgT120I	GGNCC	2 cut(s)	752, 1465
BmiI	GGNNCC	2 cut(s)	1436, 1620
BmrFI	CCNGG	4 cut(s)	489, 502, 1469, 1637
BmsI	GCATC	4 cut(s)	115, 1249, 1522, 1840
BmtI	GCTAGC	1 cut(s)	891
BpiI	GAAGAC	1 cut(s)	1902
BpmI	CTGGAG	1 cut(s)	105
Bpu10I	CCTNAGC	2 cut(s)	1445, 1805
Bpu1102I	GCTNAGC	1 cut(s)	101
Bpu14I	TTCGAA	1 cut(s)	217
BpuEI	CTTGAG	5 cut(s)	559, 630, 1023, 1216, 1302
BsaBI	GATNNNNATC	1 cut(s)	178
BsaI	GGTCTC	2 cut(s)	1027, 1903
BsaJI	CCNNGG	8 cut(s)	487, 500, 501, 1107, 1131, 1174, 1467, 1636
BsaWI	WCCGGW	1 cut(s)	273
BsaXI	ACNNNNNCTCC	4 cut(s)	1682, 1712, 1914, 1944
Bsc4I	CCNNNNNNNGG	3 cut(s)	749, 1642, 1919
Bse118I	RCCGGY	1 cut(s)	273
Bse1I	ACTGG	2 cut(s)	593, 1399
Bse3DI	GCAATG	4 cut(s)	376, 432, 891, 1404
Bse8I	GATNNNNATC	1 cut(s)	178
BseBI	CCWGG	4 cut(s)	489, 502, 1469, 1637
BseDI	CCNNGG	8 cut(s)	487, 500, 501, 1107, 1131, 1174, 1467, 1636
BseGI	GGATG	4 cut(s)	950, 1273, 1552, 1821
BseJI	GATNNNNATC	1 cut(s)	178
BseLI	CCNNNNNNNGG	3 cut(s)	749, 1642, 1919
BseMI	GCAATG	4 cut(s)	376, 432, 891, 1404
BseMII	CTCAG	6 cut(s)	242, 581, 1000, 1198, 1436, 1796
BseNI	ACTGG	2 cut(s)	593, 1399
BseRI	GAGGAG	2 cut(s)	226, 1127
BsgI	GTGCAG	2 cut(s)	60, 1938
Bsh1236I	CGCG	1 cut(s)	1216
BshFI	GGCC	3 cut(s)	626, 1179, 1466
BshTI	ACCGGT	1 cut(s)	273
BsiSI	CCGG	1 cut(s)	274
BslFI	GGGAC	2 cut(s)	537, 1312
BslI	CCNNNNNNNGG	3 cut(s)	749, 1642, 1919
BsmAI	GTCTC	6 cut(s)	64, 499, 1027, 1091, 1187, 1903
BsmBI	CGTCTC	2 cut(s)	64, 1187
BsmFI	GGGAC	2 cut(s)	537, 1312
BsnI	GGCC	3 cut(s)	626, 1179, 1466
Bso31I	GGTCTC	2 cut(s)	1027, 1903
Bsp119I	TTCGAA	1 cut(s)	217
Bsp143I	GATC	7 cut(s)	164, 173, 267, 674, 942, 1034, 1355
Bsp1720I	GCTNAGC	1 cut(s)	101
Bsp19I	CCATGG	2 cut(s)	1107, 1174
BspACI	CCGC	2 cut(s)	769, 905
BspANI	GGCC	3 cut(s)	626, 1179, 1466
BspCNI	CTCAG	6 cut(s)	243, 580, 999, 1197, 1437, 1797
BspFNI	CGCG	1 cut(s)	1216
BspLI	GGNNCC	2 cut(s)	1436, 1620
BspMAI	CTGCAG	1 cut(s)	149
BspOI	GCTAGC	1 cut(s)	891
BspPI	GGATC	5 cut(s)	172, 181, 275, 1042, 1363
BspQI	GCTCTTC	1 cut(s)	1520
BspT104I	TTCGAA	1 cut(s)	217
BspTNI	GGTCTC	2 cut(s)	1027, 1903
BsrDI	GCAATG	4 cut(s)	376, 432, 891, 1404
BsrFI	RCCGGY	1 cut(s)	273
BsrI	ACTGG	2 cut(s)	593, 1399
BssAI	RCCGGY	1 cut(s)	273
BssECI	CCNNGG	8 cut(s)	487, 500, 501, 1107, 1131, 1174, 1467, 1636
BssMI	GATC	7 cut(s)	164, 173, 267, 674, 942, 1034, 1355
BssNAI	GTATAC	1 cut(s)	1171
BssSI	CACGAG	1 cut(s)	1411
BssT1I	CCWWGG	2 cut(s)	1107, 1174
