Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0009956

Physical Location & Seq

Genomic Coordinates Reverse (-)

87777055 .. 87779766

Gene Structure 2712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG662100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2046 bp

ATGGCTGCTGCTTTGTTCACTAGTGAGCAGCTCTACTTGACATTATTCTTCTTCATCGTCTCGCTTCTTGTGTCTGCACTTGGACTACAGAACCAACCGCTAAGCTGCGAGTCCGAATCTCCAGATGCTTCTTCTGCCTACCACTGCAGTACTAGTACTAGTGGATCAAATGGATCATCATCATCATCACTCAACCACTGTGCCACATTTGCAATTCTTCGAACCAACTCATACTACTCCTCTCTCTTGAACCTGAGTTCTTACTTGGGGATCAACCGGTTTGTGATTGCAGAAGCAAATGGCTTTTCAGCAGACACAGAGTTTCTTCCTAAAGAACAGCCTTTGTTGATACCAATTGATTGCAAATGCAGCAATGGGAGGTTGTTTCAAGCGCAGTTGACAAAAACCACCATCAGAGGTGAGAGCTTTTATGGCATTGCTGAAGCACTAGAGGGCTTGACAACTTGCAAAGCTATCCGAGAGAAGAACCCTGGTGTCTCGCCCTGGGAACTTGCTGATAAAGTTGAGTTACACATTCCTTTGAGATGTGCTTGTCCCTCTAACTCATCTCAGTCAACACTCTTGCTTTCTTATCCAGTGAATGAAGGTGATACCATTTCTTCTTTGGCCATTCAATTCAATACTACTCAAGAAGCTATCATATCTGCAAATAACAGATCAACCTTTAGACCTGAAAACAGCTTAGTGCCACTAACATCTCTTCTGATTCCACTCAATGCAAAACCGATACTTGGTCCTCTAGAAAAGCCCCGCGAACCAAACTTGCGTTTTCCAGCAACTAGCGTTCCAGCTATTAGTCCACACAAGAAGAAAGCAAAAATGCGCAGGGTTGGACTATATGTCACGATCATTGTGGTAGTTGTTGCAGCTGGCATTGCAATTGCAGCGGCTTTGTTGGTAATTCAGTTGAGGAAGAAGAAACAGATCAGTTCATCCAAAGGAGTTGTTGATTTGGAACTACAGCAGCTCAGTCTAAGCGTAAGAACCACAAGTGACAAGAAGGTCTCATTTGAGGGATCTCAAGATACTTTAGATGGTCACATTGTTGAAGCCACCACGCCATGCAAAGTGCTGGTGGAGACATATACCATGGAGGAGCTGAGAAAAGCAACCGAGGACTTCAGTTCAAGCAACCACATTGAAGGGTCTGTATACCATGGCCGTCTCAGTGGCAACAACTTGGCAATAAAGCGCAAGCGACATGACACCATCTCAAGAATCGAGTTTGGGCTTTTCCATGATGCAATTCACCACCATCCAAACATAATGAGGCTGTTGGGGACCTGTTTGACAGAGACTCAAGATTCATTTCTGGTTTTCGAGTATGCAAAGAATGGATCGTTGAAGGATTGGCTTCATGGTGGATTGGCAATTAAAAACCAGTTCATTGCCTCGTGTGATTGTTTCTTGACATGGAGCCAAAGGCTGAGGATATGTCTTGATGTGGCCCTGGCATTACAGTACATGCACCACATAATGAACCCAAGTTATGTGCATCGAAATGTGAAGAGCCGAAACATCTTCTTGGATGAAGAATTCAATGCCAAGATTGGAAACTTTGGAATGGCAAAGTGTGTTGAAAATGATACAGAAAATTTGGCTCCTGAATATGTTCACCAGGGTGTGGTTTCTCCAAGCACTGATATATTTGCTTATGGAGTAGTGTTGTTGGAGGTCTTGTGCGGGCAAAAGACATTAACCAAGCCTAGTGAGATGGGGCAGGGGAAACATTTTTGGCTGTCAGAGAAAATCAAATGCATATTGCAGTCAGACAATGCAGATGAGCTGAGGGAATGGATGGACAGCGCATTGGGTGAGAATTATTCTTTTGATGCAGCTCTCACATTAGCGAATCTTGCGAGTGCTTGTGTAAATGAAGACCCTTGTTTGAGACCAAGTGCAGGAGAAGTTGTTGAGAAACTTTCGAGAATGGTGGAAGAGTACGCGGTAGAAGGAGAGAATATGTTGATGAGTGAGAGCTGTTCCAAACCTCTGGTGAAGGCAGCTGCTGCAACCATTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

