Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009956

Physical Location & Seq

Genomic Coordinates Reverse (-)

70522160 .. 70523165

Gene Structure 1006 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0581500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGTGGTTACTTTGACAAGATGCCGGATGGTACCAAAAAATATAGGGTGGCTAGCTAGGTTTAACAAAGATGGTGGGAAGATATGGCTAGATGGTTTAGACCCAGATAAGATAGCATGGACAGAGTTTGGGAACATAGCTTGGGATCTTGGGTATAGAGAGAAACCGATTTCATACTACTTCAAGATTCCTCGAACTTCTTGCAATGAGGGATGGATGCCGATTAAGAATGATGCAGATGCAATTGAGATGACCAAGCTCATTCCTCTAAAGACAAGGCAAATCAGTGTGTATATTACTGGTGGTGGGAGGAGGAGAAAAAAGGAGGCTGAAGAGGATGACTTAAGGCCATCTGATTGGGAAAACCCATTGAATAGGTTGACAGCAGTAGAGAGAGAAAGGCTAGAACAAAGTAGCAACATCTTTGCAAGTCAGCTAAATAGGCCAAGTGGAGTAGGTGGAGTAAATGTTGGAGGTGGAGTGGGTGCAGACCAGCAAAGTCAAGGCACCTTTACTGGTCTTAGTGACCTGGTGCCTGACCTGTTTGCTTCACAAGGTGAGGGAATCCAAAGTGAGCTGAGGCAGGGGAAGAATAGTAATAGGGGCTATGTGGATGGTTGTCCAGGGGTATTTAGTGGCTTTTACAATAGGTTTATTCCTCACCCTCGTGAAAAACATTGTGTAACGAGGCCAAAGGGAAGGCCTGAAGACAAGGCTGCAAAAAGTACAAAAGAAGGAGGACCAGTTCAAGGGGCTGTGGAAGCAGAAGCCACTGTTAAACAGGCTACAACAGCAACACCACCAAAAGAGCAATTGGACCCAATACAAGAAGAAGCTGTCCCAATTGTGCAAGAAGGTGAAGTTACTGAACCAAGGGTTGAAGAAGCAGCTGTACCAAGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

301

Amino Acids

33.19

Weight (kDa)

