Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004185

Physical Location & Seq

Genomic Coordinates Reverse (-)

3111089 .. 3116909

Gene Structure 5821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1047500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1929 bp

ATGACGGACGGCCACCTCTTCAACAATATCTCCCTCGGCGGCCGCGGCGGCACGAATCCGGGGCAGCTAAAAATATTTTCAGGAGGGATTTTATGGAAAAAACAGGGAGGGGGTAAAGCAGTCGAGGTTGATAAAGCTGACATTGTTGGGGTAACATGGATGAAGGTCCCAAAGACTAACCAACTTAGTGTTCAGATTAAGGACGGGTTATACTACAAGTTCATTGGATTTCGTGACCAGGATGTCACTAGTTTGACCAATTATTTTCAAAATACATGTGGGTTAACACCGGCAGAGAAGCAACTTTCTGTAAGCGGACGTAATTGGGGAGAAGTCGATTTAAGCGGGAATATGCTGACTTTCTTGGTTGACTCCAAGCAAGCATTTGAGGTATCTTTGGCTGATGTCTCACAAACACAACTTCAGGGGAAAAATGATGTCATCTTAGAGTTCCACGTGGATGATACGACAGGAGCTAATGAGAAAGATTCTTTGATGGAAATAAGCTTTCATATACCTAACTCCAACACTCAATTTGTTGGCGATGAGAGTCATCCTCCTGCTCAGGTTTTTCGTGACAAAATCATGTCAATGGCAGATGTTGGTGCTGGAGGTGAAGATGCTGTTACCACATTTGATAGCATTGCAATCCTCACACCAAGGGGTCGCTACAGCGTGGAACTTCATCTTTCATTCTTGCGGCTTCAAGGGGCTAATGATTTCAAAATTCAGTACAGCAGTGTTGTTCGTCTGTTTCTACTTCCTAGGTCTAACCAGCCTCATACCTTTGTTGTTGTCACTCTTGATCCTCCTATCCGTAAAGGCCAAACATTGTACCCGCATATTGTTTTGCAGTTTGAAACTGACCTTGTGTATCAAACCGAACTGACAATGAGTGAAGAACTTTTGAACACGAAATACAAGGACAAGTTAGAACTATCTTATAAGGGACTAATGCATGAAGTGTTCACCACAATATTGCGTGGCTTGTCTGGTGCCAAAGTTACGAAACCAGGAAAATTCCGCAGCTGTCAAGATGGTTATGCTGTCAAATCTTCACTGAAAGCTGAAGATGGAGTTCTATATCCTCTTGAGAAGAGCTTCTTTTTCCTACCAAAACCTCCCACCCTTATTCTTCACGATCAGATTGACTATGTGGAATTTGAGAGGCATGGTGCTGGAGGCTCAAATATGCACTATTTTGATCTTCTCATCAGACTCAAAAGTGAGCAAGAACACCTGTTCCGAAACATTCAGAGGAATGAATATCATAATCTTTTTGACTTCATCAGTTCAAAGGGTCTCAAAATCATGAACTTAGGAGAGGGCCAAGCAGCAAATGGTGGTGTGGCTCCTCTTCTTGATGACGCAGATGATGATGCTGTTGACCCACATCTTGTTCGTGTGAAGAATGAAGCTGGTGATGATGAGAGTGATGAAGAGGATGAAGATTTTGTTATTGACAAGGACGATGGAGGTTCTCCTACCGATGACTCTGGGGAGGATGATTCAGATGCTAGTGAAAGTGGAGGTGAAAAAGAGAAGCCTGCAAAAAAGGAGTCTAGAAAGGAACCTTCAACTTCCAAGGTATCATCTTCAAAGAAACAAAAAACCAAAGATGCAGGTGAAGATGGTTCAAAGAAGAAAAAACAGAAGAAGAAAAAGGATCCAAATGCGCCGAAAAGAGCAATGTCTGGTTTTATGTTCTTCTCAAACATGGAGAGAGATAATGTAAAGAGAGAGAACCCTGGAATTGCATTTACTGATGTGGGGAGAGTACTCGGAGAGAAGTGGAAAAAGATGTCAGCGGAGGAAAAGGAGCCATATGAAGCAAAGGCTCGTCAAGATAAAGAACGCTACAAGGATGAAATCAGTGGTTACAAGAACCCCCAACCCATGAACATAGATTCGGGGAATGAATCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000741 