681

Amino Acids

74.85

Weight (kDa)

6.17

Isoelectric Point (pI)

46.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LysM1_NFP_LYK	PF23446	67 - 123	2.3e-10	NFP/LYK LysM1 domain
LysM2_CERK1_LYK3_4_5	PF23472	129 - 182	9.6e-13	LYK3/4/5 LysM2 domain
LysM3_LYK4_5	PF23473	195 - 245	9.2e-10	LYK4/5 LysM3 domain
Pkinase	PF00069	404 - 646	7.9e-26	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	422 - 648	1.1e-26	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01840
fragaria_vesca	FvH4_6g53170 FvH4_6g53170 FvH4_6g53170
malus_domestica	MD09G1013400.v1.1 MD17G1014100.v1.1
prunus_persica	Prupe.3G303700_v2.0.a1
pyrus_communis	pycom111g01140
rosa_chinensis	RchiOBHm_Chr2g0175211
rosa_laevigata	RLG00000022311
rosa_multiflora	Rmu_sc0003920.1_g000020 Rmu_sc0010642.1_g000015 Rmu_sc0043138.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077490
rosa_rugosa	Rorug02G0581400 Rorug02G0581500
rosa_samantha	Rh2AG662100 Rh2BG673300 Rh2CG636500 Rh2DG687200
rosa_wichuraiana	Rw2G054300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1022
Acc16I	TGCGCA	1 cut(s)	845
AccB7I	CCANNNNNTGG	1 cut(s)	1645
AccI	GTMKAC	1 cut(s)	1173
AccII	CGCG	2 cut(s)	774, 1967
AciI	CCGC	5 cut(s)	98, 772, 908, 1704, 1967
AclWI	GGATC	5 cut(s)	172, 181, 278, 1045, 1366
AcoI	YGGCCR	2 cut(s)	627, 1180
AcsI	RAATTY	2 cut(s)	1556, 1615
AcuI	CTGAAG	2 cut(s)	462, 1126
AfaI	GTAC	4 cut(s)	151, 157, 1484, 1964
AfiI	CCNNNNNNNGG	3 cut(s)	752, 1645, 1922
AgeI	ACCGGT	1 cut(s)	276
AhdI	GACNNNNNGTC	1 cut(s)	860
AhlI	ACTAGT	3 cut(s)	20, 152, 158
AjnI	CCWGG	4 cut(s)	490, 503, 1470, 1638
AleI	CACNNNNGTG	1 cut(s)	1641
Alw26I	GTCTC	7 cut(s)	64, 502, 1030, 1094, 1190, 1310, 1906
AlwI	GGATC	5 cut(s)	172, 181, 278, 1045, 1366
AlwNI	CAGNNNCTG	1 cut(s)	2030
AoxI	GGCC	3 cut(s)	627, 1180, 1467
ApoI	RAATTY	2 cut(s)	1556, 1615
AsiGI	ACCGGT	1 cut(s)	276