5.94

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PB1-like	PF26130	27 - 99	2.6e-06	PB1-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01840
fragaria_vesca	FvH4_6g53170 FvH4_6g53170 FvH4_6g53170
malus_domestica	MD09G1013400.v1.1 MD17G1014100.v1.1
prunus_persica	Prupe.3G303700_v2.0.a1
pyrus_communis	pycom111g01140
rosa_chinensis	RchiOBHm_Chr2g0175211
rosa_laevigata	RLG00000022311
rosa_multiflora	Rmu_sc0003920.1_g000020 Rmu_sc0010642.1_g000015 Rmu_sc0043138.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077490
rosa_rugosa	Rorug02G0581400 Rorug02G0581500
rosa_samantha	Rh2AG662100 Rh2BG673300 Rh2CG636500 Rh2DG687200
rosa_wichuraiana	Rw2G054300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	31
AccB1I	GGYRCC	3 cut(s)	31, 506, 532
AclWI	GGATC	1 cut(s)	153
AcuI	CTGAAG	2 cut(s)	351, 726
AdeI	CACNNNGTG	1 cut(s)	557
AfaI	GTAC	3 cut(s)	33, 727, 894
AfiI	CCNNNNNNNGG	1 cut(s)	749
AflII	CTTAAG	1 cut(s)	343
AgsI	TTSAA	4 cut(s)	184, 373, 749, 881
AjnI	CCWGG	2 cut(s)	528, 622
AleI	CACNNNNGTG	1 cut(s)	666
AloI	GAACNNNNNNTCC	2 cut(s)	729, 761
AluBI	AGCT	7 cut(s)	56, 140, 259, 436, 577, 836, 890
AluI	AGCT	7 cut(s)	56, 140, 259, 436, 577, 836, 890
AlwI	GGATC	1 cut(s)	153
AoxI	GGCC	4 cut(s)	347, 443, 689, 701
ApeKI	GCWGC	2 cut(s)	716, 887
Asp718I	GGTACC	1 cut(s)	31
AspS9I	GGNCC	2 cut(s)	740, 817
AsuHPI	GGTGA	3 cut(s)	569, 653, 869
AsuNHI	GCTAGC	1 cut(s)	52
AvaII	GGWCC	2 cut(s)	740, 817
BanI	GGYRCC	3 cut(s)	31, 506, 532
BarI	GAAGNNNNNNTAC	1 cut(s)	876
BauI	CACGAG	1 cut(s)	666
BbsI	GAAGAC	1 cut(s)	714
BbvCI	CCTCAGC	1 cut(s)	578
BbvI	GCAGC	2 cut(s)	703, 899
BccI	CCATC	6 cut(s)	22, 65, 86, 207, 358, 608
BcgI	CGANNNNNNTGC	2 cut(s)	183, 217
BciT130I	CCWGG	2 cut(s)	530, 624
BfaI	CTAG	4 cut(s)	53, 57, 89, 404
BfrI	CTTAAG	1 cut(s)	343
BisI	GCNGC	2 cut(s)	717, 888
BlsI	GCNGC	2 cut(s)	718, 889
Bme1390I	CCNGG	2 cut(s)	530, 624
Bme18I	GGWCC	2 cut(s)	740, 817
BmgT120I	GGNCC	2 cut(s)	740, 817
BmiI	GGNNCC	4 cut(s)	33, 508, 534, 819
BmrFI	CCNGG	2 cut(s)	530, 624
BmsI	GCATC	4 cut(s)	11, 207, 223, 229
BmtI	GCTAGC	1 cut(s)	56
BpiI	GAAGAC	1 cut(s)	714
Bpu10I	CCTNAGC	1 cut(s)	578
BsaJI	CCNNGG	2 cut(s)	623, 872
BsaXI	ACNNNNNCTCC	6 cut(s)	453, 465, 483, 495, 729, 759
Bsc4I	CCNNNNNNNGG	1 cut(s)	749
Bse1I	ACTGG	3 cut(s)	304, 520, 743
Bse3DI	GCAATG	1 cut(s)	211
BseBI	CCWGG	2 cut(s)	530, 624
BseDI	CCNNGG	2 cut(s)	623, 872
BseGI	GGATG	5 cut(s)	33, 218, 222, 343, 619
BseLI	CCNNNNNNNGG	1 cut(s)	749
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	569
BseNI	ACTGG	3 cut(s)	304, 520, 743
BseRI	GAGGAG	2 cut(s)	325, 328
BseXI	GCAGC	2 cut(s)	703, 899