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005719 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008023 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009791 GO:0009889 GO:0009987 GO:0010197 GO:0010228 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0035101 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0048229 GO:0048284 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMG_box POB3_N Rtt106 SSrecog

Protein Analysis

643

Amino Acids

71.6

Weight (kDa)

5.41

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POB3_N	PF17292	7 - 96	3.9e-23	POB3-like N-terminal PH domain
SSrecog	PF03531	106 - 174	7.8e-26	Structure-specific recognition protein (SSRP1)
PH1_SSRP1-like	PF21103	207 - 335	9.6e-48	SSRP1 PH domain
Rttp106-like_middle	PF08512	348 - 439	1.7e-22	Histone chaperone Rttp106-like, middle domain
HMG_box_2	PF09011	557 - 625	3.9e-17	HMG-box domain
HMG_box	PF00505	560 - 628	1.8e-22	HMG (high mobility group) box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28730
fragaria_vesca	FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210
malus_domestica	MD09G1047500.v1.1 MD17G1047600.v1.1
prunus_persica	Prupe.3G271500_v2.0.a1 Prupe.3G271500_v2.0.a1
pyrus_communis	pycom111g03840 pycom17g04240
rosa_chinensis	RchiOBHm_Chr2g0169081
rosa_laevigata	RLG00000021832
rosa_multiflora	Rmu_sc0004901.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082480
rosa_rugosa	Rorug02G0536700
rosa_samantha	Rh2AG608600 Rh2BG621500 Rh2CG590200 Rh2DG632100
rosa_wichuraiana	Rw2G050460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	945
AarI	CACCTGC	1 cut(s)	1613
AasI	GACNNNNNNGTC	1 cut(s)	242
Acc36I	ACCTGC	1 cut(s)	1613
AccB1I	GGYRCC	1 cut(s)	995
AccII	CGCG	1 cut(s)	45
AclWI	GGATC	3 cut(s)	800, 1661, 1674
AcoI	YGGCCR	2 cut(s)	10, 40
AcsI	RAATTY	3 cut(s)	726, 1019, 1160
AcuI	CTGAAG	2 cut(s)	407, 1089
AcvI	CACGTG	1 cut(s)	457
AfaI	GTAC	3 cut(s)	734, 836, 1779
AflIII	ACRYGT	1 cut(s)	275
AhlI	ACTAGT	1 cut(s)	248
AjnI	CCWGG	3 cut(s)	237, 1012, 1747