Asp700I	GAANNNNTTC	1 cut(s)	1632
AspLEI	GCGC	4 cut(s)	394, 846, 1215, 1829
AspS9I	GGNCC	3 cut(s)	755, 1302, 1468
AsuHPI	GGTGA	6 cut(s)	431, 620, 1262, 1628, 1847, 2029
AsuII	TTCGAA	1 cut(s)	220
AvaII	GGWCC	2 cut(s)	755, 1302
BalI	TGGCCA	1 cut(s)	629
BauI	CACGAG	1 cut(s)	1414
BbsI	GAAGAC	1 cut(s)	1905
BbvCI	CCTCAGC	2 cut(s)	1448, 1808
BccI	CCATC	6 cut(s)	419, 1049, 1238, 1284, 1729, 1813
BceAI	ACGGC	1 cut(s)	1167
BciT130I	CCWGG	4 cut(s)	492, 505, 1472, 1640
BcoDI	GTCTC	7 cut(s)	64, 502, 1030, 1094, 1190, 1310, 1906
BcuI	ACTAGT	3 cut(s)	20, 152, 158
BfaI	CTAG	7 cut(s)	21, 153, 159, 449, 761, 801, 1728
BfmI	CTRYAG	3 cut(s)	86, 145, 980
BlpI	GCTNAGC	1 cut(s)	101
BmcAI	AGTACT	2 cut(s)	151, 157
Bme1390I	CCNGG	4 cut(s)	492, 505, 1472, 1640
Bme18I	GGWCC	2 cut(s)	755, 1302
BmeRI	GACNNNNNGTC	1 cut(s)	860
BmgT120I	GGNCC	3 cut(s)	755, 1302, 1468
BmiI	GGNNCC	3 cut(s)	1303, 1439, 1623
BmrFI	CCNGG	4 cut(s)	492, 505, 1472, 1640
BmsI	GCATC	4 cut(s)	115, 1252, 1525, 1843
BpiI	GAAGAC	1 cut(s)	1905
BpmI	CTGGAG	1 cut(s)	105
Bpu10I	CCTNAGC	2 cut(s)	1448, 1808
Bpu1102I	GCTNAGC	1 cut(s)	101
Bpu14I	TTCGAA	1 cut(s)	220
BpuEI	CTTGAG	4 cut(s)	633, 1026, 1219, 1305
BsaBI	GATNNNNATC	1 cut(s)	178
BsaI	GGTCTC	2 cut(s)	1030, 1906
BsaJI	CCNNGG	8 cut(s)	490, 503, 504, 1110, 1134, 1177, 1470, 1639
BsaWI	WCCGGW	1 cut(s)	276
BsaXI	ACNNNNNCTCC	4 cut(s)	1685, 1715, 1917, 1947
Bsc4I	CCNNNNNNNGG	3 cut(s)	752, 1645, 1922
Bse118I	RCCGGY	1 cut(s)	276
Bse1I	ACTGG	2 cut(s)	596, 1402
Bse3DI	GCAATG	4 cut(s)	379, 435, 894, 1407
Bse8I	GATNNNNATC	1 cut(s)	178
BseBI	CCWGG	4 cut(s)	492, 505, 1472, 1640
BseDI	CCNNGG	8 cut(s)	490, 503, 504, 1110, 1134, 1177, 1470, 1639
BseGI	GGATG	4 cut(s)	953, 1276, 1555, 1824
BseJI	GATNNNNATC	1 cut(s)	178
BseLI	CCNNNNNNNGG	3 cut(s)	752, 1645, 1922
BseMI	GCAATG	4 cut(s)	379, 435, 894, 1407
BseMII	CTCAG	7 cut(s)	245, 584, 1003, 1112, 1201, 1439, 1799
BseNI	ACTGG	2 cut(s)	596, 1402
BseRI	GAGGAG	2 cut(s)	229, 1130
BsgI	GTGCAG	2 cut(s)	60, 1941
Bsh1236I	CGCG	2 cut(s)	774, 1967
BshFI	GGCC	3 cut(s)	629, 1182, 1469
BshTI	ACCGGT	1 cut(s)	276
BsiSI	CCGG	1 cut(s)	277
BslFI	GGGAC	2 cut(s)	540, 1315