BsgI	GTGCAG	1 cut(s)	507
BshFI	GGCC	4 cut(s)	349, 445, 691, 703
BshNI	GGYRCC	3 cut(s)	31, 506, 532
BsiSI	CCGG	1 cut(s)	25
BslFI	GGGAC	1 cut(s)	824
BslI	CCNNNNNNNGG	1 cut(s)	749
BsmFI	GGGAC	1 cut(s)	824
BsnI	GGCC	4 cut(s)	349, 445, 691, 703
Bsp143I	GATC	1 cut(s)	145
BspANI	GGCC	4 cut(s)	349, 445, 691, 703
BspCNI	CTCAG	1 cut(s)	570
BspLI	GGNNCC	4 cut(s)	33, 508, 534, 819
BspOI	GCTAGC	1 cut(s)	56
BspPI	GGATC	1 cut(s)	153
BspT107I	GGYRCC	3 cut(s)	31, 506, 532
BspTI	CTTAAG	1 cut(s)	343
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	3 cut(s)	304, 520, 743
BssECI	CCNNGG	2 cut(s)	623, 872
BssMI	GATC	1 cut(s)	145
BssSI	CACGAG	1 cut(s)	666
BssT1I	CCWWGG	1 cut(s)	872
Bst2BI	CACGAG	1 cut(s)	666
Bst2UI	CCWGG	2 cut(s)	530, 624
Bst4CI	ACNGT	1 cut(s)	775
Bst6I	CTCTTC	1 cut(s)	327
BstAFI	CTTAAG	1 cut(s)	343
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	2 cut(s)	521, 578
BstF5I	GGATG	5 cut(s)	33, 218, 222, 343, 619
BstKTI	GATC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	3 cut(s)	442, 761, 791
BstNI	CCWGG	2 cut(s)	530, 624
BstSCI	CCNGG	2 cut(s)	528, 622
BstV1I	GCAGC	2 cut(s)	703, 899
BstV2I	GAAGAC	1 cut(s)	714
BstX2I	RGATCY	1 cut(s)	145
BstXI	CCANNNNNNTGG	1 cut(s)	357
BstYI	RGATCY	1 cut(s)	145
BsuRI	GGCC	4 cut(s)	349, 445, 691, 703
BtsCI	GGATG	5 cut(s)	33, 218, 222, 343, 619
BtsIMutI	CAGTG	2 cut(s)	292, 771
Cac8I	GCNNGC	1 cut(s)	54
Cfr13I	GGNCC	2 cut(s)	740, 817
CsiI	ACCWGGT	1 cut(s)	528
Csp6I	GTAC	3 cut(s)	32, 726, 893
CspCI	CAANNNNNGTGG	2 cut(s)	55, 90
CviAII	CATG	1 cut(s)	117
CviQI	GTAC	3 cut(s)	32, 726, 893
DdeI	CTNAG	2 cut(s)	521, 578
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
DraIII	CACNNNGTG	1 cut(s)	557
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco130I	CCWWGG	1 cut(s)	872
Eco147I	AGGCCT	1 cut(s)	703
Eco47I	GGWCC	2 cut(s)	740, 817
Eco57I	CTGAAG	2 cut(s)	351, 726
EcoRII	CCWGG	2 cut(s)	528, 622
EcoT14I	CCWWGG	1 cut(s)	872
ErhI	CCWWGG	1 cut(s)	872
FaeI	CATG	1 cut(s)	120
FaiI	YATR	8 cut(s)	44, 85, 118, 137, 156, 175, 294, 609
FaqI	GGGAC	1 cut(s)	824
FatI	CATG	1 cut(s)	116
Fnu4HI	GCNGC	2 cut(s)	717, 888
FokI	GGATG	5 cut(s)	40, 225, 229, 350, 626
Fsp4HI	GCNGC	2 cut(s)	717, 888
FspBI	CTAG	4 cut(s)	53, 57, 89, 404
GluI	GCNGC	2 cut(s)	717, 888
HaeIII	GGCC	4 cut(s)	349, 445, 691, 703
HapII	CCGG	1 cut(s)	25
Hin1II	CATG	1 cut(s)	120
HincII	GTYRAC	1 cut(s)	381
HindII	GTYRAC	1 cut(s)	381
HinfI	GANTC	2 cut(s)	187, 564
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	3 cut(s)	569, 653, 869
Hpy166II	GTNNAC	1 cut(s)	381
Hpy188I	TCNGA	1 cut(s)	355
Hpy188III	TCNNGA	2 cut(s)	184, 668