AjuI	GAANNNNNNNTTGG	2 cut(s)	174, 206
AloI	GAACNNNNNNTCC	2 cut(s)	1227, 1259
AluBI	AGCT	8 cut(s)	67, 137, 476, 507, 1029, 1067, 1101, 1418
AluI	AGCT	8 cut(s)	67, 137, 476, 507, 1029, 1067, 1101, 1418
Alw26I	GTCTC	2 cut(s)	412, 1307
AlwI	GGATC	3 cut(s)	800, 1661, 1674
AoxI	GGCC	4 cut(s)	10, 40, 823, 1327
ApeKI	GCWGC	3 cut(s)	64, 1026, 1334
ApoI	RAATTY	3 cut(s)	726, 1019, 1160
ArsI	GACNNNNNNTTYG	2 cut(s)	1544, 1576
Asp700I	GAANNNNTTC	1 cut(s)	1100
AspA2I	CCTAGG	1 cut(s)	764
AspLEI	GCGC	1 cut(s)	1678
AspS9I	GGNCC	2 cut(s)	166, 1327
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	5 cut(s)	626, 961, 1433, 1544, 1637
AvaII	GGWCC	1 cut(s)	166
AvrII	CCTAGG	1 cut(s)	764
BamHI	GGATCC	1 cut(s)	1666
BanI	GGYRCC	1 cut(s)	995
BbrPI	CACGTG	1 cut(s)	457
BbvI	GCAGC	3 cut(s)	76, 1038, 1346
BccI	CCATC	5 cut(s)	490, 1031, 1067, 1466, 1625
BceAI	ACGGC	1 cut(s)	25
BciT130I	CCWGG	3 cut(s)	239, 1014, 1749
BcnI	CCSGG	1 cut(s)	60
BcoDI	GTCTC	2 cut(s)	412, 1307
BcuI	ACTAGT	1 cut(s)	248
BfaI	CTAG	4 cut(s)	249, 765, 1518, 1563
BfmI	CTRYAG	1 cut(s)	670
BfuAI	ACCTGC	1 cut(s)	1613
BglI	GCCNNNNNGGC	1 cut(s)	48
BisI	GCNGC	8 cut(s)	40, 43, 46, 49, 65, 701, 1027, 1335
BlnI	CCTAGG	1 cut(s)	764
BlsI	GCNGC	8 cut(s)	41, 44, 47, 50, 66, 702, 1028, 1336
BmcAI	AGTACT	1 cut(s)	1779
Bme1390I	CCNGG	4 cut(s)	60, 239, 1014, 1749
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	2 cut(s)	166, 1327
BmiI	GGNNCC	6 cut(s)	168, 997, 1353, 1572, 1668, 1821
BmrFI	CCNGG	4 cut(s)	60, 239, 1014, 1749
BmsI	GCATC	4 cut(s)	610, 1369, 1504, 1609
BplI	GAGNNNNNCTC	2 cut(s)	541, 573
BpmI	CTGGAG	2 cut(s)	630, 1200
Bpu10I	CCTNAGC	1 cut(s)	564
BpuEI	CTTGAG	1 cut(s)	1112
BpuMI	CCSGG	1 cut(s)	60
BsaAI	YACGTR	1 cut(s)	457
BsaI	GGTCTC	1 cut(s)	1307
BsaJI	CCNNGG	7 cut(s)	34, 43, 59, 659, 764, 1584, 1747
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bse118I	RCCGGY	1 cut(s)	289
Bse3DI	GCAATG	2 cut(s)	642, 1695
BseBI	CCWGG	3 cut(s)	239, 1014, 1749
BseDI	CCNNGG	7 cut(s)	34, 43, 59, 659, 764, 1584, 1747
BseGI	GGATG	7 cut(s)	165, 247, 466, 553, 1450, 1510, 1870
BseMI	GCAATG	2 cut(s)	642, 1695
BseMII	CTCAG	1 cut(s)	578