BslI	CCNNNNNNNGG	3 cut(s)	752, 1645, 1922
BsmAI	GTCTC	7 cut(s)	64, 502, 1030, 1094, 1190, 1310, 1906
BsmBI	CGTCTC	2 cut(s)	64, 1190
BsmFI	GGGAC	2 cut(s)	540, 1315
BsnI	GGCC	3 cut(s)	629, 1182, 1469
Bso31I	GGTCTC	2 cut(s)	1030, 1906
Bsp119I	TTCGAA	1 cut(s)	220
Bsp143I	GATC	8 cut(s)	164, 173, 270, 677, 867, 945, 1037, 1358
Bsp1720I	GCTNAGC	1 cut(s)	101
Bsp19I	CCATGG	2 cut(s)	1110, 1177
BspACI	CCGC	5 cut(s)	98, 772, 908, 1704, 1967
BspANI	GGCC	3 cut(s)	629, 1182, 1469
BspCNI	CTCAG	7 cut(s)	246, 583, 1002, 1113, 1200, 1440, 1800
BspFNI	CGCG	2 cut(s)	774, 1967
BspLI	GGNNCC	3 cut(s)	1303, 1439, 1623
BspMAI	CTGCAG	1 cut(s)	149
BspPI	GGATC	5 cut(s)	172, 181, 278, 1045, 1366
BspQI	GCTCTTC	1 cut(s)	1523
BspT104I	TTCGAA	1 cut(s)	220
BspTNI	GGTCTC	2 cut(s)	1030, 1906
BsrDI	GCAATG	4 cut(s)	379, 435, 894, 1407
BsrFI	RCCGGY	1 cut(s)	276
BsrI	ACTGG	2 cut(s)	596, 1402
BssAI	RCCGGY	1 cut(s)	276
BssECI	CCNNGG	8 cut(s)	490, 503, 504, 1110, 1134, 1177, 1470, 1639
BssMI	GATC	8 cut(s)	164, 173, 270, 677, 867, 945, 1037, 1358
BssNAI	GTATAC	1 cut(s)	1174
BssSI	CACGAG	1 cut(s)	1414
BssT1I	CCWWGG	2 cut(s)	1110, 1177
Bst1107I	GTATAC	1 cut(s)	1174
Bst2BI	CACGAG	1 cut(s)	1414
Bst2UI	CCWGG	4 cut(s)	492, 505, 1472, 1640
Bst4CI	ACNGT	2 cut(s)	200, 1482
Bst6I	CTCTTC	3 cut(s)	726, 1523, 1953
BstAPI	GCANNNNNTGC	1 cut(s)	2030
BstBI	TTCGAA	1 cut(s)	220
BstC8I	GCNNGC	3 cut(s)	892, 1217, 1706
BstDSI	CCRYGG	2 cut(s)	1110, 1177
BstF5I	GGATG	4 cut(s)	953, 1276, 1555, 1824
BstFNI	CGCG	2 cut(s)	774, 1967
BstHHI	GCGC	4 cut(s)	394, 846, 1215, 1829
BstKTI	GATC	8 cut(s)	167, 176, 273, 680, 870, 948, 1040, 1361
BstMAI	GTCTC	7 cut(s)	64, 502, 1030, 1094, 1190, 1310, 1906
BstMBI	GATC	8 cut(s)	164, 173, 270, 677, 867, 945, 1037, 1358
BstMWI	GCNNNNNNNGC	8 cut(s)	134, 209, 369, 432, 896, 905, 1877, 2030
BstNI	CCWGG	4 cut(s)	492, 505, 1472, 1640
BstNSI	RCATGY	1 cut(s)	1489
BstSCI	CCNGG	4 cut(s)	490, 503, 1470, 1638
BstSFI	CTRYAG	3 cut(s)	86, 145, 980
BstUI	CGCG	2 cut(s)	774, 1967
BstV2I	GAAGAC	1 cut(s)	1905
BstX2I	RGATCY	1 cut(s)	1037
BstXI	CCANNNNNNTGG	1 cut(s)	2014
BstYI	RGATCY	1 cut(s)	1037
BstZ17I	GTATAC	1 cut(s)	1174