Bst1107I	GTATAC	1 cut(s)	1171
Bst2BI	CACGAG	1 cut(s)	1411
Bst2UI	CCWGG	4 cut(s)	489, 502, 1469, 1637
Bst4CI	ACNGT	2 cut(s)	197, 1479
Bst6I	CTCTTC	3 cut(s)	723, 1520, 1950
BstAPI	GCANNNNNTGC	1 cut(s)	2027
BstBI	TTCGAA	1 cut(s)	217
BstC8I	GCNNGC	2 cut(s)	889, 1214
BstDEI	CTNAG	9 cut(s)	101, 251, 567, 700, 986, 992, 1184, 1445, 1805
BstDSI	CCRYGG	2 cut(s)	1107, 1174
BstF5I	GGATG	4 cut(s)	950, 1273, 1552, 1821
BstFNI	CGCG	1 cut(s)	1216
BstHHI	GCGC	4 cut(s)	391, 843, 1212, 1826
BstKTI	GATC	7 cut(s)	167, 176, 270, 677, 945, 1037, 1358
BstMAI	GTCTC	6 cut(s)	64, 499, 1027, 1091, 1187, 1903
BstMBI	GATC	7 cut(s)	164, 173, 267, 674, 942, 1034, 1355
BstMWI	GCNNNNNNNGC	8 cut(s)	134, 206, 366, 429, 893, 902, 1874, 2027
BstNI	CCWGG	4 cut(s)	489, 502, 1469, 1637
BstNSI	RCATGY	2 cut(s)	1305, 1486
BstSCI	CCNGG	4 cut(s)	487, 500, 1467, 1635
BstSFI	CTRYAG	3 cut(s)	86, 145, 977
BstUI	CGCG	1 cut(s)	1216
BstV2I	GAAGAC	1 cut(s)	1902
BstX2I	RGATCY	1 cut(s)	1034
BstXI	CCANNNNNNTGG	1 cut(s)	2011
BstYI	RGATCY	1 cut(s)	1034
BstZ17I	GTATAC	1 cut(s)	1171
BsuI	GTATCC	1 cut(s)	1565
BsuRI	GGCC	3 cut(s)	626, 1179, 1466
BtgI	CCRYGG	2 cut(s)	1107, 1174
BtsCI	GGATG	4 cut(s)	950, 1273, 1552, 1821
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	5 cut(s)	142, 193, 600, 1192, 1656
Cac8I	GCNNGC	2 cut(s)	889, 1214
CaiI	CAGNNNCTG	1 cut(s)	2027
CfoI	GCGC	4 cut(s)	391, 843, 1212, 1826
Cfr10I	RCCGGY	1 cut(s)	273
Cfr13I	GGNCC	2 cut(s)	752, 1465
Csp6I	GTAC	3 cut(s)	150, 1480, 1960
CspAI	ACCGGT	1 cut(s)	273
CviAII	CATG	8 cut(s)	1108, 1175, 1220, 1256, 1302, 1376, 1431, 1483
CviQI	GTAC	3 cut(s)	150, 1480, 1960
DdeI	CTNAG	9 cut(s)	101, 251, 567, 700, 986, 992, 1184, 1445, 1805
DpnI	GATC	7 cut(s)	166, 175, 269, 676, 944, 1036, 1357
DpnII	GATC	7 cut(s)	164, 173, 267, 674, 942, 1034, 1355
DrdI	GACNNNNNNGTC	1 cut(s)	1019
DriI	GACNNNNNGTC	1 cut(s)	857
DseDI	GACNNNNNNGTC	1 cut(s)	1019
EaeI	YGGCCR	2 cut(s)	624, 1177
Eam1104I	CTCTTC	3 cut(s)	723, 1520, 1950
Eam1105I	GACNNNNNGTC	1 cut(s)	857
EarI	CTCTTC	3 cut(s)	723, 1520, 1950
Eco130I	CCWWGG	2 cut(s)	1107, 1174
Eco31I	GGTCTC	2 cut(s)	1027, 1903
Eco47I	GGWCC	1 cut(s)	752
Eco57I	CTGAAG	2 cut(s)	459, 1123
EcoRI	GAATTC	1 cut(s)	1553
EcoRII	CCWGG	4 cut(s)	487, 500, 1467, 1635
EcoT14I	CCWWGG	2 cut(s)	1107, 1174
ErhI	CCWWGG	2 cut(s)	1107, 1174
Esp3I	CGTCTC	2 cut(s)	64, 1187
FaeI	CATG	8 cut(s)	1111, 1178, 1223, 1259, 1305, 1379, 1434, 1486
FaqI	GGGAC	2 cut(s)	537, 1312