BseRI	GAGGAG	1 cut(s)	1344
BseX3I	CGGCCG	1 cut(s)	40
BseXI	GCAGC	3 cut(s)	76, 1038, 1346
Bsh1236I	CGCG	1 cut(s)	45
Bsh1285I	CGRYCG	1 cut(s)	43
BshFI	GGCC	4 cut(s)	12, 42, 825, 1329
BshNI	GGYRCC	1 cut(s)	995
BsiEI	CGRYCG	1 cut(s)	43
BsiSI	CCGG	2 cut(s)	59, 290
BslFI	GGGAC	2 cut(s)	152, 963
BsmAI	GTCTC	2 cut(s)	412, 1307
BsmFI	GGGAC	2 cut(s)	152, 963
BsnI	GGCC	4 cut(s)	12, 42, 825, 1329
Bso31I	GGTCTC	1 cut(s)	1307
Bsp143I	GATC	4 cut(s)	805, 1141, 1204, 1666
BspANI	GGCC	4 cut(s)	12, 42, 825, 1329
BspCNI	CTCAG	1 cut(s)	577
BspFNI	CGCG	1 cut(s)	45
BspHI	TCATGA	1 cut(s)	1311
BspLI	GGNNCC	6 cut(s)	168, 997, 1353, 1572, 1668, 1821
BspMI	ACCTGC	1 cut(s)	1613
BspPI	GGATC	3 cut(s)	800, 1661, 1674
BspQI	GCTCTTC	1 cut(s)	1091
BspT107I	GGYRCC	1 cut(s)	995
BspTNI	GGTCTC	1 cut(s)	1307
BsrDI	GCAATG	2 cut(s)	642, 1695
BsrFI	RCCGGY	1 cut(s)	289
BssAI	RCCGGY	1 cut(s)	289
BssECI	CCNNGG	7 cut(s)	34, 43, 59, 659, 764, 1584, 1747
BssMI	GATC	4 cut(s)	805, 1141, 1204, 1666
BssT1I	CCWWGG	3 cut(s)	659, 764, 1584
Bst2UI	CCWGG	3 cut(s)	239, 1014, 1749
Bst6I	CTCTTC	4 cut(s)	23, 1091, 1362, 1434
BstBAI	YACGTR	1 cut(s)	457
BstC8I	GCNNGC	2 cut(s)	381, 1548
BstDEI	CTNAG	4 cut(s)	185, 445, 564, 1318
BstDSI	CCRYGG	1 cut(s)	43
BstF5I	GGATG	7 cut(s)	165, 247, 466, 553, 1450, 1510, 1870
BstFNI	CGCG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	1678
BstKTI	GATC	4 cut(s)	808, 1144, 1207, 1669
BstMAI	GTCTC	2 cut(s)	412, 1307
BstMBI	GATC	4 cut(s)	805, 1141, 1204, 1666
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 48
BstNI	CCWGG	3 cut(s)	239, 1014, 1749
BstNSI	RCATGY	1 cut(s)	279
BstSCI	CCNGG	4 cut(s)	58, 237, 1012, 1747
BstSFI	CTRYAG	1 cut(s)	670
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	3 cut(s)	76, 1038, 1346
BstX2I	RGATCY	1 cut(s)	1666
BstYI	RGATCY	1 cut(s)	1666
BstZI	CGGCCG	1 cut(s)	40
BsuRI	GGCC	4 cut(s)	12, 42, 825, 1329
BtgI	CCRYGG	1 cut(s)	43
BtgZI	GCGATG	1 cut(s)	558
BtsCI	GGATG	7 cut(s)	165, 247, 466, 553, 1450, 1510, 1870
BtsI	GCAGTG	1 cut(s)	745
BtsIMutI	CAGTG	3 cut(s)	745, 1058, 1879
BveI	ACCTGC	1 cut(s)	1613
Cac8I	GCNNGC	2 cut(s)	381, 1548
CciI	TCATGA	1 cut(s)	1311
CciNI	GCGGCCGC	1 cut(s)	40