BsuRI	GGCC	3 cut(s)	629, 1182, 1469
BtgI	CCRYGG	2 cut(s)	1110, 1177
BtsCI	GGATG	4 cut(s)	953, 1276, 1555, 1824
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	5 cut(s)	142, 196, 603, 1195, 1659
Cac8I	GCNNGC	3 cut(s)	892, 1217, 1706
CaiI	CAGNNNCTG	1 cut(s)	2030
CfoI	GCGC	4 cut(s)	394, 846, 1215, 1829
Cfr10I	RCCGGY	1 cut(s)	276
Cfr13I	GGNCC	3 cut(s)	755, 1302, 1468
Csp6I	GTAC	4 cut(s)	150, 156, 1483, 1963
CspAI	ACCGGT	1 cut(s)	276
CviAII	CATG	8 cut(s)	1083, 1111, 1178, 1223, 1259, 1379, 1434, 1486
CviQI	GTAC	4 cut(s)	150, 156, 1483, 1963
DpnI	GATC	8 cut(s)	166, 175, 272, 679, 869, 947, 1039, 1360
DpnII	GATC	8 cut(s)	164, 173, 270, 677, 867, 945, 1037, 1358
DrdI	GACNNNNNNGTC	1 cut(s)	1022
DriI	GACNNNNNGTC	1 cut(s)	860
DseDI	GACNNNNNNGTC	1 cut(s)	1022
EaeI	YGGCCR	2 cut(s)	627, 1180
Eam1104I	CTCTTC	3 cut(s)	726, 1523, 1953
Eam1105I	GACNNNNNGTC	1 cut(s)	860
EarI	CTCTTC	3 cut(s)	726, 1523, 1953
Eco130I	CCWWGG	2 cut(s)	1110, 1177
Eco31I	GGTCTC	2 cut(s)	1030, 1906
Eco47I	GGWCC	2 cut(s)	755, 1302
Eco57I	CTGAAG	2 cut(s)	462, 1126
EcoO109I	RGGNCCY	1 cut(s)	1302
EcoRI	GAATTC	1 cut(s)	1556
EcoRII	CCWGG	4 cut(s)	490, 503, 1470, 1638
EcoT14I	CCWWGG	2 cut(s)	1110, 1177
EcoT22I	ATGCAT	1 cut(s)	1781
ErhI	CCWWGG	2 cut(s)	1110, 1177
Esp3I	CGTCTC	2 cut(s)	64, 1190
FaeI	CATG	8 cut(s)	1086, 1114, 1181, 1226, 1262, 1382, 1437, 1489
FaqI	GGGAC	2 cut(s)	540, 1315
FatI	CATG	8 cut(s)	1082, 1110, 1177, 1222, 1258, 1378, 1433, 1485
FauI	CCCGC	2 cut(s)	779, 1697
FblI	GTMKAC	1 cut(s)	1173
FokI	GGATG	4 cut(s)	940, 1263, 1562, 1831
FspBI	CTAG	7 cut(s)	21, 153, 159, 449, 761, 801, 1728
FspI	TGCGCA	1 cut(s)	845
GlaI	GCGC	4 cut(s)	393, 845, 1214, 1828
GsuI	CTGGAG	1 cut(s)	105
HaeIII	GGCC	3 cut(s)	629, 1182, 1469
HapII	CCGG	1 cut(s)	277
HhaI	GCGC	4 cut(s)	394, 846, 1215, 1829
Hin1II	CATG	8 cut(s)	1086, 1114, 1181, 1226, 1262, 1382, 1437, 1489
Hin6I	GCGC	4 cut(s)	392, 844, 1213, 1827
HinP1I	GCGC	4 cut(s)	392, 844, 1213, 1827
HincII	GTYRAC	2 cut(s)	399, 576
HindII	GTYRAC	2 cut(s)	399, 576
HinfI	GANTC	7 cut(s)	110, 116, 727, 1239, 1318, 1325, 1873
HpaII	CCGG	1 cut(s)	277