FatI	CATG	8 cut(s)	1107, 1174, 1219, 1255, 1301, 1375, 1430, 1482
FauI	CCCGC	1 cut(s)	776
FblI	GTMKAC	1 cut(s)	1170
FokI	GGATG	4 cut(s)	937, 1260, 1559, 1828
FspBI	CTAG	7 cut(s)	21, 153, 446, 758, 798, 888, 1725
FspI	TGCGCA	1 cut(s)	842
GlaI	GCGC	4 cut(s)	390, 842, 1211, 1825
GsuI	CTGGAG	1 cut(s)	105
HaeIII	GGCC	3 cut(s)	626, 1179, 1466
HapII	CCGG	1 cut(s)	274
HhaI	GCGC	4 cut(s)	391, 843, 1212, 1826
Hin1II	CATG	8 cut(s)	1111, 1178, 1223, 1259, 1305, 1379, 1434, 1486
Hin6I	GCGC	4 cut(s)	389, 841, 1210, 1824
HinP1I	GCGC	4 cut(s)	389, 841, 1210, 1824
HincII	GTYRAC	2 cut(s)	396, 573
HindII	GTYRAC	2 cut(s)	396, 573
HinfI	GANTC	6 cut(s)	110, 116, 724, 1236, 1322, 1870
HpaII	CCGG	1 cut(s)	274
HphI	GGTGA	6 cut(s)	174, 428, 617, 1259, 1625, 1844
Hpy166II	GTNNAC	6 cut(s)	18, 396, 573, 818, 1171, 1633
Hpy188I	TCNGA	7 cut(s)	115, 327, 413, 476, 723, 1762, 1789
Hpy8I	GTNNAC	6 cut(s)	18, 396, 573, 818, 1171, 1633
HpyAV	CCTTC	5 cut(s)	596, 1012, 1154, 1357, 1964
HpyCH4III	ACNGT	2 cut(s)	197, 1479
HpyF10VI	GCNNNNNNNGC	8 cut(s)	134, 206, 366, 429, 893, 902, 1874, 2027
HpyF3I	CTNAG	9 cut(s)	101, 251, 567, 700, 986, 992, 1184, 1445, 1805
Hsp92II	CATG	8 cut(s)	1111, 1178, 1223, 1259, 1305, 1379, 1434, 1486
HspAI	GCGC	4 cut(s)	389, 841, 1210, 1824
Kzo9I	GATC	7 cut(s)	164, 173, 267, 674, 942, 1034, 1355
LguI	GCTCTTC	1 cut(s)	1520
LmnI	GCTCC	3 cut(s)	1114, 1434, 1624
LweI	GCATC	4 cut(s)	115, 1249, 1522, 1840
MaeI	CTAG	7 cut(s)	21, 153, 446, 758, 798, 888, 1725
MaeIII	GTNAC	4 cut(s)	525, 859, 1010, 1055
MalI	GATC	7 cut(s)	166, 175, 269, 676, 944, 1036, 1357
MboI	GATC	7 cut(s)	164, 173, 267, 674, 942, 1034, 1355
MfeI	CAATTG	2 cut(s)	351, 897
MflI	RGATCY	1 cut(s)	1034
MlsI	TGGCCA	1 cut(s)	626
MluNI	TGGCCA	1 cut(s)	626
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	2 cut(s)	829, 1668
Mox20I	TGGCCA	1 cut(s)	626
MroXI	GAANNNNTTC	1 cut(s)	1629
MscI	TGGCCA	1 cut(s)	626
MseI	TTAA	2 cut(s)	1392, 1715
MslI	CAYNNNNRTG	2 cut(s)	1518, 1638
Msp20I	TGGCCA	1 cut(s)	626
MspA1I	CMGCKG	2 cut(s)	905, 2024
MspI	CCGG	1 cut(s)	274
MspR9I	CCNGG	4 cut(s)	489, 502, 1469, 1637
MunI	CAATTG	2 cut(s)	351, 897
MvaI	CCWGG	4 cut(s)	489, 502, 1469, 1637
MvnI	CGCG	1 cut(s)	1216
MwoI	GCNNNNNNNGC	8 cut(s)	134, 206, 366, 429, 893, 902, 1874, 2027
NcoI	CCATGG	2 cut(s)	1107, 1174
NdeII	GATC	7 cut(s)	164, 173, 267, 674, 942, 1034, 1355
NheI	GCTAGC	1 cut(s)	887
NlaIII	CATG	8 cut(s)	1111, 1178, 1223, 1259, 1305, 1379, 1434, 1486