CfoI	GCGC	1 cut(s)	1678
Cfr10I	RCCGGY	1 cut(s)	289
Cfr13I	GGNCC	2 cut(s)	166, 1327
Cfr42I	CCGCGG	1 cut(s)	46
CseI	GACGC	1 cut(s)	1376
Csp6I	GTAC	3 cut(s)	733, 835, 1778
CviAII	CATG	8 cut(s)	156, 276, 586, 959, 1172, 1312, 1717, 1897
CviQI	GTAC	3 cut(s)	733, 835, 1778
DdeI	CTNAG	4 cut(s)	185, 445, 564, 1318
DpnI	GATC	4 cut(s)	807, 1143, 1206, 1668
DpnII	GATC	4 cut(s)	805, 1141, 1204, 1666
DrdI	GACNNNNNNGTC	1 cut(s)	242
DseDI	GACNNNNNNGTC	1 cut(s)	242
EaeI	YGGCCR	2 cut(s)	10, 40
EagI	CGGCCG	1 cut(s)	40
Eam1104I	CTCTTC	4 cut(s)	23, 1091, 1362, 1434
EarI	CTCTTC	4 cut(s)	23, 1091, 1362, 1434
EclXI	CGGCCG	1 cut(s)	40
Eco130I	CCWWGG	3 cut(s)	659, 764, 1584
Eco31I	GGTCTC	1 cut(s)	1307
Eco47I	GGWCC	1 cut(s)	166
Eco52I	CGGCCG	1 cut(s)	40
Eco57I	CTGAAG	2 cut(s)	407, 1089
Eco72I	CACGTG	1 cut(s)	457
EcoO109I	RGGNCCY	1 cut(s)	166
EcoRII	CCWGG	3 cut(s)	237, 1012, 1747
EcoT14I	CCWWGG	3 cut(s)	659, 764, 1584
EcoT22I	ATGCAT	1 cut(s)	960
ErhI	CCWWGG	3 cut(s)	659, 764, 1584
FaeI	CATG	8 cut(s)	159, 279, 589, 962, 1175, 1315, 1720, 1900
FalI	AAGNNNNNCTT	2 cut(s)	1088, 1120
FaqI	GGGAC	2 cut(s)	152, 963
FatI	CATG	8 cut(s)	155, 275, 585, 958, 1171, 1311, 1716, 1896
FauI	CCCGC	2 cut(s)	338, 846
FauNDI	CATATG	1 cut(s)	1825
Fnu4HI	GCNGC	8 cut(s)	40, 43, 46, 49, 65, 701, 1027, 1335
FokI	GGATG	7 cut(s)	172, 254, 473, 540, 1457, 1517, 1877
Fsp4HI	GCNGC	8 cut(s)	40, 43, 46, 49, 65, 701, 1027, 1335
FspBI	CTAG	4 cut(s)	249, 765, 1518, 1563
GlaI	GCGC	1 cut(s)	1677
GluI	GCNGC	8 cut(s)	40, 43, 46, 49, 65, 701, 1027, 1335
GsuI	CTGGAG	2 cut(s)	630, 1200
HaeIII	GGCC	4 cut(s)	12, 42, 825, 1329
HapII	CCGG	2 cut(s)	59, 290
HgaI	GACGC	1 cut(s)	1376
HhaI	GCGC	1 cut(s)	1678
Hin1II	CATG	8 cut(s)	159, 279, 589, 962, 1175, 1315, 1720, 1900
Hin6I	GCGC	1 cut(s)	1676
HinP1I	GCGC	1 cut(s)	1676
HincII	GTYRAC	3 cut(s)	285, 370, 1387
HindII	GTYRAC	3 cut(s)	285, 370, 1387
HindIII	AAGCTT	1 cut(s)	505
HpaI	GTTAAC	1 cut(s)	285
HpaII	CCGG	2 cut(s)	59, 290
HphI	GGTGA	5 cut(s)	626, 961, 1433, 1544, 1637
Hpy166II	GTNNAC	4 cut(s)	285, 370, 969, 1387
Hpy188I	TCNGA	8 cut(s)	195, 1146, 1217, 1247, 1257, 1513, 1784, 1924
Hpy8I	GTNNAC	4 cut(s)	285, 370, 969, 1387