HphI	GGTGA	6 cut(s)	431, 620, 1262, 1628, 1847, 2029
Hpy166II	GTNNAC	6 cut(s)	18, 399, 576, 821, 1174, 1636
Hpy188I	TCNGA	6 cut(s)	115, 416, 479, 726, 1765, 1792
Hpy8I	GTNNAC	6 cut(s)	18, 399, 576, 821, 1174, 1636
HpyAV	CCTTC	6 cut(s)	599, 1015, 1157, 1360, 1967, 2014
HpyCH4III	ACNGT	2 cut(s)	200, 1482
HpyF10VI	GCNNNNNNNGC	8 cut(s)	134, 209, 369, 432, 896, 905, 1877, 2030
Hsp92II	CATG	8 cut(s)	1086, 1114, 1181, 1226, 1262, 1382, 1437, 1489
HspAI	GCGC	4 cut(s)	392, 844, 1213, 1827
Kzo9I	GATC	8 cut(s)	164, 173, 270, 677, 867, 945, 1037, 1358
LguI	GCTCTTC	1 cut(s)	1523
LmnI	GCTCC	3 cut(s)	1117, 1437, 1627
LweI	GCATC	4 cut(s)	115, 1252, 1525, 1843
MaeI	CTAG	7 cut(s)	21, 153, 159, 449, 761, 801, 1728
MaeIII	GTNAC	4 cut(s)	528, 862, 1013, 1058
MalI	GATC	8 cut(s)	166, 175, 272, 679, 869, 947, 1039, 1360
MboI	GATC	8 cut(s)	164, 173, 270, 677, 867, 945, 1037, 1358
MfeI	CAATTG	2 cut(s)	354, 900
MflI	RGATCY	1 cut(s)	1037
MlsI	TGGCCA	1 cut(s)	629
MluNI	TGGCCA	1 cut(s)	629
MlyI	GAGTC	2 cut(s)	119, 1312
MmeI	TCCRAC	2 cut(s)	832, 1671
Mox20I	TGGCCA	1 cut(s)	629
Mph1103I	ATGCAT	1 cut(s)	1781
MroXI	GAANNNNTTC	1 cut(s)	1632
MscI	TGGCCA	1 cut(s)	629
MseI	TTAA	2 cut(s)	1395, 1718
MslI	CAYNNNNRTG	2 cut(s)	1521, 1641
Msp20I	TGGCCA	1 cut(s)	629
MspA1I	CMGCKG	3 cut(s)	890, 908, 2027
MspI	CCGG	1 cut(s)	277
MspR9I	CCNGG	4 cut(s)	492, 505, 1472, 1640
MunI	CAATTG	2 cut(s)	354, 900
MvaI	CCWGG	4 cut(s)	492, 505, 1472, 1640
MvnI	CGCG	2 cut(s)	774, 1967
MwoI	GCNNNNNNNGC	8 cut(s)	134, 209, 369, 432, 896, 905, 1877, 2030
NcoI	CCATGG	2 cut(s)	1110, 1177
NdeII	GATC	8 cut(s)	164, 173, 270, 677, 867, 945, 1037, 1358
NlaIII	CATG	8 cut(s)	1086, 1114, 1181, 1226, 1262, 1382, 1437, 1489
NlaIV	GGNNCC	3 cut(s)	1303, 1439, 1623
NmuCI	GTSAC	3 cut(s)	862, 1013, 1058
NsbI	TGCGCA	1 cut(s)	845
NsiI	ATGCAT	1 cut(s)	1781
NspI	RCATGY	1 cut(s)	1489
NspV	TTCGAA	1 cut(s)	220
OliI	CACNNNNGTG	1 cut(s)	1641
PasI	CCCWGGG	1 cut(s)	504
PciSI	GCTCTTC	1 cut(s)	1523
PdmI	GAANNNNTTC	1 cut(s)	1632
PfeI	GAWTC	5 cut(s)	116, 727, 1239, 1325, 1873
PflMI	CCANNNNNTGG	1 cut(s)	1645
PinAI	ACCGGT	1 cut(s)	276
PleI	GAGTC	2 cut(s)	118, 1312
PpsI	GAGTC	2 cut(s)	118, 1312