NlaIV	GGNNCC	2 cut(s)	1436, 1620
NmuCI	GTSAC	3 cut(s)	859, 1010, 1055
NsbI	TGCGCA	1 cut(s)	842
NspI	RCATGY	2 cut(s)	1305, 1486
NspV	TTCGAA	1 cut(s)	217
OliI	CACNNNNGTG	1 cut(s)	1638
PasI	CCCWGGG	1 cut(s)	501
PciI	ACATGT	1 cut(s)	1301
PciSI	GCTCTTC	1 cut(s)	1520
PdmI	GAANNNNTTC	1 cut(s)	1629
PfeI	GAWTC	5 cut(s)	116, 724, 1236, 1322, 1870
PflMI	CCANNNNNTGG	1 cut(s)	1642
PinAI	ACCGGT	1 cut(s)	273
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PscI	ACATGT	1 cut(s)	1301
Psp6I	CCWGG	4 cut(s)	487, 500, 1467, 1635
PspGI	CCWGG	4 cut(s)	487, 500, 1467, 1635
PspN4I	GGNNCC	2 cut(s)	1436, 1620
PspPI	GGNCC	2 cut(s)	752, 1465
PstI	CTGCAG	1 cut(s)	149
PstNI	CAGNNNCTG	1 cut(s)	2027
PsuI	RGATCY	1 cut(s)	1034
PvuII	CAGCTG	1 cut(s)	2024
RsaI	GTAC	3 cut(s)	151, 1481, 1961
RsaNI	GTAC	3 cut(s)	150, 1480, 1960
RseI	CAYNNNNRTG	2 cut(s)	1518, 1638
SapI	GCTCTTC	1 cut(s)	1520
SaqAI	TTAA	2 cut(s)	1392, 1715
Sau3AI	GATC	7 cut(s)	164, 173, 267, 674, 942, 1034, 1355
Sau96I	GGNCC	2 cut(s)	752, 1465
ScaI	AGTACT	1 cut(s)	151
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	4 cut(s)	489, 502, 1469, 1637
SfaNI	GCATC	4 cut(s)	115, 1249, 1522, 1840
SfcI	CTRYAG	3 cut(s)	86, 145, 977
SfuI	TTCGAA	1 cut(s)	217
SinI	GGWCC	1 cut(s)	752
SmiMI	CAYNNNNRTG	2 cut(s)	1518, 1638
SmlI	CTYRAG	5 cut(s)	538, 645, 1038, 1231, 1317
SmoI	CTYRAG	5 cut(s)	538, 645, 1038, 1231, 1317
SpeI	ACTAGT	2 cut(s)	20, 152
SsiI	CCGC	2 cut(s)	769, 905
SspMI	CTAG	7 cut(s)	21, 153, 446, 758, 798, 888, 1725
StyD4I	CCNGG	4 cut(s)	487, 500, 1467, 1635
StyI	CCWWGG	2 cut(s)	1107, 1174
TaaI	ACNGT	2 cut(s)	197, 1479
TaqI	TCGA	5 cut(s)	217, 1239, 1338, 1516, 1943
TatI	WGTACW	2 cut(s)	149, 1479
TauI	GCSGC	1 cut(s)	908
TfiI	GAWTC	5 cut(s)	116, 724, 1236, 1322, 1870
Tru1I	TTAA	2 cut(s)	1392, 1715
Tru9I	TTAA	2 cut(s)	1392, 1715
TscAI	CASTG	5 cut(s)	149, 200, 600, 1192, 1663
TseFI	GTSAC	3 cut(s)	859, 1010, 1055
Tsp45I	GTSAC	3 cut(s)	859, 1010, 1055
TspDTI	ATGAA	9 cut(s)	43, 615, 939, 1314, 1364, 1393, 1511, 1563, 1908
TspRI	CASTG	5 cut(s)	149, 200, 600, 1192, 1663
Van91I	CCANNNNNTGG	1 cut(s)	1642
VpaK11BI	GGWCC	1 cut(s)	752
XapI	RAATTY	2 cut(s)	1553, 1612
XbaI	TCTAGA	1 cut(s)	757
XceI	RCATGY	2 cut(s)	1305, 1486
XcmI	CCANNNNNNNNNTGG	1 cut(s)	619
XmiI	GTMKAC	1 cut(s)	1170
XmnI	GAANNNNTTC	1 cut(s)	1629
XspI	CTAG	7 cut(s)	21, 153, 446, 758, 798, 888, 1725
ZrmI	AGTACT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.