HpyAV	CCTTC	2 cut(s)	157, 1584
HpyCH4IV	ACGT	2 cut(s)	319, 456
HpyCH4V	TGCA	7 cut(s)	647, 853, 958, 1195, 1550, 1622, 1757
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 48
HpyF3I	CTNAG	4 cut(s)	185, 445, 564, 1318
HpySE526I	ACGT	2 cut(s)	319, 456
Hsp92II	CATG	8 cut(s)	159, 279, 589, 962, 1175, 1315, 1720, 1900
HspAI	GCGC	1 cut(s)	1676
KspAI	GTTAAC	1 cut(s)	285
KspI	CCGCGG	1 cut(s)	46
Kzo9I	GATC	4 cut(s)	805, 1141, 1204, 1666
LguI	GCTCTTC	1 cut(s)	1091
LmnI	GCTCC	3 cut(s)	473, 1357, 1819
Lsp1109I	GCAGC	3 cut(s)	76, 1038, 1346
LweI	GCATC	4 cut(s)	610, 1369, 1504, 1609
MaeI	CTAG	4 cut(s)	249, 765, 1518, 1563
MaeII	ACGT	2 cut(s)	319, 456
MaeIII	GTNAC	8 cut(s)	151, 233, 244, 575, 625, 796, 1003, 1877
MalI	GATC	4 cut(s)	807, 1143, 1206, 1668
MboI	GATC	4 cut(s)	805, 1141, 1204, 1666
MflI	RGATCY	1 cut(s)	1666
MluCI	AATT	7 cut(s)	259, 322, 533, 726, 1019, 1160, 1752
MlyI	GAGTC	5 cut(s)	365, 559, 1212, 1487, 1568
MmeI	TCCRAC	1 cut(s)	549
Mph1103I	ATGCAT	1 cut(s)	960
MroXI	GAANNNNTTC	1 cut(s)	1100
MseI	TTAA	3 cut(s)	198, 284, 341
MslI	CAYNNNNRTG	2 cut(s)	459, 590
MspA1I	CMGCKG	3 cut(s)	45, 1029, 1808
MspI	CCGG	2 cut(s)	59, 290
MspR9I	CCNGG	4 cut(s)	60, 239, 1014, 1749
MvaI	CCWGG	3 cut(s)	239, 1014, 1749
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	45, 48
NciI	CCSGG	1 cut(s)	60
NdeI	CATATG	1 cut(s)	1825
NdeII	GATC	4 cut(s)	805, 1141, 1204, 1666
NlaIII	CATG	8 cut(s)	159, 279, 589, 962, 1175, 1315, 1720, 1900
NlaIV	GGNNCC	6 cut(s)	168, 997, 1353, 1572, 1668, 1821
NmeAIII	GCCGAG	1 cut(s)	15
NmuCI	GTSAC	4 cut(s)	233, 244, 575, 796
NotI	GCGGCCGC	1 cut(s)	40
NsiI	ATGCAT	1 cut(s)	960
NspI	RCATGY	1 cut(s)	279
PagI	TCATGA	1 cut(s)	1311
PaqCI	CACCTGC	1 cut(s)	1613
PciI	ACATGT	1 cut(s)	275
PciSI	GCTCTTC	1 cut(s)	1091
PdmI	GAANNNNTTC	1 cut(s)	1100
PfeI	GAWTC	5 cut(s)	55, 488, 1508, 1907, 1919
PkrI	GCNGC	8 cut(s)	41, 44, 47, 50, 66, 702, 1028, 1336
PleI	GAGTC	5 cut(s)	365, 558, 1212, 1487, 1567
PmaCI	CACGTG	1 cut(s)	457
PmlI	CACGTG	1 cut(s)	457
PpsI	GAGTC	5 cut(s)	365, 558, 1212, 1487, 1567
Ppu21I	YACGTR	1 cut(s)	457
PpuMI	RGGWCCY	1 cut(s)	166
PscI	ACATGT	1 cut(s)	275
PsiI	TTATAA	1 cut(s)	945