PpuMI	RGGWCCY	1 cut(s)	1302
Psp5II	RGGWCCY	1 cut(s)	1302
Psp6I	CCWGG	4 cut(s)	490, 503, 1470, 1638
PspGI	CCWGG	4 cut(s)	490, 503, 1470, 1638
PspN4I	GGNNCC	3 cut(s)	1303, 1439, 1623
PspPI	GGNCC	3 cut(s)	755, 1302, 1468
PspPPI	RGGWCCY	1 cut(s)	1302
PstI	CTGCAG	1 cut(s)	149
PstNI	CAGNNNCTG	1 cut(s)	2030
PsuI	RGATCY	1 cut(s)	1037
PvuII	CAGCTG	2 cut(s)	890, 2027
RsaI	GTAC	4 cut(s)	151, 157, 1484, 1964
RsaNI	GTAC	4 cut(s)	150, 156, 1483, 1963
RseI	CAYNNNNRTG	2 cut(s)	1521, 1641
SapI	GCTCTTC	1 cut(s)	1523
SaqAI	TTAA	2 cut(s)	1395, 1718
Sau3AI	GATC	8 cut(s)	164, 173, 270, 677, 867, 945, 1037, 1358
Sau96I	GGNCC	3 cut(s)	755, 1302, 1468
ScaI	AGTACT	2 cut(s)	151, 157
SchI	GAGTC	2 cut(s)	119, 1312
ScrFI	CCNGG	4 cut(s)	492, 505, 1472, 1640
SfaNI	GCATC	4 cut(s)	115, 1252, 1525, 1843
SfcI	CTRYAG	3 cut(s)	86, 145, 980
SfuI	TTCGAA	1 cut(s)	220
SinI	GGWCC	2 cut(s)	755, 1302
SmiMI	CAYNNNNRTG	2 cut(s)	1521, 1641
SmlI	CTYRAG	4 cut(s)	648, 1041, 1234, 1320
SmoI	CTYRAG	4 cut(s)	648, 1041, 1234, 1320
SpeI	ACTAGT	3 cut(s)	20, 152, 158
SsiI	CCGC	5 cut(s)	98, 772, 908, 1704, 1967
SspMI	CTAG	7 cut(s)	21, 153, 159, 449, 761, 801, 1728
StyD4I	CCNGG	4 cut(s)	490, 503, 1470, 1638
StyI	CCWWGG	2 cut(s)	1110, 1177
TaaI	ACNGT	2 cut(s)	200, 1482
TaqI	TCGA	5 cut(s)	220, 1242, 1341, 1519, 1946
TatI	WGTACW	3 cut(s)	149, 155, 1482
TauI	GCSGC	1 cut(s)	911
TfiI	GAWTC	5 cut(s)	116, 727, 1239, 1325, 1873
Tru1I	TTAA	2 cut(s)	1395, 1718
Tru9I	TTAA	2 cut(s)	1395, 1718
TscAI	CASTG	5 cut(s)	149, 203, 603, 1195, 1666
TseFI	GTSAC	3 cut(s)	862, 1013, 1058
Tsp45I	GTSAC	3 cut(s)	862, 1013, 1058
TspDTI	ATGAA	9 cut(s)	43, 618, 942, 1317, 1367, 1396, 1514, 1566, 1911
TspRI	CASTG	5 cut(s)	149, 203, 603, 1195, 1666
Van91I	CCANNNNNTGG	1 cut(s)	1645
VpaK11BI	GGWCC	2 cut(s)	755, 1302
XapI	RAATTY	2 cut(s)	1556, 1615
XbaI	TCTAGA	1 cut(s)	760
XceI	RCATGY	1 cut(s)	1489
XcmI	CCANNNNNNNNNTGG	1 cut(s)	622
XmiI	GTMKAC	1 cut(s)	1173
XmnI	GAANNNNTTC	1 cut(s)	1632
XspI	CTAG	7 cut(s)	21, 153, 159, 449, 761, 801, 1728
ZrmI	AGTACT	2 cut(s)	151, 157
Zsp2I	ATGCAT	1 cut(s)	1781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.