Hpy8I	GTNNAC	1 cut(s)	381
HpyAV	CCTTC	3 cut(s)	693, 728, 848
HpyCH4III	ACNGT	1 cut(s)	775
HpyCH4V	TGCA	7 cut(s)	204, 236, 242, 428, 488, 719, 850
HpyF10VI	GCNNNNNNNGC	3 cut(s)	442, 761, 791
HpyF3I	CTNAG	2 cut(s)	521, 578
Hsp92II	CATG	1 cut(s)	120
KpnI	GGTACC	1 cut(s)	35
Kzo9I	GATC	1 cut(s)	145
Lsp1109I	GCAGC	2 cut(s)	703, 899
LweI	GCATC	4 cut(s)	11, 207, 223, 229
MabI	ACCWGGT	1 cut(s)	528
MaeI	CTAG	4 cut(s)	53, 57, 89, 404
MaeIII	GTNAC	4 cut(s)	7, 524, 682, 862
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	6 cut(s)	91, 344, 601, 719, 842, 893
MfeI	CAATTG	3 cut(s)	243, 812, 843
MflI	RGATCY	1 cut(s)	145
MluCI	AATT	3 cut(s)	243, 812, 843
MmeI	TCCRAC	1 cut(s)	451
MseI	TTAA	5 cut(s)	63, 225, 344, 777, 904
MslI	CAYNNNNRTG	1 cut(s)	666
MspA1I	CMGCKG	1 cut(s)	890
MspCI	CTTAAG	1 cut(s)	343
MspI	CCGG	1 cut(s)	25
MspR9I	CCNGG	2 cut(s)	530, 624
MunI	CAATTG	3 cut(s)	243, 812, 843
MvaI	CCWGG	2 cut(s)	530, 624
MwoI	GCNNNNNNNGC	3 cut(s)	442, 761, 791
NdeII	GATC	1 cut(s)	145
NheI	GCTAGC	1 cut(s)	52
NlaIII	CATG	1 cut(s)	120
NlaIV	GGNNCC	4 cut(s)	33, 508, 534, 819
NmuCI	GTSAC	1 cut(s)	524
OliI	CACNNNNGTG	1 cut(s)	666
PceI	AGGCCT	1 cut(s)	703
PfeI	GAWTC	2 cut(s)	187, 564
PkrI	GCNGC	2 cut(s)	718, 889
Psp6I	CCWGG	2 cut(s)	528, 622
PspGI	CCWGG	2 cut(s)	528, 622
PspN4I	GGNNCC	4 cut(s)	33, 508, 534, 819
PspPI	GGNCC	2 cut(s)	740, 817
PsuI	RGATCY	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	890
RsaI	GTAC	3 cut(s)	33, 727, 894
RsaNI	GTAC	3 cut(s)	32, 726, 893
RseI	CAYNNNNRTG	1 cut(s)	666
SaqAI	TTAA	5 cut(s)	63, 225, 344, 777, 904
SatI	GCNGC	2 cut(s)	717, 888
Sau3AI	GATC	1 cut(s)	145
Sau96I	GGNCC	2 cut(s)	740, 817
ScrFI	CCNGG	2 cut(s)	530, 624
SexAI	ACCWGGT	1 cut(s)	528
SfaNI	GCATC	4 cut(s)	11, 207, 223, 229
SinI	GGWCC	2 cut(s)	740, 817
SmiMI	CAYNNNNRTG	1 cut(s)	666
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
Sse9I	AATT	3 cut(s)	243, 812, 843
SseBI	AGGCCT	1 cut(s)	703
SspMI	CTAG	4 cut(s)	53, 57, 89, 404
StuI	AGGCCT	1 cut(s)	703
StyD4I	CCNGG	2 cut(s)	528, 622
StyI	CCWWGG	1 cut(s)	872
TaaI	ACNGT	1 cut(s)	775
TaqI	TCGA	1 cut(s)	193
TasI	AATT	3 cut(s)	243, 812, 843
TatI	WGTACW	1 cut(s)	725
TfiI	GAWTC	2 cut(s)	187, 564
Tru1I	TTAA	5 cut(s)	63, 225, 344, 777, 904
Tru9I	TTAA	5 cut(s)	63, 225, 344, 777, 904
TscAI	CASTG	2 cut(s)	292, 778
TseFI	GTSAC	1 cut(s)	524
TseI	GCWGC	2 cut(s)	716, 887
Tsp45I	GTSAC	1 cut(s)	524
TspDTI	ATGAA	1 cut(s)	162
TspRI	CASTG	2 cut(s)	292, 778
Vha464I	CTTAAG	1 cut(s)	343
VpaK11BI	GGWCC	2 cut(s)	740, 817
XspI	CTAG	4 cut(s)	53, 57, 89, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.