Psp5II	RGGWCCY	1 cut(s)	166
Psp6I	CCWGG	3 cut(s)	237, 1012, 1747
PspCI	CACGTG	1 cut(s)	457
PspGI	CCWGG	3 cut(s)	237, 1012, 1747
PspN4I	GGNNCC	6 cut(s)	168, 997, 1353, 1572, 1668, 1821
PspPI	GGNCC	2 cut(s)	166, 1327
PspPPI	RGGWCCY	1 cut(s)	166
PsrI	GAACNNNNNNTAC	2 cut(s)	902, 934
PsuI	RGATCY	1 cut(s)	1666
PvuII	CAGCTG	1 cut(s)	1029
RsaI	GTAC	3 cut(s)	734, 836, 1779
RsaNI	GTAC	3 cut(s)	733, 835, 1778
RseI	CAYNNNNRTG	2 cut(s)	459, 590
SacII	CCGCGG	1 cut(s)	46
SapI	GCTCTTC	1 cut(s)	1091
SaqAI	TTAA	3 cut(s)	198, 284, 341
SatI	GCNGC	8 cut(s)	40, 43, 46, 49, 65, 701, 1027, 1335
Sau3AI	GATC	4 cut(s)	805, 1141, 1204, 1666
Sau96I	GGNCC	2 cut(s)	166, 1327
ScaI	AGTACT	1 cut(s)	1779
SchI	GAGTC	5 cut(s)	365, 559, 1212, 1487, 1568
ScrFI	CCNGG	4 cut(s)	60, 239, 1014, 1749
SfaNI	GCATC	4 cut(s)	610, 1369, 1504, 1609
SfcI	CTRYAG	1 cut(s)	670
Sfr303I	CCGCGG	1 cut(s)	46
SgrBI	CCGCGG	1 cut(s)	46
SinI	GGWCC	1 cut(s)	166
SmiMI	CAYNNNNRTG	2 cut(s)	459, 590
SmlI	CTYRAG	1 cut(s)	1091
SmoI	CTYRAG	1 cut(s)	1091
SpeI	ACTAGT	1 cut(s)	248
Sse9I	AATT	7 cut(s)	259, 322, 533, 726, 1019, 1160, 1752
SspI	AATATT	2 cut(s)	75, 978
SspMI	CTAG	4 cut(s)	249, 765, 1518, 1563
StyD4I	CCNGG	4 cut(s)	58, 237, 1012, 1747
StyI	CCWWGG	3 cut(s)	659, 764, 1584
TaiI	ACGT	2 cut(s)	322, 459
TaqI	TCGA	2 cut(s)	123, 336
TasI	AATT	7 cut(s)	259, 322, 533, 726, 1019, 1160, 1752
TatI	WGTACW	2 cut(s)	732, 1777
TauI	GCSGC	5 cut(s)	42, 45, 48, 51, 703
TfiI	GAWTC	5 cut(s)	55, 488, 1508, 1907, 1919
Tru1I	TTAA	3 cut(s)	198, 284, 341
Tru9I	TTAA	3 cut(s)	198, 284, 341
TscAI	CASTG	3 cut(s)	745, 1065, 1879
TseFI	GTSAC	4 cut(s)	233, 244, 575, 796
TseI	GCWGC	3 cut(s)	64, 1026, 1334
Tsp45I	GTSAC	4 cut(s)	233, 244, 575, 796
TspGWI	ACGGA	2 cut(s)	20, 806
TspRI	CASTG	3 cut(s)	745, 1065, 1879
VpaK11BI	GGWCC	1 cut(s)	166
XapI	RAATTY	3 cut(s)	726, 1019, 1160
XbaI	TCTAGA	1 cut(s)	1562
XceI	RCATGY	1 cut(s)	279
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1337
XmaJI	CCTAGG	1 cut(s)	764
XmnI	GAANNNNTTC	1 cut(s)	1100
XspI	CTAG	4 cut(s)	249, 765, 1518, 1563
ZrmI	AGTACT	1 cut(s)	1779
Zsp2I	ATGCAT	1 cut(s)	960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.